Computer Science

In recent years, the modeling interest has increased significantly from the molecular level to the atomic and quantum scale. The field of computational chemistry plays a significant role in designing computational models for the operation and simulation of systems ranging from atoms and molecules to industrial-scale processes. It is influenced by a tremendous increase in computing power and the efficiency of algorithms. The representation of chemical reactions using classical automata theory in thermodynamic terms had a great influence on computer science. The study of chemical information processing with quantum computational models is a natural goal. In this paper, we have modeled chemical reactions using two-way quantum finite automata, which are halted in linear time. Additionally, classical pushdown automata can be designed for such chemical reactions with multiple stacks. It has been proven that computational versatility can be increased by combining chemical accept/reject signatures and quantum automata models.

In this work, we define a framework of automata constructions based on quasiorders over words to provide new insights on the class of residual automata. We present a new residualization operation and a generalized double-reversal method for building the canonical residual automaton for a given language. Finally, we use our framework to offer a quasiorder-based perspective on NL*, an online learning algorithm for residual automata. We conclude that quasiorders are fundamental to residual automata as congruences are to deterministic automata.

Repeated idempotent elements are commonly used to characterise iterable behaviours in abstract models of computation. Therefore, given a monoid M , it is natural to ask how long a sequence of elements of M needs to be to ensure the presence of consecutive idempotent factors. This question is formalised through the notion of the Ramsey function R M associated to M, obtained by mapping every positive integer k to the minimal integer R M (k) such that every word u in M ??of length R M (k) contains k consecutive non-empty factors that correspond to the same idempotent element of M . In this work, we study the behaviour of the Ramsey function R M by investigating the regular D -length of M , defined as the largest size L(M) of a submonoid of M isomorphic to the set of natural numbers {1,2,...,L(M)} equipped with the Max operation. We show that the regular D -length of M determines the degree of R M , by proving that k L(M) ??R M (k)??k|M | 4 ) L(M) . To allow applications of this result, we provide the value of the regular D -length of diverse monoids. In particular, we prove that the full monoid of n?n Boolean matrices, which is used to express transition monoids of non-deterministic automata, has a regular D -length of n 2 +n+2 2 .

We introduce a subclass of linear recurrence sequences which we call poly-rational sequences because they are denoted by rational expressions closed under sum and product. We show that this class is robust by giving several characterisations: polynomially ambiguous weighted automata, copyless cost-register automata, rational formal series, and linear recurrence sequences whose eigenvalues are roots of rational numbers.

Parsing Expression Grammars (PEGs) are a recognition-based formalism which allows to describe the syntactical and the lexical elements of a language. The main difference between Context-Free Grammars (CFGs) and PEGs relies on the interpretation of the choice operator: while the CFGs' unordered choice e | e' is interpreted as the union of the languages recognized by e and e, the PEGs' prioritized choice e/e' discards e' if e succeeds. Such subtle, but important difference, changes the language recognized and yields more efficient parsing algorithms. This paper proposes a rewriting logic semantics for PEGs. We start with a rewrite theory giving meaning to the usual constructs in PEGs. Later, we show that cuts, a mechanism for controlling backtracks in PEGs, finds also a natural representation in our framework. We generalize such mechanism, allowing for both local and global cuts with a precise, unified and formal semantics. Hence, our work strives at better understanding and controlling backtracks in parsers for PEGs. The semantics we propose is executable and, besides being a parser with modest efficiency, it can be used as a playground to test different optimization ideas. More importantly, it is a mathematical tool that can be used for different analyses.

We develop a fully diagrammatic approach to the theory of finite-state automata, based on reinterpreting their usual state-transition graphical representation as a two-dimensional syntax of string diagrams. Moreover, we provide an equational theory that completely axiomatises language equivalence in this new setting. This theory has two notable features. First, the Kleene star is a derived concept, as it can be decomposed into more primitive algebraic blocks. Second, the proposed axiomatisation is finitary -- a result which is provably impossible to obtain for the one-dimensional syntax of regular expressions.

Regular path queries (RPQs) are an essential component of graph query languages. Such queries consider a regular expression r and a directed edge-labeled graph G and search for paths in G for which the sequence of labels is in the language of r. In order to avoid having to consider infinitely many paths, some database engines restrict such paths to be trails, that is, they only consider paths without repeated edges. In this paper we consider the evaluation problem for RPQs under trail semantics, in the case where the expression is fixed. We show that, in this setting, there exists a trichotomy. More precisely, the complexity of RPQ evaluation divides the regular languages into the finite languages, the class Ttract (for which the problem is tractable), and the rest. Interestingly, the tractable class in the trichotomy is larger than for the trichotomy for simple paths, discovered by Bagan, Bonifati, and Groz [PODS 2013]. In addition to this trichotomy result, we also study characterizations of the tractable class, its expressivity, the recognition problem, closure properties, and show how the decision problem can be extended to the enumeration problem, which is relevant to practice.

We investigate the state complexity of the shuffle operation on regular languages initiated by Campeanu et al. and studied subsequently by Brzozowski et al. We shift the problem into the combinatorics domain by turning the problem of state accessibility into a problem of intersection of partitions. This allows us to develop new tools and to reformulate the conjecture of Brzozowski et al. about the above-mentionned state complexity.

Fault Tree Analysis (FTA) is a prominent technique in industrial and scientific risk assessment. Repairable Fault Trees (RFT) enhance the classical Fault Tree (FT) model by introducing the possibility to describe complex dependent repairs of system components. Usual frameworks for analyzing FTs such as BDD, SBDD, and Markov chains fail to assess the desired properties over RFT complex models, either because these become too large, or due to cyclic behaviour introduced by dependent repairs. Simulation is another way to carry out this kind of analysis. In this paper we review the RFT model with Repair Boxes as introduced by Daniele Codetta-Raiteri. We present compositional semantics for this model in terms of Input/Output Stochastic Automata, which allows for the modelling of events occurring according to general continuous distribution. Moreover, we prove that the semantics generates (weakly) deterministic models, hence suitable for discrete event simulation, and prominently for Rare Event Simulation using the FIG tool.

We provide a direct proof of Agafonov's theorem which states that finite state selection preserves normality. We also extends this result to the more general setting of shifts of finite type by defining selections which are compatible the shift. A slightly more general statement is obtained as we show that any Markov measure is preserved by finite state compatible selection.