A. M. Baró

WSXM: A software for scanning probe microscopy and a tool for nanotechnology

In this work we briefly describe the most relevant features of WSXM, a freeware scanning probe microscopy software based on MS-Windows. The article is structured in three different sections: The introduction is a perspective on the importance of software on scanning probe microscopy. The second section is devoted to describe the general structure of the application; in this section the capabilities of WSXM to read third party files are stressed. Finally, a detailed discussion of some relevant procedures of the software is carried out.

Properties of Metallic Nanowires: From Conductance Quantization to Localization

Material structures of reduced dimensions exhibit electrical and mechanical properties different from those in the bulk. Measurements of room-temperature electronic transport in pulled metallic nanowires are presented, demonstrating that the conductance characteristics depend on the length, lateral dimensions, state and degree of disorder, and elongation mechanism of the wire. Conductance during the elongation of short wires (length l ∼ 50 angstroms) exhibits periodic quantization steps with characteristic dips, correlating with the order-disorder states of layers of atoms in the wire predicted by molecular dynamics simulations. The resistance R of wires as long as l ∼ 400 angstroms exhibits localization characteristics with In R(l) ∼ l2.

Jumping mode scanning force microscopy

In this letter, we present a new scanning probe microscopy mode, jumping mode, which allows the simultaneous measurement of the topography and of some other physical property of the sample. Essentially, at each image point first the topography of the sample is measured during a feedback phase of a cycle, and then the tip–sample interaction is evaluated in real time as the tip is moved away and towards the sample. Since the lateral motion is done out of contact the method is free, or nearly free, of shear forces. The general advantages of jumping mode are discussed. Finally, two different applications of this mode are presented. In addition to the topography, the first application measures the adhesion between the tip and the sample, while the second determines the corresponding electrostatic interaction.

DNA height in scanning force microscopy

The measured height of DNA molecules adsorbed on a mica substrate by scanning probe microscopy is always less than the theoretical diameter. In this paper we show that, when imaged in ambient conditions, the molecules are usually immersed in the salt layer used to adsorb them to the substrate. This layer distorts the measurement of DNA height and is the main source of error but not the only one. We have performed different experiments to study this problem using two scanning force techniques: non-contact tapping mode in air and jumping mode in aqueous solution, where the dehydration phenomena is minimized. Height measurements of DNA in air using tapping mode reveal a height of 0.7+/-0.2nm. This value increases up to 1.5+/-0.2nm when the salt layer, in which the molecules are embedded, is removed. Jumping experiments in water give a value of 1.4+/-0.3nm when the maximum applied force is 300pN and 1.8+/-0.2nm at very low forces, which confirms the removal of the salt layer. Still, in all our experiments, the measured height of the DNA is less than the theoretical value. Our results show that although the salt layer present is important, some sample deformation due to either the loading force of the tip or the interaction with the substrate is also present.

Contactless experiments on individual DNA molecules show no evidence for molecular wire behavior

A fundamental requirement for a molecule to be considered a molecular wire (MW) is the ability to transport electrical charge with a reasonably low resistance. We have carried out two experiments that measure first, the charge transfer from an electrode to the molecule, and second, the dielectric response of the MW. The latter experiment requires no contacts to either end of the molecule. From our experiments we conclude that adsorbed individual DNA molecules have a resistivity similar to mica, glass, and silicon oxide substrates. Therefore adsorbed DNA is not a conductor, and it should not be considered as a viable candidate for MW applications. Parallel studies on other nanowires, including single-walled carbon nanotubes, showed conductivity as expected.

A soluble and highly functional polyaniline–carbon nanotube composite

A completely soluble polyaniline-multi-wall carbon nanotube (CNT–PANI) composite with drastically enhanced conductivity, improved thermal stability, and luminescent behaviour, has been synthesized. The presence of straight multi-wall carbon nanotubes during the polymerization of aniline induces the formation of a more planar conformation of polyaniline which acts as coating layer for the carbon nanotubes and leads to favourable interaction between the constituents. The polyaniline-coated multi-wall carbon nanotubes align into bundles and form a three-dimensional network in the overall composite. A highly functional carbon nanotube composite completely soluble in n-methylpyrrolidinone (NMP) exhibiting all the favourable processing and transformation possibilities of PANI has been obtained. These findings have important consequences for practical technological applications, especially for the development of opto-electronic devices.

Seeing molecular orbitals

Abstract We present results on a well known system, C 60 on Si(111)(7×7), which show that the scanning tunneling microscope (STM) is probing a single molecular orbital (MO). This MO, after comparison of experimental intramolecular structure with ab initio calculations, arises from the highest occupied MO (HOMO). The adsorbed molecules keep their relevant electronic identity but suffer a decrease in their icosahedral symmetry. The nature of the chemical bonding is proposed as being responsible for selecting one single MO in the imaging mechanisms. Our results represent an example of a strongly interacting system that can be interpreted with a great level of detail, overcoming substrate complexities.

Electrostatic force gradient signal: resolution enhancement in electrostatic force microscopy and improved Kelvin probe microscopy

In the present work the electrostatic interaction of a real scanning force microscopy (SFM) probe with a sample is studied theoretically as well as experimentally. To model the probe, a complex system composed of a macroscopic cantilever, a mesoscopic tip cone and a nanometric tip apex is proposed. The corresponding interaction is calculated analytically by means of an appropriate approximation. In most experimental situations we find that the total interaction is dominated by the cantilever and/or the tip cone and not by the tip apex. Experimental determination of tip–sample interaction supports this model. In addition, we find that a real SFM probe may lead to misinterpretation of experimental data in the so-called Kelvin probe microscopy (KPM). Again, experimental data confirm that the effects described by the model we propose may induce severe errors in KPM. As shown in this work, the resolution in KPM and electrostatic force microscopy is dramatically enhanced and data interpretation simplified if the force gradient rather than the force is used as signal source for the electrostatic interaction.

Lock‐in technique for measuring friction on a nanometer scale

A method for measuring friction forces on a nanometer scale is described. This method combines a lock‐in technique with scanning force and friction microscopy. Essentially, a lock‐in amplifier is used to determine the amplitude of the friction loop, which is measured at high frequency. To demonstrate the capability of this method, the dependence of the friction force with normal load is measured and a two dimensional image is presented.

Biochemical, Ultrastructural, and Reversibility Studies on Huntingtin Filaments Isolated from Mouse and Human Brain

Huntingtons disease (HD) and eight additional inherited neurological disorders are caused by CAG triplet-repeat expansions leading to expanded polyglutamine-sequences in their respective proteins. These triplet-CAG repeat disorders have in common the formation of aberrant intraneuronal proteinaceous inclusions containing the expanded polyglutamine sequences. These aggregates have been postulated to contribute to pathogenesis caused by conformational toxicity, sequestration of other polyglutamine-containing proteins, or by interfering with certain enzymatic activities. Testing these hypotheses has been hampered by the difficulty to isolate these aggregates from brain. Here we report that polyglutamine aggregates can be isolated from the brain of the Tet/HD94 conditional mouse model of HD, by following a method based on high salt buffer homogenization, nonionic detergent extraction, and gradient fractionation. We then verified that the method can be successfully applied to postmortem HD brains. Immunoelectron microscopy, both in human and mouse samples, revealed that the stable component of the inclusions are mutant huntingtin-containing and ubiquitin-containing fibrils. Atomic-force microscopy revealed that these fibrils have a “beads on a string” morphology. Thus, they resemble the in vitro assembled filaments made of recombinant mutant-huntingtin, as well as the Aβ and α-synuclein amyloid protofibrils. Finally, by shutting down transgene expression in the Tet/HD94 conditional mouse model of HD, we were able to demonstrate that these filaments, although stable in vitro, are susceptible to revert in vivo, thus demonstrating that the previously reported reversal of ubiquitin-immunoreactive inclusions does not simply reflect disassembling of the inclusions into their constituent fibrils and suggesting that any associated conformational or protein-sequestration toxicity is also likely to revert.