A. B. Rubin
Moscow State University
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Featured researches published by A. B. Rubin.
Angewandte Chemie | 2010
Igor Nabiev; Aliaksandra Rakovich; Alyona Sukhanova; E. P. Lukashev; Vadim Zagidullin; Vladimir Pachenko; Yury P. Rakovich; John F. Donegan; A. B. Rubin; Alexander O. Govorov
The development of artificial photosynthetic systems that utilize solar energy is one of the most challenging goals of chemistry and material sciences. The straightforward way to construct an artificial photosynthetic device for practical solar fuel production for the practical use of solar energy is to mimic the structural and functional organization of the natural photosynthetic machinery. In photosynthetic organisms, light is initially absorbed by antenna protein–pigment complexes in which it induces an excited electronic state (exciton), and then excitons (or electron–hole pairs) are transferred by means of F rster resonance energy transfer (FRET) to specialist chlorophyll cofactors in specialized reaction centers (RCs); here, excitons dissociate into their constituent carriers which are used in chemical transformations for the synthesis of high-energy molecules that fuel the organism. An artificial device that mimics this process for solar energy conversion should include, among other components, an efficient light-harvesting antenna capable of transferring the excitation energy to the RC. Based on the principle of photosynthesis, a variety of artificial antenna systems have been developed using supramolecular chemistry in which dendrimers incorporate porphyrins or other organic fluorophores or organometallic complexes. Although efficient excitation-energy transfer was obtained in such systems, the use of organic fluorophores in light-harvesting systems is rather limited because of their narrow spectral windows for light-collecting and lack of photostability. Recently it was suggested that inorganic nanocrystals, which are able to collect light over a wide spectral window, may achieve significantly greater absorption than natural photosystems, thus enhancing and could thus be used to enhance the light-harvesting process. Simultaneously, these nanocrystals may also be very efficient in excitationenergy transfer. This has led us to contemplate the development of hybrid materials in which light energy harvested by the nanocrystals in the optical region may be transferred to the RC in order to enhance the efficiency of the photosynthetic process. The simplest and best understood photosynthetic RC is that found in purple bacteria (Rhodobacter sphaeroides, for example). Although RCs from different photosynthetic organisms vary in their structure and composition, they are always composed of complexes of pigments and proteins, and RC fromRb. sphaeroides is known to be a good model of all the photosynthetic RCs. Here, we demonstrate that photoluminescent quantum dots (QDs) of these selected photoluminescence (PL) wavelengths may be tagged with the RC of Rh. sphaeroides in such a way that FRET from the QD to the RC is realized (Figure 1). A nearly threefold increase in the rate of generation of excitons in the RC is demonstrated, and theoretical estimates predict even stronger enhancements, thus indicating that further optimization is possible. Advances in inorganic synthesis have resulted in the production of monodispersed QDs such as highly photoluminescent CdSe/ZnS core/shell and CdTe nanocrystals. The light absorption by these QDs appears as a quasicontinuous superposition of peaks with extinction coefficients orders of magnitude higher than those of organic molecules. QDs are ultrastable against photobleaching, and the quantum [*] Prof. I. Nabiev CIC NanoGUNE Consolider, 20018 San Sebastian (Spain) and EA n83798, Universit de Reims Champagne-Ardenne 51100 Reims (France) and Ikerbasque, Basque Foundation for Science 48011 Bilbao (Spain) Fax: (+34)943-574-001 E-mail: [email protected]
Ageing Research Reviews | 2014
M. Ya. Akhalaya; G. V. Maksimov; A. B. Rubin; J. Lademann; M.E. Darvin
The generation of ROS underlies all solar infrared-affected therapeutic and pathological cutaneous effects. The signaling pathway NF-kB is responsible for the induced therapeutic effects, while the AP-1 for the pathological effects. The different signaling pathways of infrared-induced ROS and infrared-induced heat shock ROS were shown to act independently multiplying the influence on each other by increasing the doses of irradiation and/or increasing the temperature. The molecular action mechanisms of solar infrared radiation and heat on human skin are summarized and discussed in detail in the present paper. The critical doses are determined. Protection strategies against infrared-induced skin damage are proposed.
Biochemistry | 2014
Alexandrina Stirbet; G. Yu. Riznichenko; A. B. Rubin; Govindjee
To honor Academician Alexander Abramovitch Krasnovsky, we present here an educational review on the relation of chlorophyll a fluorescence transient to various processes in photosynthesis. The initial event in oxygenic photosynthesis is light absorption by chlorophylls (Chls), carotenoids, and, in some cases, phycobilins; these pigments form the antenna. Most of the energy is transferred to reaction centers where it is used for charge separation. The small part of energy that is not used in photochemistry is dissipated as heat or re-emitted as fluorescence. When a photosynthetic sample is transferred from dark to light, Chl a fluorescence (ChlF) intensity shows characteristic changes in time called fluorescence transient, the OJIPSMT transient, where O (the origin) is for the first measured minimum fluorescence level; J and I for intermediate inflections; P for peak; S for semi-steady state level; M for maximum; and T for terminal steady state level. This transient is a real signature of photosynthesis, since diverse events can be related to it, such as: changes in redox states of components of the linear electron transport flow, involvement of alternative electron routes, the build-up of a transmembrane pH gradient and membrane potential, activation of different nonphotochemical quenching processes, activation of the Calvin-Benson cycle, and other processes. In this review, we present our views on how different segments of the OJIPSMT transient are influenced by various photosynthetic processes, and discuss a number of studies involving mathematical modeling and simulation of the ChlF transient. A special emphasis is given to the slower PSMT phase, for which many studies have been recently published, but they are less known than on the faster OJIP phase.
Photosynthesis Research | 2007
V. V. Makarova; Sergey Kosourov; Tatiana E. Krendeleva; Boris K. Semin; G. P. Kukarskikh; A. B. Rubin; Richard T. Sayre; Maria L. Ghirardi; Michael Seibert
Photoproduction of H2 was examined in a series of sulfur-deprived Chlamydomonas reinhardtii D1-R323 mutants with progressively impaired PSII photochemical activity. In the R323H, R323D, and R323E D1 mutants, replacement of arginine affects photosystem II (PSII) function, as demonstrated by progressive decreases in O2-evolving activity and loss of PSII photochemical activity. Significant changes in PSII activity were found when the arginine residue was replaced by negatively charged amino acid residues (R323D and R323E). However, the R323H (positively charged or neutral, depending on the ambient pH) mutant had minimal changes in PSII activity. The R323H, R323D, and R323E mutants and the pseudo-wild-type (pWt) with restored PSII function were used to study the effects of sulfur deprivation on H2-production activity. All of these mutants exhibited significant changes in the normal parameters associated with the H2-photoproduction process, such as a shorter aerobic phase, lower accumulation of starch, a prolonged anaerobic phase observed before the onset of H2-production, a shorter duration of H2-production, lower H2 yields compared to the pWt control, and slightly higher production of dark fermentation products such as acetate and formate. The more compromised the PSII photochemical activity, the more dramatic was the effect of sulfur deprivation on the H2-production process, which depends both on the presence of residual PSII activity and the amount of stored starch.
The Journal of Membrane Biology | 2004
A. A. Bulychev; N. A. Kamzolkina; J. Luengviriya; A. B. Rubin; Stefan C. Müller
Using pH microelectrodes and a Micro-scopy PAM (pulse-amplitude modulated) chlorophyll fluorometer, it is shown that a propagation of an action potential in Chara corallina leads to transient suppression of spatially periodic pH profiles along the illuminated cell. The suppression was manifested as a large pH decrease in the alkaline zones and a slight pH increase in the acid zones. The propagating action potential diminished the maximum yield of chlorophyll fluorescence (Fm′) in the alkaline cell regions, as well as the quantum yield of photosystem II photochemistry, without affecting Fm′ in the acid cell regions. The results indicate an interference of membrane excitation in the mechanisms responsible for pH banding patterns in Characean algae. Apparently, the electrical excitation of the plasma membrane in the alkaline cell regions initiates a pathway that can modulate membrane events at the thylakoid membrane.
Bioelectrochemistry | 2001
A. A. Bulychev; A. A. Cherkashin; A. B. Rubin; Wim J. Vredenberg; Vladimir S. Zykov; Stefan C. Müller
A novel experimental approach has been applied to investigate the relationship between pH banding in Chara cells and photosynthetic activity of chloroplasts located in cell regions adjacent to acid and alkaline bands. The combination of pH microelectrode technique with pulse amplitude modulation (PAM) microfluorimetry enabled parallel measurements of longitudinal pH profiles and chlorophyll fluorescence yield in acid and alkaline zones of individual Chara cells. The scanning with a pH-microelectrode along the cell length revealed the light-dependent pH pattern, i.e., alternating acid and alkaline bands with pH differences as large as 2 - 3 pH units. In parallel, measurements of chlorophyll fluorescence yield under actinic light were performed using PAM microfluorometry. It was found that the effective photochemical yield of photosystem II is substantially higher in acid than in alkaline zones. The results clearly show that the banding pattern is not confined solely to the plasmalemma but is also exhibited in alternating photosynthetic performance of the underlying chloroplast layer. Apparently, the acid regions enriched with CO2 ensure sufficient flow of this substrate to the Calvin cycle reactions, thus promoting the photosynthetic rate, whereas the alkaline zones devoid of CO2 favor radiative losses of absorbed solar energy in chloroplasts.
Biochemistry | 2012
Sergei P. Balashov; L. E. Petrovskaya; E. P. Lukashev; Eleonora S. Imasheva; Andrei K. Dioumaev; Jennifer M. Wang; Sergey V. Sychev; D. A. Dolgikh; A. B. Rubin; M. P. Kirpichnikov; Janos K. Lanyi
One of the distinctive features of eubacterial retinal-based proton pumps, proteorhodopsins, xanthorhodopsin, and others, is hydrogen bonding of the key aspartate residue, the counterion to the retinal Schiff base, to a histidine. We describe properties of the recently found eubacterium proton pump from Exiguobacterium sibiricum (named ESR) expressed in Escherichia coli, especially features that depend on Asp-His interaction, the protonation state of the key aspartate, Asp85, and its ability to accept a proton from the Schiff base during the photocycle. Proton pumping by liposomes and E. coli cells containing ESR occurs in a broad pH range above pH 4.5. Large light-induced pH changes indicate that ESR is a potent proton pump. Replacement of His57 with methionine or asparagine strongly affects the pH-dependent properties of ESR. In the H57M mutant, a dramatic decrease in the quantum yield of chromophore fluorescence emission and a 45 nm blue shift of the absorption maximum with an increase in the pH from 5 to 8 indicate deprotonation of the counterion with a pK(a) of 6.3, which is also the pK(a) at which the M intermediate is observed in the photocycle of the protein solubilized in detergent [dodecyl maltoside (DDM)]. This is in contrast with the case for the wild-type protein, for which the same experiments show that the major fraction of Asp85 is deprotonated at pH >3 and that it protonates only at low pH, with a pK(a) of 2.3. The M intermediate in the wild-type photocycle accumulates only at high pH, with an apparent pK(a) of 9, via deprotonation of a residue interacting with Asp85, presumably His57. In liposomes reconstituted with ESR, the pK(a) values for M formation and spectral shifts are 2-3 pH units lower than in DDM. The distinctively different pH dependencies of the protonation of Asp85 and the accumulation of the M intermediate in the wild-type protein versus the H57M mutant indicate that there is strong Asp-His interaction, which substantially lowers the pK(a) of Asp85 by stabilizing its deprotonated state.
Journal of Biological Physics | 1999
Galina Riznichenko; G. Lebedeva; Oleg Demin; A. B. Rubin
Principles of regulation on different levels of photosynthetic apparatus are discussed. Mathematical models of isolated photosynthetic reaction centers and general system of energy transduction in chloroplast are developed. A general approach to model these complex metabolic systems is suggested. Regulatory mechanisms in plant cell are correlated with the different patterns of fluorescence induction curve at different internal physiological states of the cells and external (environmental) conditions. Light regulation inside photosynthetic reaction centers, diffusion processes in thylakoid membrane, generation of transmembrane electrochemical potential, coupling with processes of CO2 fixation in Calvin Cycle are considered as stages of control of energy transformation in chloroplasts in their connection with kinetic patterns of fluorescence induction curves and other spectrophotometric data.
Biochimica et Biophysica Acta | 2014
Eugene G. Maksimov; Franz-Josef Schmitt; Evgeny A. Shirshin; M.D. Svirin; I.V. Elanskaya; Thomas Friedrich; Victor V. Fadeev; V.Z. Paschenko; A. B. Rubin
As high-intensity solar radiation can lead to extensive damage of the photosynthetic apparatus, cyanobacteria have developed various protection mechanisms to reduce the effective excitation energy transfer (EET) from the antenna complexes to the reaction center. One of them is non-photochemical quenching (NPQ) of the phycobilisome (PB) fluorescence. In Synechocystis sp. PCC6803 this role is carried by the orange carotenoid protein (OCP), which reacts to high-intensity light by a series of conformational changes, enabling the binding of OCP to the PBs reducing the flow of energy into the photosystems. In this paper the mechanisms of energy migration in two mutant PB complexes of Synechocystis sp. were investigated and compared. The mutant CK is lacking phycocyanin in the PBs while the mutant ΔPSI/PSII does not contain both photosystems. Fluorescence decay spectra with picosecond time resolution were registered using a single photon counting technique. The studies were performed in a wide range of temperatures - from 4 to 300 K. The time course of NPQ and fluorescence recovery in darkness was studied at room temperature using both steady-state and time-resolved fluorescence measurements. The OCP induced NPQ has been shown to be due to EET from PB cores to the red form of OCP under photon flux densities up to 1000 μmolphotonsm⁻²s⁻¹. The gradual changes of the energy transfer rate from allophycocyanin to OCP were observed during the irradiation of the sample with blue light and consequent adaptation to darkness. This fact was interpreted as the revelation of intermolecular interaction between OCP and PB binding site. At low temperatures a significantly enhanced EET from allophycocyanin to terminal emitters has been shown, due to the decreased back transfer from terminal emitter to APC. The activation of OCP not only leads to fluorescence quenching, but also affects the rate constants of energy transfer as shown by model based analysis of the decay associated spectra. The results indicate that the ability of OCP to quench the fluorescence is strongly temperature dependent. This article is part of a special issue entitled: photosynthesis research for sustainability: keys to produce clean energy.
BioSystems | 2011
N.E. Belyaeva; Franz-Josef Schmitt; V.Z. Paschenko; G. Yu. Riznichenko; A. B. Rubin; Gernot Renger
Our recently presented PS II model (Belyaeva et al., 2008) was improved in order to permit a consistent simulation of Single Flash Induced Transient Fluorescence Yield (SFITFY) traces that were earlier measured by Steffen et al. (2005) on whole leaves of Arabidopsis (A.) thaliana at four different energies of the actinic flash. As the essential modification, the shape of the actinic flash was explicitly taken into account assuming that an exponentially decaying rate simulates the time dependent excitation of PS II by the 10 ns actinic flash. The maximum amplitude of this excitation exceeds that of the measuring light by 9 orders of magnitude. A very good fit of the SFITFY data was achieved in the time domain from 100 ns to 10s for all actinic flash energies (the maximum energy of 7.5 × 10¹⁶ photons/(cm²flash) is set to 100%, the relative energies of weaker actinic flashes were of ∼8%, 4%, ∼1%). Our model allows the calculation and visualization of the transient PS II redox state populations ranging from the dark adapted state, via excitation energy and electron transfer steps induced by pulse excitation, followed by final relaxation into the stationary state eventually attained under the measuring light. It turned out that the rate constants of electron transfer steps are invariant to intensity of the actinic laser flash. In marked contrast, an increase of the actinic flash energy by more than two orders of magnitude from 5.4×10¹⁴ photons/(cm²flash) to 7.5×10¹⁶ photons/(cm²flash), leads to an increase of the extent of fluorescence quenching due to carotenoid triplet (³Car) formation by a factor of 14 and of the recombination reaction between reduced primary pheophytin (Phe(-)) and P680(+) by a factor of 3 while the heat dissipation in the antenna complex remains virtually constant. The modified PS II model offers new opportunities to compare electron transfer and dissipative parameters for different species (e.g. for the green algae and the higher plant) under varying illumination conditions.