Ying Li
Texas A&M University
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Featured researches published by Ying Li.
Proceedings of the National Academy of Sciences of the United States of America | 2006
Dihua Shangguan; Ying Li; Zhiwen Tang; Zehui Charles Cao; Hui William Chen; Prabodhika Mallikaratchy; Kwame Sefah; Chaoyong James Yang; Weihong Tan
Using cell-based aptamer selection, we have developed a strategy to use the differences at the molecular level between any two types of cells for the identification of molecular signatures on the surface of targeted cells. A group of aptamers have been generated for the specific recognition of leukemia cells. The selected aptamers can bind to target cells with an equilibrium dissociation constant (Kd) in the nanomolar-to-picomolar range. The cell-based selection process is simple, fast, straightforward, and reproducible, and, most importantly, can be done without prior knowledge of target molecules. The selected aptamers can specifically recognize target leukemia cells mixed with normal human bone marrow aspirates and can also identify cancer cells closely related to the target cell line in real clinical specimens. The cell-based aptamer selection holds a great promise in developing specific molecular probes for cancer diagnosis and cancer biomarker discovery.
Journal of Proteome Research | 2008
Dihua Shangguan; Zehui Cao; Ling Meng; Prabodhika Mallikaratchy; Kwame Sefah; Hui Wang; Ying Li; Weihong Tan
Disease biomarkers play critical roles in the management of various pathological conditions of diseases. This involves diagnosing diseases, predicting disease progression and monitoring the efficacy of treatment modalities. While efforts to identify specific disease biomarkers using a variety of technologies has increased the number of biomarkers or augmented information about them, the effective use of disease-specific biomarkers is still scarce. Here, we report that a high expression of protein tyrosine kinase 7 (PTK7), a transmembrane receptor protein tyrosine kinase-like molecule, was discovered in a series of leukemia cell lines using whole cell aptamer selection. With the implementation of a two-step strategy (aptamer selection and biomarker discovery), combined with mass spectrometry, PTK7 was ultimately identified as a potential biomarker for T-cell acute lymphoblastic leukemia (T-ALL). Specifically, the aptamers for T-ALL cells were selected using the cell-SELEX process, without any prior knowledge of the cell biomarker population, conjugated with magnetic beads and then used to capture and purify their binding targets on the leukemia cell surface. This demonstrates that a panel of molecular aptamers can be easily generated for a specific type of diseased cells. It further demonstrates that this two-step strategy, that is, first selecting cancer cell-specific aptamers and then identifying their binding target proteins, has major clinical implications in that the technique promises to substantially improve the overall effectiveness of biomarker discovery. Specifically, our strategy will enable efficient discovery of new malignancy-related biomarkers, facilitate the development of diagnostic tools and therapeutic approaches to cancer, and markedly improve our understanding of cancer biology.
Analytical Chemistry | 2008
Dihua Shangguan; Ling Meng; Zehui Charles Cao; Zeyu Xiao; Xiaohong Fang; Ying Li; Diana M. Cardona; Rafal P. Witek; Chen Liu; Weihong Tan
Liver cancer is the third most deadly cancers in the world. Unfortunately, there is no effective treatment. One of the major problems is that most cancers are diagnosed in the later stage, when surgical resection is not feasible. Thus, accurate early diagnosis would significantly improve the clinical outcome of liver cancer. Currently, there are no effective molecular probes to recognize biomarkers that are specific for liver cancer. The objective of our current study is to identify liver cancer cell-specific molecular probes that could be used for liver cancer recognition and diagnosis. We applied a newly developed cell-SELEX (Systematic Evolution of Ligands by EXponential enrichment) method for the generation of molecular probes for specific recognition of liver cancer cells. The cell-SELEX uses whole live cells as targets to select aptamers (designed DNA/RNA) for cell recognition. In generating aptamers for liver cancer recognition, two liver cell lines were used: a liver cancer cell line BNL 1ME A.7R.1 (MEAR) and a noncancer cell line, BNL CL.2 (BNL). Both cell lines were originally derived from Balb/cJ mice. Through multiple rounds of selection using BNL as a control, we have identified a panel of aptamers that specifically recognize the cancer cell line MEAR with Kd in the nanomolar range. We have also demonstrated that some of the selective aptamers could specifically bind liver cancer cells in a mouse model. There are two major new results (compared with our reported cell-SELEX methodology) in addition to the generation of aptamers specifically for liver cancer. The first one is that our current study demonstrates that cell-based aptamer selection can select specific aptamers for multiple cell lines, even for two cell lines with minor differences (MEAR cell is derived from BNL by chemical inducement); and the second result is that cell-SELEX can be used for adhesive cells and thus open the door for solid tumor selection and investigation. The newly generated cancer-specific aptamers hold great promise as molecular probes for cancer early diagnosis and basic mechanism studies.
Environmental Science & Technology | 2011
Hailong Li; Chang-Yu Wu; Ying Li; Junying Zhang
CeO(2)-TiO(2) (CeTi) catalysts synthesized by an ultrasound-assisted impregnation method were employed to oxidize elemental mercury (Hg(0)) in simulated low-rank (sub-bituminous and lignite) coal combustion flue gas. The CeTi catalysts with a CeO(2)/TiO(2) weight ratio of 1-2 exhibited high Hg(0) oxidation activity from 150 to 250 °C. The high concentrations of surface cerium and oxygen were responsible for their superior performance. Hg(0) oxidation over CeTi catalysts was proposed to follow the Langmuir-Hinshelwood mechanism whereby reactive species from adsorbed flue gas components react with adjacently adsorbed Hg(0). In the presence of O(2), a promotional effect of HCl, NO, and SO(2) on Hg(0) oxidation was observed. Without O(2), HCl and NO still promoted Hg(0) oxidation due to the surface oxygen, while SO(2) inhibited Hg(0) adsorption and subsequent oxidation. Water vapor also inhibited Hg(0) oxidation. HCl was the most effective flue gas component responsible for Hg(0) oxidation. However, the combination of SO(2) and NO without HCl also resulted in high Hg(0) oxidation efficiency. This superior oxidation capability is advantageous to Hg(0) oxidation in low-rank coal combustion flue gas with low HCl concentration.
ACS Applied Materials & Interfaces | 2012
Liwen Ji; Ozan Toprakci; Mataz Alcoutlabi; Yingfang Yao; Ying Li; Shu Zhang; Bingkun Guo; Zhan Lin; Xiangwu Zhang
α-Fe(2)O(3) nanoparticle-loaded carbon nanofiber composites were fabricated via electrospinning FeCl(3)·6H(2)O salt-polyacrylonitrile precursors in N,N-dimethylformamide solvent and the subsequent carbonization in inert gas. Scanning electron microscopy, transmission electron microscopy, energy dispersive X-ray spectroscopy, X-ray photoelectron spectroscopy, X-ray diffraction, and elemental analysis were used to study the morphology and composition of α-Fe(2)O(3)-carbon nanofiber composites. It was indicated that α-Fe(2)O(3) nanoparticles with an average size of about 20 nm have a homogeneous dispersion along the carbon nanofiber surface. The resultant α-Fe(2)O(3)-carbon nanofiber composites were used directly as the anode material in rechargeable lithium half cells, and their electrochemical performance was evaluated. The results indicated that these α-Fe(2)O(3)-carbon nanofiber composites have high reversible capacity, good capacity retention, and acceptable rate capability when used as anode materials for rechargeable lithium-ion batteries.
Journal of Hazardous Materials | 2012
Hailong Li; Chang-Yu Wu; Ying Li; Liqing Li; Yongchun Zhao; Junying Zhang
MnO(x)-CeO(2) mixed-oxide supported on TiO(2) (Mn-Ce/Ti) was synthesized by an ultrasound-assisted impregnation method and employed to oxidize elemental mercury (Hg(0)) at 200°C in simulated coal combustion flue gas. Over 90% of Hg(0) oxidation was achieved on the Mn-Ce/Ti catalyst at 200°C under simulated flue gas representing those from burning low-rank coals with a high gas hourly space velocity of 60,000 h(-1). Gas-phase O(2) regenerated the lattice oxygen and replenished the chemisorbed oxygen, which facilitated Hg(0) oxidation. HCl was the most effective flue gas component responsible for Hg(0) oxidation. 10 ppm HCl plus 4% O(2) resulted in 100% Hg(0) oxidation under the experimental conditions. SO(2) competed with Hg(0) for active sites, thus deactivating the catalysts capability in oxidizing Hg(0). NO covered the active sites and consumed surface oxygen active for Hg(0) oxidation, hence limiting Hg(0) oxidation. Water vapor showed prohibitive effect on Hg(0) oxidation due to its competition with HCl and Hg(0) for active adsorption sites. This study provides information about the promotional or inhibitory effects of individual flue gas components on Hg(0) oxidation over a highly effective Mn-Ce/Ti catalyst. Such knowledge is of fundamental importance for industrial applications of the Mn-Ce/Ti catalyst in coal-fired power plants.
ACS Applied Materials & Interfaces | 2013
Leigang Xue; Guanjie Xu; Ying Li; Shuli Li; Kun Fu; Quan Shi; Xiangwu Zhang
Si has the highest theoretical capacity among all known anode materials, but it suffers from the dramatic volume change upon repeated lithiation and delithiation processes. To overcome the severe volume changes, Si nanoparticles were first coated with a polymer-driven carbon layer, and then dispersed in a CNT network. In this unique structure, the carbon layer can improve electric conductivity and buffer the severe volume change, whereas the tangled CNT network is expected to provide additional mechanical strength to maintain the integrity of electrodes, stabilize the electric conductive network for active Si, and eventually lead to better cycling performance. Electrochemical test result indicates the carbon-coated Si nanoparticles dispersed in CNT networks show capacity retention of 70% after 40 cycles, which is much better than the carbon-coated Si nanoparticles without CNTs.
Catalysis Science & Technology | 2012
Cunyu Zhao; Lianjun Liu; Qianyi Zhang; Jun Wang; Ying Li
Cerium-doped titanium oxide (Ce–TiO2) nanoparticles were prepared by a simple sol–gel method. Ce-doping decreased the crystal size of TiO2, increased the catalyst surface area, and inhibited the growth of rutile TiO2 crystals. Ce–TiO2 nanoparticles were also dispersed on SBA-15, mesoporous silica with one-dimensional pores, forming a Ce–TiO2/SBA-15 nanocomposite. The nanocomposite materials were well characterized and tested as photocatalysts to convert CO2 and H2O to value-added fuels, mainly CO and CH4, under UV-vis illumination. Compared with pristine TiO2, TiO2 doped by 1 or 3% Ce improved the production of CO by four times. The reason may be due to the facilitated charge transfer induced by the doped Ce ions, the higher surface area of the catalyst, as well as the stabilization of anatase phase. However, too high a Ce concentration reduced the catalytic activity, likely due to the formation of recombination centers. Compared with unsupported Ce–TiO2, Ce–TiO2 supported on SBA-15 remarkably enhanced the CO2 reduction rate. Ce–TiO2/SBA-15 with a Ti : Si ratio of 1 : 4 demonstrated 8-fold enhancement in CO production and 115-fold enhancement in CH4 production. By contrast, amorphous silica as the substrate was much inferior to SBA-15. The findings in this work reveal a promising nanostructured catalyst material for solar fuel production using CO2 and H2O as the feedstock.
Catalysis Science & Technology | 2014
Lianjun Liu; Cunyu Zhao; Daniel Pitts; Huilei Zhao; Ying Li
Photocatalytic reduction of CO2 with H2O vapor for CO production at a temperature of 150 °C was studied using porous MgO–TiO2 microspheres as the photocatalysts with the benefits of improved CO2 adsorption by incorporating MgO and enhanced products/intermediates desorption at a higher temperature. The MgO–TiO2 microspheres were fabricated by two methods: (1) a one-step spray pyrolysis method using TiO2 (P25) nanoparticles dispersed in Mg(NO3)2 solution as the precursors (Mg/Ti-SP), and (2) spray pyrolysis synthesis of pure TiO2 (P25) microspheres first and then wet-impregnation with MgO (Mg/Ti-WI). The two material synthesis methods led to different MgO dispersion on the TiO2 surface. For Mg/Ti-SP, the strong aggregation of MgO nanoparticles caused a rough surface of the MgO–TiO2 microsphere; while for Mg/Ti-WI, MgO was more uniformly deposited leading to a much smoother surface of the microsphere. The surface dispersion of MgO was found to significantly affect the performance of MgO–TiO2 in CO2 photoreduction. At the same MgO concentration, Mg/Ti-SP had more than two times higher activity than Mg/Ti-WI, and most importantly, little deactivation of the catalyst was observed on Mg/Ti-SP while Mg/Ti-WI started to deactivate after 1 to 2 h when the reactor was operating in a continuous flow mode. The ease of photo-induced electron transfer to the catalyst surface may have contributed to the superb activity of Mg/Ti-SP samples. The optimum MgO concentration was found to be 5% for both types of materials. Besides the dispersion of MgO, we also found that the CO2 adsorption–desorption dynamics strongly influenced the CO2 photoreduction. The results from in situ diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) revealed two advantages of Mg/Ti-SP over Mg/Ti-WI: (1) more abundant bicarbonates (important intermediates for CO production) on the surface and (2) easier desorption/transformation of intermediates.
Science of The Total Environment | 2010
Ying Li; Jacqueline MacDonald Gibson; Prahlad Jat; Gavino Puggioni; Mejs Hasan; J. Jason West; William Vizuete; Kenneth G. Sexton; Marc L. Serre
This study quantifies the national burden of disease attributed to particulate matter (PM) and ozone (O(3)) in ambient air in the United Arab Emirates (UAE), a rapidly growing nation in which economic development and climatic conditions pose important challenges for air quality management. Estimates of population exposure to these air pollutants are based on observed air quality data from fixed-site monitoring stations. We divide the UAE into small grid cells and use spatial-statistical methods to estimate the ambient pollutant concentrations in each cell based on the observed data. Premature deaths attributed to PM and O(3) are computed for each grid cell and then aggregated across grid cells and over a year to estimate the total number of excess deaths attributable to ambient air pollution. Our best estimate is that approximately 545 (95% CI: 132-1224) excess deaths in the UAE in the year 2007 are attributable to PM in ambient air. These excess deaths represent approximately 7% (95% CI: 2-17%) of the total deaths that year. We attribute approximately 62 premature deaths (95% CI: 17-127) to ground-level O(3) for the year 2007. Uncertainty in the natural background level of PM, due to the frequent dust storms occurring in the region, has significant impacts on the attributed mortality estimates. Despite the uncertainties associated with the integrated assessment framework, we conclude that anthropogenic ambient air pollution, in particular PM, causes a considerable public health impact in the UAE in terms of premature deaths. We discuss important uncertainties and scientific hypotheses to be investigated in future work that might help reduce the uncertainties in the burden of disease estimates.