Electrical Engineering And Systems Science

The energy available in Micro Grid (MG) that is powered by solar energy is tightly related to the weather conditions in the moment of generation. Very short-term forecast of solar irradiance provides the MG with the capability of automatically controlling the dispatch of energy. We propose to achieve this using a data acquisition systems (DAQ) that simultaneously records sky imaging and Global Solar Irradiance (GSI) measurements, with the objective of extracting features from clouds and use them to forecast the power produced by a Photovoltaic (PV) system. The DAQ system is nicknamed as the \emph{Girasol Machine} (Girasol means Sunflower in Spanish). The sky imaging system consists of a longwave infrared (IR) camera and a visible (VI) light camera with a fisheye lens attached to it. The cameras are installed inside a weatherproof enclosure that it is mounted on an outdoor tracker. The tracker updates its pan an tilt every second using a solar position algorithm to maintain the Sun in the center of the IR and VI images. A pyranometer is situated on a horizontal support next to the DAQ system to measure GSI. The dataset, composed of IR images, VI images, GSI measurements, and the Sun's positions, has been tagged with timestamps.

Glioblastoma Multiforme is a very aggressive type of brain tumor. Due to spatial and temporal intra-tissue inhomogeneity, location and the extent of the cancer tissue, it is difficult to detect and dissect the tumor regions. In this paper, we propose survival prognosis models using four regressors operating on handcrafted image-based and radiomics features. We hypothesize that the radiomics shape features have the highest correlation with survival prediction. The proposed approaches were assessed on the Brain Tumor Segmentation (BraTS-2020) challenge dataset. The highest accuracy of image features with random forest regressor approach was 51.5\% for the training and 51.7\% for the validation dataset. The gradient boosting regressor with shape features gave an accuracy of 91.5\% and 62.1\% on training and validation datasets respectively. It is better than the BraTS 2020 survival prediction challenge winners on the training and validation datasets. Our work shows that handcrafted features exhibit a strong correlation with survival prediction. The consensus based regressor with gradient boosting and radiomics shape features is the best combination for survival prediction.

Interpretability is a critical factor in applying complex deep learning models to advance the understanding of brain disorders in neuroimaging studies. To interpret the decision process of a trained classifier, existing techniques typically rely on saliency maps to quantify the voxel-wise or feature-level importance for classification through partial derivatives. Despite providing some level of localization, these maps are not human-understandable from the neuroscience perspective as they do not inform the specific meaning of the alteration linked to the brain disorder. Inspired by the image-to-image translation scheme, we propose to train simulator networks that can warp a given image to inject or remove patterns of the disease. These networks are trained such that the classifier produces consistently increased or decreased prediction logits for the simulated images. Moreover, we propose to couple all the simulators into a unified model based on conditional convolution. We applied our approach to interpreting classifiers trained on a synthetic dataset and two neuroimaging datasets to visualize the effect of the Alzheimer's disease and alcohol use disorder. Compared to the saliency maps generated by baseline approaches, our simulations and visualizations based on the Jacobian determinants of the warping field reveal meaningful and understandable patterns related to the diseases.

Integrating mathematical morphology operations within deep neural networks has been subject to increasing attention lately. However, replacing standard convolution layers with erosions or dilations is particularly challenging because the min and max operations are not differentiable. Relying on the asymptotic behavior of the counter-harmonic mean, p-convolutional layers were proposed as a possible workaround to this issue since they can perform pseudo-dilation or pseudo-erosion operations (depending on the value of their inner parameter p), and very promising results were reported. In this work, we present two new morphological layers based on the same principle as the p-convolutional layer while circumventing its principal drawbacks, and demonstrate their potential interest in further implementations within deep convolutional neural network architectures.

Brain morphometry from magnetic resonance imaging (MRI) is a consolidated biomarker for many neurodegenerative diseases. Recent advances in this domain indicate that deep convolutional neural networks can infer morphometric measurements within a few seconds. Nevertheless, the accuracy of the devised model for insightful bio-markers (mean curvature and thickness) remains unsatisfactory. In this paper, we propose a more accurate and efficient neural network model for brain morphometry named HerstonNet. More specifically, we develop a 3D ResNet-based neural network to learn rich features directly from MRI, design a multi-scale regression scheme by predicting morphometric measures at feature maps of different resolutions, and leverage a robust optimization method to avoid poor quality minima and reduce the prediction variance. As a result, HerstonNet improves the existing approach by 24.30% in terms of intraclass correlation coefficient (agreement measure) to FreeSurfer silver-standards while maintaining a competitive run-time.

Accurate deformable 4-dimensional (4D) (3-dimensional in space and time) medical images registration is essential in a variety of medical applications. Deep learning-based methods have recently gained popularity in this area for the significant lower inference time. However, they suffer from drawbacks of non-optimal accuracy and the requirement of a large amount of training data. A new method named GroupRegNet is proposed to address both limitations. The deformation fields to warp all images in the group into a common template is obtained through one-shot learning. The use of the implicit template reduces bias and accumulated error associated with the specified reference image. The one-shot learning strategy is similar to the conventional iterative optimization method but the motion model and parameters are replaced with a convolutional neural network (CNN) and the weights of the network. GroupRegNet also features a simpler network design and a more straightforward registration process, which eliminates the need to break up the input image into patches. The proposed method was quantitatively evaluated on two public respiratory-binned 4D-CT datasets. The results suggest that GroupRegNet outperforms the latest published deep learning-based methods and is comparable to the top conventional method pTVreg. To facilitate future research, the source code is available at this https URL.

For screening, 3D shape of the eye retina often provides structural information and can assist ophthalmologists to diagnose diseases. However, fundus images which are one the most common screening modalities for retina diagnosis lack this information due to their 2D nature. Hence, in this work, we try to infer about this 3D information or more specifically its heights. Recent approaches have used shading information for reconstructing the heights but their output is not accurate since the utilized information is not sufficient. Additionally, other methods were dependent on the availability of more than one image of the eye which is not available in practice. In this paper, motivated by the success of Conditional Generative Adversarial Networks(cGANs) and deeply supervised networks, we propose a novel architecture for the generator which enhances the details in a sequence of steps. Comparisons on our dataset illustrate that the proposed method outperforms all of the state-of-the-art methods in image translation and medical image translation on this particular task. Additionally, clinical studies also indicate that the proposed method can provide additional information for ophthalmologists for diagnosis.

High Definition (HD) digital photos taken with drones are widely used in the study of Geoscience. However, blurry images are often taken in collected data, and it takes a lot of time and effort to distinguish clear images from blurry ones. In this work, we apply Machine learning techniques, such as Support Vector Machine (SVM) and Neural Network (NN) to classify HD images in Geoscience as clear and blurry, and therefore automate data cleaning in Geoscience. We compare the results of classification based on features abstracted from several mathematical models. Some of the implementation of our machine learning tool is freely available at: this https URL.

Light scattering by tissue severely limits how deep beneath the surface one can image, and the spatial resolution one can obtain from these images. Diffuse optical tomography (DOT) is one of the most powerful techniques for imaging deep within tissue -- well beyond the conventional ??10-15 mean scattering lengths tolerated by ballistic imaging techniques such as confocal and two-photon microscopy. Unfortunately, existing DOT systems are limited, achieving only centimeter-scale resolution. Furthermore, they suffer from slow acquisition times and slow reconstruction speeds making real-time imaging infeasible. We show that time-of-flight diffuse optical tomography (ToF-DOT) and its confocal variant (CToF-DOT), by exploiting the photon travel time information, allow us to achieve millimeter spatial resolution in the highly scattered diffusion regime ( >50 mean free paths). In addition, we demonstrate two additional innovations: focusing on confocal measurements, and multiplexing the illumination sources allow us to significantly reduce the measurement acquisition time. Finally, we rely on a novel convolutional approximation that allows us to develop a fast reconstruction algorithm, achieving a 100 ? speedup in reconstruction time compared to traditional DOT reconstruction techniques. Together, we believe that these technical advances serve as the first step towards real-time, millimeter resolution, deep tissue imaging using DOT.

Full-color imaging is significant in digital pathology. Compared with a grayscale image or a pseudo-color image that only contains the contrast information, it can identify and detect the target object better with color texture information. Fourier ptychographic microscopy (FPM) is a high-throughput computational imaging technique that breaks the tradeoff between high resolution (HR) and large field-of-view (FOV), which eliminates the artifacts of scanning and stitching in digital pathology and improves its imaging efficiency. However, the conventional full-color digital pathology based on FPM is still time-consuming due to the repeated experiments with tri-wavelengths. A color transfer FPM approach, termed CFPM was reported. The color texture information of a low resolution (LR) full-color pathologic image is directly transferred to the HR grayscale FPM image captured by only a single wavelength. The color space of FPM based on the standard CIE-XYZ color model and display based on the standard RGB (sRGB) color space were established. Different FPM colorization schemes were analyzed and compared with thirty different biological samples. The average root-mean-square error (RMSE) of the conventional method and CFPM compared with the ground truth is 5.3% and 5.7%, respectively. Therefore, the acquisition time is significantly reduced by 2/3 with the sacrifice of precision of only 0.4%. And CFPM method is also compatible with advanced fast FPM approaches to reduce computation time further.