A. Sewalem

Relationship Between Reproduction Traits and Functional Longevity in Canadian Dairy Cattle

The aim of this study was to use survival analysis to assess the relationship between reproduction traits and functional longevity of Canadian dairy cattle. Data consisted of 1,702,857; 67,470; and 33,190 Holstein, Ayrshire, and Jersey cows, respectively. Functional longevity was defined as the number of days from first calving to culling, death, or censoring; adjusted for the effect of milk yield. The reproduction traits included calving traits (calving ease, calf size, and calf survival) and female fertility traits (number of services, days from calving to first service, days from first service to conception, and days open). The statistical model was a Weibull proportional hazards model and included the fixed effects of stage of lactation, season of production, the annual change in herd size, and type of milk recording supervision, age at first calving, effects of milk, fat, and protein yields calculated as within herd-year-parity deviations for each reproduction trait. Herd-year-season of calving and sire were included as random effects. Analysis was performed separately for each reproductive trait. Significant associations between reproduction traits and longevity were observed in all breeds. Increased risk of culling was observed for cows that required hard pull, calved small calves, or dead calves. Moreover, cows that require more services per conception, a longer interval between first service to conception, an interval between calving to first service greater than 90 d, and increased days open were at greater risk of being culled.

Genetic parameters of adaptive immune response traits in Canadian Holsteins

The objectives of this study were to estimate genetic parameters of cell-mediated (CMIR) and antibody-mediated (AMIR) immune response (IR) traits of Holstein cattle on a national scale and to associate estimated breeding values of CMIR, AMIR, and overall IR with routinely evaluated traits in Canada. In collaboration with the Canadian Bovine Mastitis Research Network, 445 Holstein cows from 42 herds across Canada were immunized to measure delayed-type hypersensitivity as an indicator of CMIR and serum antibody for AMIR to putative type 1 and type 2 test antigens, respectively. Primary (d 14) and secondary (d 21) AMIR were measured for both IgG1 and IgG2. A series of uni- and bivariate linear animal models were used to estimate genetic parameters and breeding values for CMIR and the 4 AMIR traits. The models included the fixed effects of parity and stage of lactation and the random effects of herd-technician, animal, and residual. Heritability of CMIR was 0.19 (SE=0.10) and for AMIR traits ranged from 0.16 to 0.41 (SE=0.09-0.11) depending on time and antibody isotype. The genetic correlations between CMIR and AMIR were negative and ranged from -0.13 to -0.45 (SE=0.32-0.46). The results indicate adaptive immune response traits are moderately heritable and provide a potential for genetic selection. The negative genetic correlations between CMIR and AMIR indicate the importance of considering both traits in breeding for overall disease resistance. Significant beneficial associations between the reproductive traits number of services and first service to conception were found, which may indicate these reproductive traits would improve with genetic selection for enhanced immune response.

Genetic and environmental relationships between body condition score and milk production traits in Canadian Holsteins.

The objective of this research was to estimate genetic parameters of first-lactation body condition score (BCS), milk yield, fat percentage (Fat%), protein percentage (Prot%), somatic cell score (SCS), milk urea nitrogen (MUN), lactose percentage (Lact%), and fat to protein ratio (F:P) using multiple-trait random regression animal models. Changes in covariances between BCS and milk production traits on a daily basis have not been investigated before and could be useful for determining which BCS estimated breeding values (EBV) might be practical for selection in the future. Field staff from Valacta milk recording agency (Sainte-Anne-de-Bellevue, QC, Canada) collected BCS from Québec herds several times per cow throughout the lactation. Average daily heritabilities and genetic correlations among the various traits were similar to literature values. On an average daily basis, BCS was genetically unfavorably correlated with milk yield (i.e., increased milk yield was associated with lower body condition). The unfavorable genetic correlation between BCS and milk yield became stronger as lactation progressed, but was equivalent to zero for the first month of lactation. Favorable genetic correlations were found between BCS with Prot%, SCS, and Lact% (i.e., greater BCS was associated with greater Prot%, lower SCS, and greater Lact%). These correlations were strongest in early lactation. On an average daily basis, BCS was not genetically correlated with Fat% or MUN, but was negatively correlated with F:P. Furthermore, BCS at 5 and 50 d in milk (DIM) had the most favorable genetic correlations with milk production traits over the lactation (at 5, 50, 150, and 250 DIM). Thus, early lactation BCS EBV shows potential for selection. Regardless, this study showed that the level of association BCS has with milk production traits is not constant over the lactation. Simultaneous selection for both BCS and milk production traits should be considered, mainly due to the unfavorable genetic correlation between BCS with milk yield.

Genetic relationships between body condition score and reproduction traits in Canadian Holstein and Ayrshire first-parity cows

The objective of this study was to investigate the genetic relationship between body condition score (BCS) and reproduction traits for first-parity Canadian Ayrshire and Holstein cows. Body condition scores were collected by field staff several times over the lactation in herds from Québec, and reproduction records (including both fertility and calving traits) were extracted from the official database used for the Canadian genetic evaluation of those herds. For each breed, six 2-trait animal models were run; they included random regressions that allowed the estimation of genetic correlations between BCS over the lactation and reproduction traits that are measured as a single lactation record. Analyses were undertaken on data from 108 Ayrshire herds and 342 Holstein herds. Average daily heritabilities of BCS were close to 0.13 for both breeds; these relatively low estimates might be explained by the high variability among herds and BCS evaluators. Genetic correlations between BCS and interval fertility traits (days from calving to first service, days from first service to conception, and days open) were negative and ranged between -0.77 and -0.58 for Ayrshire and between -0.31 and -0.03 for Holstein. Genetic correlations between BCS and 56-d nonreturn rate at first insemination were positive and moderate. The trends of these genetic correlations over the lactation suggest that a genetically low BCS in early lactation would increase the number of days that the primiparous cow was not pregnant and would decrease the chances of the primiparous cow to conceive at first service. Genetic correlations between BCS and calving traits were generally the strongest at calving and decreased with increasing days in milk. The correlation between BCS at calving and maternal calving ease was 0.21 for Holstein and 0.31 for Ayrshire and emphasized the relationship between fat cows around calving and dystocia. Genetic correlations between calving traits and BCS during the subsequent lactation were moderate and favorable, indicating that primiparous cows with a genetically high BCS over the lactation would have a greater chance of producing a calf that survived (maternal calf survival) and would transmit the genes that allowed the calf to be born more easily (maternal calving ease) and to survive (direct calving ease).

Short communication: Genetic parameters of milking temperament and milking speed in Canadian Holsteins

The objectives of this study were to estimate genetic parameters of milking temperament (MT) and milking speed (MS) in Canadian Holsteins and to examine associations of bull proofs of MT and MS with other economically important traits. First-lactation data consisted of 1,940,092 and 2,620,175 cows for MT and MS, respectively. Milking temperament and MS were recorded on a scale from 1 to 5 from very nervous to very calm and from very slow to very fast, respectively. The linear animal model included the fixed effects of herd-year-season of calving, stage of lactation, age at first calving, and the random effects of animal and residual. Both single-trait and bivariate analyses were carried out to estimate genetic parameters of MT and MS. For genetic parameter estimation, 20,000 records from randomly selected herds were used. However, for breeding value estimation, all records were included. Heritability values were 0.128 and 0.139 for MT and MS, respectively. The genetic correlation between MT and MS was 0.247. Analysis of bull proof correlation of MT and MS with other traits indicated that these traits were lowly correlated with a wide range of traits such as production, reproduction, conformation, and auxiliary traits.

Genetic parameters for hoof lesions and their relationship with feet and leg traits in Canadian Holstein cows

The objectives were (1) to estimate the genetic parameters and breeding values of hoof lesions, (2) to estimate the phenotypic effect of each feet and legs conformation traits on hoof lesions, and (3) to estimate genetic correlations between hoof lesions with feet and legs conformation traits. The presence or absence of specific hoof lesions was recorded for each hoof. Lesions were classified into infectious (digital and interdigital dermatitis, foot rot, and heel erosion), horn (sole and toe ulcer, sole hemorrhage, and white line disease), and other lesions (interdigital hyperplasia, fissures, thin soles, and corkscrew claw). A total of 34,905 hoof health records from 27,179 cows and 365 herds, collected by 18 different hoof-trimmers in Ontario, Alberta, and British Columbia, were analyzed using linear animal models. In addition, 5 feet and leg conformation traits (foot angle, heel depth, bone quality, rear leg side view, and rear leg rear view) and locomotion from primiparous cows were considered (n=11,419 and 6,966 cows, for conformation traits and locomotion, respectively). At least one lesion was found in nearly 40% of the hoof trimming records. The heritability estimates for hoof lesions ranged from 0.01 for front horn lesions to 0.09 for rear infectious lesions. Despite the low heritability estimates, we observed large variability in sire estimated breeding value (EBV) for resistance to hoof lesions. Positive genetic correlations were found between the occurrence of front and rear infectious lesions (0.77) and between front and rear horn lesions (0.61), but not between infectious and horn lesions (0.08). For most of the conformation traits, low scores were phenotypically associated with higher incidence of horn lesions, whereas we found no evidence of a phenotypic effect of feet and leg traits on infectious lesions. The heritability of the conformation traits ranged from 0.04 for rear leg rear view to 0.22 for bone quality, whereas that for locomotion was 0.03. The genetic correlations between hoof lesions and conformation traits were low to moderate, yet most of the estimates were associated with high standard errors. In conclusion, although hoof lesions are lowly heritable traits, sufficient genetic variation exists (as evidenced by large variability in sire EBV) for genetic improvement through direct selection in the long term. Standardization of hoof health data collection is encouraged.

Relationship between female fertility and production traits in Canadian Holsteins.

The objectives of this study were a) to estimate the genetic correlation between milk production and some female fertility traits such as 56-d nonreturn rate in cows (NRRC), calving to first service (CTFS), and first service to conception (FSTC); b) to assess the influence of including milk production as a correlated trait on the genetic evaluation of these traits in Canadian Holsteins; and c) to determine if using heifer nonreturn rate (NRRH) had a similar effect as using milk production on cow NRRC evaluation. The data included fertility and production records of first-parity Holstein cows. Genetic parameters were estimated using uni- and bivariate analyses in which milk production at around 90 DIM (TD90M) was included as a correlated trait to NRRC, CTFS, and FTSC. A bivariate analysis was also carried out in which NRRH was included as a correlated trait to NRRC. The models were compared by genetic trend (NRRC, CTFS, and FSTC) and cross-validation and predictability (NRRC). The heritability estimates for NRRC from the uni- and bivariate analyses were 0.017 and 0.020, respectively. The corresponding figures for CTFS were 0.07 and 0.08 and for FSTC were 0.049 and 0.05. The genetic trends for NRRC of the 2 models (NRRC+TD90M and NRRC+NRRH) gave very similar results. However, when milk production was included in the genetic evaluation of CTFS and FSTC, the genetic trends of the 2 fertility traits were higher compared with the univariate analysis. In NRRC evaluation by cross-validation and predictability, the bivariate analyses were more consistent and gave a better predictability than the univariate analysis. However, there was no major difference between the 2 models. Consequently, it might be worth including milk production or heifer fertility as correlated traits in the genetic evaluation of female fertility traits.

Analysis of the relationship between workability traits and functional longevity in Canadian dairy breeds

The aim of this study was to assess the effect of workability traits like milking speed and temperament on functional longevity of Canadian dairy cattle using a Weibull proportional hazards model. First-lactation data consisted of the following: 1,728,289 and 2,426,123 Holstein cows for milking temperament and milking speed, respectively, from 18,401 herds and sired by 8,248 sires; 39,618 and 60,121 Jersey cows for milking temperament and milking speed, respectively, from 1,845 herds and sired by 2,413 sires; and 54,391 and 94,847 Ayrshire cows for milking temperament and milking speed, respectively, from 1,316 herds and sired by 2,779 sires. Functional longevity was defined as the number of days from the first calving to culling, death, or censoring adjusted for production. Milking temperament and milking speed were recorded on a 1- to 5-point scale from very nervous to very calm and from very slow to very fast, respectively. The statistical model included the effects of stage of lactation; season of production; the annual change in herd size; type of milk recording supervision; age at first calving; effects of milk, fat, and protein yields calculated as within herd-year-parity deviations; herd-year-season of calving; sire; and milking temperament or milking speed class. The relative culling rate was calculated for animals in each milking temperament or milking speed class after accounting for the above-mentioned effects. The study showed that there was a statistically significant association between workability traits and functional longevity. Very nervous cows were 26, 23, and 46% more likely to be culled than very calm cows in Holstein, Ayrshire, and Jersey breeds, respectively. Similarly, very slow milkers were 36, 33, and 28% more likely to be culled than average milkers in Holstein, Ayrshire, and Jersey breeds, respectively. Additionally, very fast milkers were 11, 13, and 15% more likely to be culled than average milkers in Holstein, Ayrshire, and Jersey breeds, respectively. Producers might want to avoid consequences associated with the fast milkers such as udder health problems.

Estimation of genetic parameters for measures of calf survival in a population of Holstein heifer calves from a heifer-raising facility in New York State

The objectives of this study were to estimate the genetic parameters of survival to weaning and survival to exit for a population of Holstein calves from New York State, as well as to associate the estimated breeding values determined in the current study with traits from ongoing genetic evaluations used in Canada and the United States. Data were recorded for 7,372 heifer calves at a commercial rearing facility in New York State from arrival at 1 to 7 d of age for the duration of stay at the facility (on average, heifers departed the facility 1 mo before calving). Performance and disease up to weaning and mortality before and after weaning were recorded. Analyzed data were limited to daughters of sires with at least 10 calves originating from farms that had sent a minimum of 5 calves to be raised at the facility. As such, calves from 264 sires and 36 herds were studied using 2 statistical methods. The first method, calf survival, used a Weibull proportional hazards model, with survival defined as age at culling, death, or censoring. The second method, a 2-trait sire model, included survival from arrival to weaning (SUV1) and survival from weaning to exit (SUV2). Both models included fixed effects of arrival weight, serum total protein, weaning weight, season and year of birth, and calving ease score. Herd and sire were included as random effects. Significant associations among all fixed effects and calf survival were observed. In general, very light or heavy weight at arrival, low total protein, low weaning weight, and difficult birth increased risk of mortality for calves. The heritability of survival from the first method was 0.063. The heritabilities from the linear model were 0.001 for SUV1 and 0.036 for SUV2. The genetic correlation between SUV1 and SUV2 was 0.58. Genetic variance was close to zero for survival of calves to weaning, but was greater for survival after weaning through the growing period. Breeding values were estimated for SUV1 and SUV2 and correlated with routinely evaluated traits from Canadian and US genetic evaluations. Significant associations between genetic evaluations for survival traits and routinely evaluated traits in Canada and the United States were found, in particular with conformation body traits, somatic cell score, fertility, and longevity.

Short communication: Genetic parameters of production traits in Chinese Holsteins using a random regression test-day model

The objective of this study was to estimate genetic parameters of production traits in the first 3 parities in Chinese Holsteins. Data were a random sample of complete herds (109,005 test-day records of 9,706 cows from 54 herds) extracted from the original data set, which included 362,304 test-day records of 30,942 Holstein cows from 105 herds. A test-day animal model with multiple-trait random regression and the Gibbs sampling method were used for parameter estimation. Regression curves were modeled using Legendre polynomials of order 4. The multiple-trait analysis included milk, fat, and protein yield, and somatic cell score (SCS). Average daily heritabilities ranged between 0.222 and 0.346 for the yield traits and between 0.092 and 0.187 for SCS. Heritabilities were higher in the third lactation for all traits. Within-parity genetic correlations were very high among the yield traits (>0.806) and were close to zero between SCS and yield traits, especially for first-parity cows. Results were similar to previous literature estimates from studies that used the same model as applied to this study. The estimates found in this study will be used to perform breeding value estimation for national genetic evaluations in Chinese Holsteins.