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Featured researches published by A. Nur Çakar.


Biomaterials | 2001

EGF containing gelatin-based wound dressings.

Kezban Ulubayram; A. Nur Çakar; Petek Korkusuz; Cemile Ertan; Nesrin Hasirci

In case of bulk loss of tissue or non-healing wounds such as burns, trauma, diabetic, decubitus and venous stasis ulcers, a proper wound dressing is needed to cover the wound area, protect the damaged tissue, and if possible to activate the cell proliferation and stimulate the healing process. In this study, synthesis of a novel polymeric bilayer wound dressing containing epidermal growth-factor (EGF) -loaded microspheres was aimed. For this purpose, a natural, nontoxic and biocompatible material, gelatin, was chosen as the underlying layer and various porous matrices in sponge form were prepared from gelatin by freeze-drying technique. As the external layer, elastomeric polyurethane membranes were used. Two different doses of EGF was added into the prepared gelatin sponges (1 and 15 microg/cm2) to activate cell proliferation. EGF addition was carried out either in free form or within microspheres to achieve prolonged release of EGF for higher efficiency. The prepared systems were tested in in vivo experiments on full-thickness skin defects created on rabbits. At certain intervals, wound areas were measured and tissues from wound areas were biopsied and processed for histological examinations. The wound areas decreased upon low-dose EGF application but the difference between the affects of free EGF and microsphere loaded EGF was not so distinct. Upon increasing the dose of EGF by a factor of 15, it was observed that controlled release of EGF from microspheres provided a higher degree of reduction in the wound areas. Histological investigations showed that the prepared dressings were biocompatible and did not cause any mononuclear cell infiltration or foreign body reaction. The structure of the newly formed dermis was almost the same as that of the normal skin.


Cytometry | 1997

An artificial intelligent diagnostic system on differential recognition of hematopoietic cells from microscopic images

Meral Beksac; M. Sinan Beksac; V. Bahadır Tipi; H. Ali Duru; M. Ümit Karakaş; A. Nur Çakar

Despite their advantages, none of the automated white blood cell differentiated counters have replaced the conventional microscopic evaluations of blood and bone marrow slides by hematologists. We have analyzed the smears of 39 patients and 8 control subjects to develop an artificial expert system that recognizes 16 different types of nucleated hematopoietic cells during the stages of differentiation. A charge coupled television camera and a special frame grabber were used for data acquisition, and 247 nucleated cell images were transferred from a microscope to an IBM 386 computer to be processed. One hundred sixty-five and 82 of these images were used for training and testing, respectively. Our system is composed of image processing and analysis (enhancement, thresholding/smoothing, edge detection), pattern recognition (feature extraction and classification with supervised artificial neural network), and expert system development. Image processing and analysis were used to obtain 13 cellular features to be used as the input parameters (neurons) of the artificial neural network. A supervised artificial neural network (back-propagation learning algorithm) was used in the classification of 16 different cells (output neurons of the neural network), which is the second step of pattern recognition. A confusion matrix has been developed to compare the similarities and dissimilarities between the differential recognitions of the hematologist and the expert system. The discriminatory power of the procedure is statistically significant: Q = (N - n.K)2/N.(K - 1) = 28.2. The sensitivity and the specificity of the expert system were 71.4% and 90.9%, respectively.


Annals of Anatomy-anatomischer Anzeiger | 1998

Endoglin (CD 105) expression in human lymphoid organs and placenta

Attila Dagdeviren; Sevda Muftuoglu; A. Nur Çakar; Ülken Örs

Endoglin (CD 105) is a cell surface antigen widely expressed on vascular endothelium, syncytiotrophoblast, some tissue macrophages, certain culture cells (including early leukemic B-lineage) and some endothelial cell lines. Though its relation to the transforming growth factor-beta (TGF-beta) receptor system is well documented, its function and detailed pattern of expression still remain to be clarified. We examined the differential tissue distribution of endoglin in human lymphoid organs and placenta with several anti-CD 105 monoclonal antibodies (mAbs) using an indirect immunoperoxidase technique, and performed semi-quantitative measurements using an image-analyzing system for comparison. Arterial, venous and capillary endothelia in these organs were reactive with anti-CD 105 mAbs at varying intensities. Interestingly, a distinctly stronger staining pattern was observed in the high endothelial venules (HEVs) which may indicate a special role for endoglin in lymphocyte trafficking. Syncytiotrophoblast expressed endoglin strongly on their apical cell membrane. Extravillous trophoblasts at certain locations selectively expressed endoglin on their cell membranes, suggesting a special role for this surface antigen during trophoblast differentiation.


Annals of Anatomy-anatomischer Anzeiger | 1999

Vasculogenesis in early human placental villi: an ultrastructural study.

Esin Asan; Figen Kaymaz; A. Nur Çakar; Attila Daǧdeviren; M. Sinan Beksac

In this study we examined the chorionic villi of 5 normal human placentas at 12-14 weeks of gestation ultrastructurally with regard to differentiation of the vascular components. The aim of the present report is to discuss the factors influencing vasculogenesis (in situ formation of blood vessels) at the ultrastructural level. Our observations have led us to think that the cytotrophoblast influences vasculogenesis in human chorionic villi. Mesenchymal-preendothelial cell groups were always found in very close association with the cytotrophoblast at the periphery of the villi, forming blood vessels. The cytotrophoblast probably attracts mesenchymal cells towards the margin of the villi by secreting vascular endothelial growth factor (VEGF). Once cells attach to the trophoblastic basement membrane they begin to differentiate into endothelial cells. This close structural relation between two cell types (cytotrophoblast and mesenchymal cells) may not be the only mechanism controlling vasculogenesis, but it seems to be one of the factors influencing the differentiation of mesenchymal cells into the endothelial cells of blood vessels in early human chorionic villi.


Journal of Child Neurology | 2002

Expression of adhesion and extracellular matrix molecules in the developing human brain

Banu Anlar; Pergin Atilla; A. Nur Çakar; M. Faruk Kose; M. Sinan Beksac; Atilla Dagdeviren; Zuhal Akçören

Cell adhesion molecules and extracellular matrix molecules have important roles in cell migration and connection. Their developmental expression has not been fully described in humans. In this report, these molecules were examined by immunohistochemistry in frontal tissue samples from 14- to 28-week-old fetuses aborted for obstetric reasons (n = 20) and four fetuses with nervous system abnormalities. Neural cell adhesion molecule (NCAM), tenascin, and laminin were expressed after 17 weeks. Neural cell adhesion molecule was observed in the neuropil, whereas tenascin and laminin also had cellular and vascular expression. Thrombospondin and fibronectin, apparent after 14 weeks, showed a redistribution from periventricular to outer cortical layers after midgestation. N-cadherin and integrin were observed in mid- and late gestation. Maternal or environmental conditions seemed to influence the pattern of expression. Fetuses with nervous system abnormalities had altered expression of several molecules. The descriptive data obtained in this study might constitute a basis for further studies investigating the role of these molecules in developmental abnormalities of the brain. (J Child Neurol 2002;17:707-713).


Life Sciences | 2011

Cyclosporine A-induced acute hepatotoxicity in guinea pigs is associated with endothelin-mediated decrease in local hepatic blood flow

Ş. Remzi Erdem; Selda Emre-Aydıngöz; Pergin Atilla; A. Nur Çakar; Turgay Dalkara; Hayrunnisa Bolay; Meral Tuncer

AIMS To bring further insight into the mechanism of cyclosporine A (CsA)-induced hepatotoxicity, the acute effect of CsA on local hepatic blood flow (LHBF) and its association with systemic hemodynamics, histopathological and biochemical indicators of liver toxicity were studied in guinea pigs in vivo. The association of endothelin (ET) and/or Cremophor-EL (C-EL, vehicle in parenteral CsA preparation) with CsA effects was also investigated. MAIN METHODS Animals were assigned into five groups; control, CsA, C-EL, Bosentan (non-selective ET receptor antagonist)+CsA, and BQ-123 (ET(A) receptor antagonist)+CsA. CsA was infused intravenously (i.v.) at 20 and 10mg/kg doses by 15 min interval. Antagonists were administered 15 min before CsA infusion. LHBF and mean arterial blood pressure (MAP) changes were simultaneously recorded. Blood and liver samples were collected for biochemical and histopathological examinations. KEY FINDINGS CsA, but not C-EL, decreased LHBF by 53.3% at the end of 30 min. Although being non-significant, CsA slightly increased MAP suggesting that, CsA-induced acute decrease in LHBF was likely independent of MAP changes. Bosentan (5mg/kg, i.v.) and BQ-123 (1mg/kg, i.v.) pre-treatments prevented the CsA-induced decrease in LHBF suggesting that CsA decreases LHBF through an ET-related mechanism. Additionally, CsA, but not its vehicle C-EL, caused marked acute pathological changes in the liver morphology. SIGNIFICANCE CsA-induced findings of acute hepatotoxicity were prevented by bosentan and BQ-123 pre-treatments. Thus, CsA seems to exert acute hepatotoxic effect through ET-related mechanisms.


Gynecologic and Obstetric Investigation | 2006

Activation Antigens during the Proliferative and Secretory Phases of Endometrium and Early-Pregnancy Decidua

Yesim Ugur; A. Nur Çakar; M. Sinan Beksac; Attila Dagdeviren

Background: Clarifying the normal distribution of activation antigens will contribute to database construction studies of monoclonal-antibody-based therapies in endometrial disorders. Methods: In this study, endometrial tissue samples obtained during proliferative and secretory phases and decidual samples of early pregnancies were immunostained by the monoclonal antibodies anti-CD26, anti-CD30, anti-CD70, anti-CD71, and anti-CD98 using the indirect immunoperoxidase method. Results: CD26 is expressed on the glandular epithelium in the endometrium and decidua. Endothelial CD26 is expressed less in the decidua when compared to the endometrium. CD30 is strongly expressed by decidual cells. It is only weakly expressed on endometrial and decidual vessels. Glandular and endothelial CD70 expression is mainly seen in the proliferative phase of the menstrual cycle. Glandular CD71 expression is less in the decidua when compared to the endometrium. Its expression on stromal cells is more in the secretory phase of the menstrual cycle and in early pregnancy deciduae. It is expressed on endometrial vessels but not on decidual vessels. Glandular CD98 is expressed more in the decidua when compared to the endometrium. This antigen exists on endometrial lymphocytes. It is strongly expressed on the endothelium in the endometrium and decidua. Conclusion: It seems that CD26 and CD70 are not involved in the functions of endometrial and decidual stromal cells. CD30 and CD71 are thought to be involved in decidualization. Absence of activation antigens other than CD98 on lymphocytes indicated an antigenic profile for large granular lymphocytes that is different from regular lymphocytes.


international conference on image processing | 1996

A hybrid intelligent diagnostic system based on neural networks and image analysis techniques in the field of automated cytogenetics

Selim Eskiizmirliler; Aydan M. Erkmen; Funda Başaran; A. Nur Çakar

We introduce a hybrid intelligent karyotyping system based on two different types of artificial neural networks (ANNs) and chromosomes features obtained by digital image processing techniques. A microscope equipped with a CCTV camera and a microcomputer including a frame grabber are the basic components of our hardware set-up. The inputs to the ANN structure are obtained directly from digital chromosome images by using two recently developed object detection and object skeletonizing algorithms. Moreover, the band patterns of chromosomes are represented by applying wavelet transform techniques on the gray level profiles of chromosomes. The network parameters are determined by using the results of many training and testing experiments in order to reach an optimal state from the classification performance point of view.


Early Human Development | 1990

Development of the human renal inner medullary interstitial cells

A. Nur Çakar

Two cell types were identified in the inner medulla and papilla of four fetal kidneys of 16 1/7-, 17 3/7-, 21 1/7- and 25 5/7-week-old (menstrual): undifferentiated mesenchymal cells and some highly differentiated cells which contained some lipid granules, lysosomes, smooth and rough endoplasmic reticulum. The structure of these cells resembled the two cell types which were observed in the adult tissue.


European Journal of Obstetrics & Gynecology and Reproductive Biology | 1995

An artificial intelligent diagnostic system with neural networks to determine genetical disorders and fetal health by using maternal serum markers

M. Sinan Beksac; Bülent Durak; Ömer Özkan; A. Nur Çakar; Sevim Balci; Ümit Karakaş; Yahya Laleli

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Aydan M. Erkmen

Middle East Technical University

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Selim Eskiizmirliler

Middle East Technical University

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