Featured Researches

Computational Physics

Achieving thermodynamic consistency in a class of free-energy multiphase lattice Boltzmann models

The free-energy lattice Boltzmann (LB) model is one of the major multiphase models in the LB community. The present study is focused on a class of free-energy LB models in which the divergence of thermodynamic pressure tensor or its equivalent form expressed by the chemical potential is incorporated into the LB equation via a forcing term. Although this class of free-energy LB models may be thermodynamically consistent at the continuum level, it suffers from thermodynamic inconsistency at the discrete lattice level owing to numerical errors [Guo et al., Physical Review E 83, 036707 (2011)]. The numerical error term mainly includes two parts, one comes from the discrete gradient operator and the other can be identified in a high-order Chapman-Enskog analysis. In this paper, we propose an improved scheme to eliminate the thermodynamic inconsistency of the aforementioned class of free-energy LB models. The improved scheme is constructed by modifying the equation of state of the standard LB equation, through which the discretization of ∇(ρ c 2 s ) is no longer involved in the force calculation and then the numerical errors can be significantly reduced. Numerical simulations are subsequently performed to validate the proposed scheme. The numerical results show that the improved scheme is capable of eliminating the thermodynamic inconsistency and can significantly reduce the spurious currents in comparison with the standard forcing-based free-energy LB model.

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Computational Physics

Acoustic prediction of flowrate: varying liquid jet stream onto a free surface

Information on liquid jet stream flow is crucial in many real world applications. In a large number of cases, these flows fall directly onto free surfaces (e.g. pools), creating a splash with accompanying splashing sounds. The sound produced is supplied by energy interactions between the liquid jet stream and the passive free surface. In this investigation, we collect the sound of a water jet of varying flowrate falling into a pool of water, and use this sound to predict the flowrate and flowrate trajectory involved. Two approaches are employed: one uses machine-learning models trained using audio features extracted from the collected sound to predict the flowrate (and subsequently the flowrate trajectory). In contrast, the second method directly uses acoustic parameters related to the spectral energy of the liquid-liquid interaction to estimate the flowrate trajectory. The actual flowrate, however, is determined directly using a gravimetric method: tracking the change in mass of the pooling liquid over time. We show here that the two methods agree well with the actual flowrate and offer comparable performance in accurately predicting the flowrate trajectory, and accordingly offer insights for potential real-life applications using sound.

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Computational Physics

Active Learning A Neural Network Model For Gold Clusters \& Bulk From Sparse First Principles Training Data

Small metal clusters are of fundamental scientific interest and of tremendous significance in catalysis. These nanoscale clusters display diverse geometries and structural motifs depending on the cluster size; a knowledge of this size-dependent structural motifs and their dynamical evolution has been of longstanding interest. Classical MD typically employ predefined functional forms which limits their ability to capture such complex size-dependent structural and dynamical transformation. Neural Network (NN) based potentials represent flexible alternatives and in principle, well-trained NN potentials can provide high level of flexibility, transferability and accuracy on-par with the reference model used for training. A major challenge, however, is that NN models are interpolative and requires large quantities of training data to ensure that the model adequately samples the energy landscape both near and far-from-equilibrium. Here, we introduce an active learning (AL) scheme that trains a NN model on-the-fly with minimal amount of first-principles based training data. Our AL workflow is initiated with a sparse training dataset (1 to 5 data points) and is updated on-the-fly via a Nested Ensemble Monte Carlo scheme that iteratively queries the energy landscape in regions of failure and updates the training pool to improve the network performance. Using a representative system of gold clusters, we demonstrate that our AL workflow can train a NN with ~500 total reference calculations. Our NN predictions are within 30 meV/atom and 40 meV/Åof the reference DFT calculations. Moreover, our AL-NN model also adequately captures the various size-dependent structural and dynamical properties of gold clusters in excellent agreement with DFT calculations and available experiments.

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Computational Physics

Adaptive 3D convolutional neural network-based reconstruction method for 3D coherent diffraction imaging

We present a novel adaptive machine-learning based approach for reconstructing three-dimensional (3D) crystals from coherent diffraction imaging (CDI). We represent the crystals using spherical harmonics (SH) and generate corresponding synthetic diffraction patterns. We utilize 3D convolutional neural networks (CNN) to learn a mapping between 3D diffraction volumes and the SH which describe the boundary of the physical volumes from which they were generated. We use the 3D CNN-predicted SH coefficients as the initial guesses which are then fine tuned using adaptive model independent feedback for improved accuracy.

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Computational Physics

Adaptive Multidimensional Integration: VEGAS Enhanced

We describe a new algorithm, VEGAS+, for adaptive multidimensional Monte Carlo integration. The new algorithm adds a second adaptive strategy, adaptive stratified sampling, to the adaptive importance sampling that is the basis for its widely used predecessor VEGAS. Both VEGAS and VEGAS+ are effective for integrands with large peaks, but VEGAS+ can be much more effective for integrands with multiple peaks or other significant structures aligned with diagonals of the integration volume. We give examples where VEGAS+ is 2-19 times more accurate than VEGAS. We also show how to combine VEGAS+ with other integrators, such as the widely available MISER algorithm, to make new hybrid integrators. For a different kind of hybrid, we show how to use integrand samples, generated using MCMC or other methods, to optimize VEGAS+ before integrating. We give an example where preconditioned VEGAS+ is more than 100 times as efficient as VEGAS+ without preconditio ing. Finally, we give examples where VEGAS+ is more than 10 times as efficient as MCMC for Bayesian integrals with D = 3 and 21 parameters. We explain why VEGAS+ will often outperform MCMC for small and moderate sized problems.

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Computational Physics

Adaptive stabilized finite elements: Continuation analysis of compaction banding in geomaterials

Under compressive creep, visco-plastic solids experiencing internal mass transfer processes have been recently proposed to accommodate singular cnoidal wave solutions, as material instabilities at the stationary wave limit. These instabilities appear when the loading rate is significantly faster than the capability of the material to diffuse internal perturbations and lead to localized failure features (e.g., cracks and compaction bands). This type of solution, generally found in fluids, has strong nonlinearities and periodic patterns. Due to the singular nature of the solutions, the applicability of the theory is currently limited. Additionally, effective numerical tools require proper regularization to overcome the challenges that singularity induces. We focus on the numerical treatment of the governing equation using a nonlinear approach building on a recent adaptive stabilized finite element method. This method provides a residual representation to drive adaptive mesh refinement, a particularly useful feature for the problem at hand. We compare against analytical and standard finite element solutions to demonstrate the performance of our approach. We then investigate the sensitivity of the diffusivity ratio, main parameter of the problem, and identify multiple possible solutions, with multiple stress peaks. Finally, we show the evolution of the spacing between peaks for all solutions as a function of that parameter.

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Computational Physics

Add force and/or change underlying projection method to improve accuracy of Explicit Robin-Neumann and fully decoupled schemes for the coupling of incompressible fluid with thin-walled structure

This work aims at providing some novel and practical ideas to improve accuracy of some partitioned algorithms, precisely Fernandez's Explicit Robin-Neumann and fully decoupled schemes, for the coupling of incompressible fluid with thin-walled structure. Inspired by viscosity of fluid and justified by boundary layer theory, the force between fluid and structure corresponding to viscosity is increased. Numerical experiments demonstrate improvement of accuracy under such modification. To improve accuracy of fully decoupled schemes further, the underlying projection method is replaced.

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Computational Physics

An Accurate and Transferable Machine Learning Potential for Carbon

We present an accurate machine learning (ML) model for atomistic simulations of carbon, constructed using the Gaussian approximation potential (GAP) methodology. The potential, named GAP-20, describes the properties of the bulk crystalline and amorphous phases, crystal surfaces and defect structures with an accuracy approaching that of direct ab initio simulation, but at a significantly reduced cost. We combine structural databases for amorphous carbon and graphene, which we extend substantially by adding suitable configurations, for example, for defects in graphene and other nanostructures. The final potential is fitted to reference data computed using the optB88-vdW density functional theory (DFT) functional. Dispersion interactions, which are crucial to describe multilayer carbonaceous materials, are therefore implicitly included. We additionally account for long-range dispersion interactions using a semianalytical two-body term and show that an improved model can be obtained through an optimisation of the many-body smooth overlap of atomic positions (SOAP) descriptor. We rigorously test the potential on lattice parameters, bond lengths, formation energies and phonon dispersions of numerous carbon allotropes. We compare the formation energies of an extensive set of defect structures, surfaces and surface reconstructions to DFT reference calculations. The present work demonstrates the ability to combine, in the same ML model, the previously attained flexibility required for amorphous carbon [Phys. Rev. B, 95, 094203, (2017)] with the high numerical accuracy necessary for crystalline graphene [Phys. Rev. B, 97, 054303, (2018)], thereby providing an interatomic potential that will be applicable to a wide range of applications concerning diverse forms of bulk and nanostructured carbon.

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Computational Physics

An Eulerian Vlasov-Fokker-Planck Algorithm for Spherical Implosion Simulations of Inertial Confinement Fusion Capsules

We present a numerical algorithm that enables a phase-space adaptive Eulerian Vlasov-Fokker-Planck (VFP) simulation of an inertial confinement fusion (ICF) capsule implosion. The approach relies on extending a recent mass, momentum, and energy conserving phase-space moving-mesh adaptivity strategy to spherical geometry. In configuration space, we employ a mesh motion partial differential equation (MMPDE) strategy while, in velocity space, the mesh is expanded/contracted and shifted with the plasma's evolving temperature and drift velocity. The mesh motion is dealt with by transforming the underlying VFP equations into a computational (logical) coordinate, with the resulting inertial terms carefully discretized to ensure conservation. To deal with the spatial and temporally varying dynamics in a spherically imploding system, we have developed a novel nonlinear stabilization strategy for MMPDE in the configuration space. The strategy relies on a nonlinear optimization procedure that optimizes between mesh quality and the volumetric rate change of the mesh to ensure both accuracy and stability of the solution. Implosions of ICF capsules are driven by several boundary conditions: 1) an elastic moving wall boundary; 2) a time-dependent Maxwellian Dirichlet boundary; and 3) a pressure-driven Lagrangian boundary. Of these, the pressure-driven Lagrangian boundary driver is new to our knowledge. The implementation of our strategy is verified through a set of test problems, including the Guderley and Van-Dyke implosion problems --the first-ever reported using a Vlasov-Fokker-Planck model.

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Computational Physics

An Overview of Computational Fluid Structure Interaction: Methods and Applications

Over the past few decades, there has been a rapid improvement in computational power as well as techniques to simulate the real world phenomenon which has enabled us to understand the physics and develop new systems which outperform the existing ones. In the domain of multi-physics problems, fluid and structure interactions have been studied and various numerical methods are introduced to solve them. An extensive review of most commonly employed numerical techniques to solve fluid structure interaction(FSI) problems has been done in this article. It also becomes utmost important to understand the applicability of each method and hence a critical reasoning for usage of different methods has been provided. Application domains are presented which range from energy harvesting processes to simulation of human vocal cords and movement of bolus(food) inside esophagus. Suitable numerical methods applied for each application have also been discussed. Numerical methods developed so far are classified in particular groups based on the discretization, the manner in which coupling is performed and on the basis of meshing(division of entire domain into small blocks inside which variation of a variable is approximated). Challenges and instabilities posed by presently available numerical methods are discussed and potential applications where there is a possibility of errors due to these methods have been listed. A brief set of application areas which have not been explored through the lens of fluid structure interaction also have been discussed at the end of this article.

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