A. Yu. Kanat’eva

A hydrocarbon-oxidizing acidophilic thermotolerant bacterial association from sulfur blocks

A stable bacterial association isolated from a sulfur block sample of the Astrakhan gas processing complex was able to utilize n-alkanes as the sole carbon and energy source at low pH. Hydrocarbon-dependent growth occurred at pH 1.6–5.5 (optimum at pH 2.5) and 20–50°C (optimum at 30–35°C). Analysis of the 16S rRNA gene fragments isolated from the total DNA of the enrichment by PCR-DGGE revealed the nucleotide sequences most closely related to extreme acidophilic chemolithotrophs Acidithiobacillus thiooxidans and Sulfobacillus sp. (98–99% similarity) and the sequences exhibiting high similarity to those of slowly growing actinobacteria Mycobacterium europaeum and M. parascrofulaceum (98%). Capacity of any of these organisms for hydrocarbon oxidation has not been reported previously. The taxonomic position of the 16S rRNA gene fragments from the enrichment culture suggests that this bacterial association is a unique microbial community, in which development of acidophilic hydrocarbon-oxidizing bacteria is mediated by a localized pH decrease in the sulfur blocks resulting from elemental sulfur oxidation due to massive development of chemolithotrophic sulfur-oxidizing bacteria.

Hydrocarbon-oxidizing potential and the genes for n-alkane biodegradation in a new acidophilic mycobacterial association from sulfur blocks

The capacity of AGS10, a new aerobic acidophilic (growing within the pH range from 1.3 to 4.5 with the optimum at 2.0–2.5) bacterial association from sulfur blocks of the Astrakhan gas-processing complex (AGC), for oxidation of hydrocarbons of various chemical structure was investigated. A broad spectrum of normal (C10-C21) and iso-alkanes, toluene, naphthalene, and phenanthrene, as well as isoprenoids resistant to microbial degradation, pristane and phytane (components of paraffin oil), and 2,2,4,4,6,8,8,-heptamethylnonane, a branched hydrocarbon, were biodegraded under acidic conditions. Microbiological investigation revealed the dominance of mycobacteria in the AGS10 association, which was confirmed by analysis of the 16S rRNA gene clone library. In the phylogenetic tree, the 16S rRNA sequences formed a branch within the cluster of slow-growing mycobacteria, with 98% homology to the closest species Mycobacterium florentinum. Genomic DNA of AGS10 culture grown on C14-C17n-alkanes at pH 2.5 was found to contain the genes of two hydroxylase families, alkB and Cyp153, indicating their combined involvement in hydrocarbon biodegradation. The high hydrocarbon-oxidizing potential of the AGS10 bacterial association indicated that further search for the genes responsible for degradation of various hydrocarbons in acidophilic mycobacteria could be promising.

Conformational transitions in ultrahigh-molecular-mass polymers and their manifestation in chromatography on monolithic columns

For a monolithic capillary column based on polydivinylbenzene, a change in the elution profile of polystyrene standards with variation in the eluent-flow rate is studied. It is shown that, for polymers with molecular masses up to 3 × 106, the elution profile does not depend on the flow rate. For higher molecular mass polymers at low flow rates, there is a single almost Gaussian peak that splits into two peaks that move to different sides from the initial peak with an increase in the flow rate. A peak with a smaller retention time (peak I) rapidly attains the limiting elution time, and later on, its retention is independent of the eluent-flow rate. In contrast, the retention time of the other peak (peak II) continuously increases with an increase in the flow rate of the mobile phase, so that, at high flow rates, this peak is retained for a longer time than the low-molecular-mass marker. The intensity of peak I decreases, while the intensity of peak II increases with an increase in the eluent-flow rate; the ratio of their intensities tends toward a certain limiting value (≤1). The observed profile of elution of ultrahigh-molecular-mass polymers assumes the presence of a dynamic equilibrium similar to that existing in the case of first-order reversible reactions. For the assumed equilibrium, the rate constants of direct and back reactions are determined. It is found that these constants are close to the inverse maximum relaxation time of a polymer molecule. The character of the transformations of the polymer molecule in the chromatographic column is discussed.

Divinylbenzene-based monolithic capillary columns in capillary liquid chromatography

The effect of the conditions of synthesis of divinylbenzene-based monolithic capillary columns on their chromatographic characteristics was studied. It was demonstrated that the porosity and permeability of the column change significantly even at small deviations from the optimum conditions of polymerization of the monolith in the column. By contrast, the minimum value of HETP proved to be only slightly sensitive to the conditions of synthesis, ranging within ∼10–20 μm. The conditions of polymerization of the monolith were found to produce more pronounced effect on the slope of the right branch of the van Deemter curve (parameter C), with the flattest curve being observed for columns prepared under optimum conditions. The minimum value of HETP for polymer monolithic capillary columns was found to be similar to that for silica gel monolithic capillary columns, but the latter are characterized by C values approximately an order of magnitude lower.

Separating ultra-high molecular weight polymers on monolithic capillary columns

The chromatographic behavior of a polystyrene sample with a molecular weight of 20 × 106 Da and narrow molecular weight distribution is studied on a monolithic capillary column based on polydivinylbenzene. It is found that either one symmetrical peak or two peaks that cannot be completely separated over the range of flow rates for the mobile phase can be observed in the chromatogram, depending on the flow rate of the mobile phase. The observed changes in the elution profile of polystyrene standards are attributed to the presence of dynamic equilibrium in the system (reaction chromatography), for which the apparent constants of forward and reverse reactions and the apparent equilibrium constant are obtained. It is noted that the apparent constant of direct reaction increases linearly with a rising eluent flow rate, while saturation and even a drop in the apparent rate constant of the reverse reaction is observed when the flow rate of the eluent rises. It is suggested that the observed changes are related to conformational transitions in the macromolecules of polystyrene, but a detailed explanation of the observed effect requires further investigation.

Identification of oxygen-containing compounds in gasoline by two-dimensional gas chromatography with mass spectrometric detection

A method for identifying oxygen-containing compounds by two-dimensional gas chromatography (GC) with mass spectrometric detection in the second dimension is proposed. The method is shown to facilitate the unambiguous identification of compounds, to exclude a false positive identification of target compounds, and to avoid significant errors in the simultaneous identification of a large number of components.

The synthesis and study of monolithic capillary columns for ion chromatography of anions

The physicochemical and chromatographic parameters of ion-exchange monolithic matrices and capillary columns on their basis were measured. A method was suggested for producing high-efficiency ionexchange monolithic capillary columns with the monolith structure optimized for efficient selective separation of anions in ion chromatography. The influence of the conditions of synthesis of monoliths on their porosity, permeability, the structure of the monolith layer, and the impedance of monolithic columns on their basis was investigated.

Chromatographic determination of the diffusion coefficients of light hydrocarbons in polymers

Gas-chromatographic determination of the diffusion coefficients that allows for the compressibility of the mobile phase has been suggested. The diffusion coefficients were determined for light hydrocarbons С1–С4 in four polymers with a high free volume, which are candidates for use as gas-separating membranes. The diffusion coefficients calculated from chromatographic data were shown to be one or two orders of magnitude smaller than the values obtained by the membrane method. This may be due to the presence of an additional flow through the membrane caused by the pressure gradient across the membrane in membrane methods.

Aerobic degradation of adamantanes at highly acidic conditions

Biodegradation of alkyl-substituted adamantane derivatives (1-methyl, 1,3-dimethyl-, and 1,3,5-trimethyladamantane) by slow-growing bacteria Mycobacterium AGS10 was studied. The process was carried out under extremely acidic conditions (pH 2.5). Bacterial strain AGS10 was able to utilize these alicyclic hydrocarbons with a high degree of condensation and diamond-like structure, which are usually resistant to microbial transformation. Efficiency of alkyaldamantane biodegradation by the cells growing with these substrates as the sole carbon and energy sources was affected significantly by their aggregate state, which depended on molecular structure. Compared to the solid 1-methyladamantane, 1,3-dimethyladamantane, which is liquid under normal conditions, was a preferable substrate. Adamantanes in the gas condensate were generally more resistant to bacterial degradation than such markers as normal and isoprenoid alkanes. Moreover, biodegradation had no significant effect on relative distribution of the tested С11–С13 alkyladamantanes.

Hydrocarbon biodegradation and surfactant production by acidophilic mycobacteria

Production of biosurfactants by acidophilic mycobacteria was demonstrated in the course of aerobic degradation of hydrocarbons (n-tridecane, n-tricosane, n-hexacosane, model mixtures of С14–С17, С12‒С19, and С9–С21n-alkanes, 2,2,4,4,6,8,8-heptamethylnonane, squalane, and butylcyclohexane) and their complex mixtures (hydrocarbon gas condensate, kerosene, black oil, and paraffin oil) under extremely acidic conditions (pH 2.5). When grown on hydrocarbons, the studied bacterial culture AGS10 caused a decrease in the surface and interfacial tension of the solutions (to the lowest observed values of 26.0 and 1.3 mN/m, respectively) compared to the bacteria-free control. The rheological characteristics of the culture changed only when mycobacteria were grown on hydrocarbons. Neither the medium nor the cell-free culture liquid had the surfactant activity, which indicated formation of an endotype biosurfactant by mycobacteria. Biodegradation of n-alkanes was accompanied by an increase in cell numbers, surfactant production, and changes in the hydrophobicity of bacterial cell surface and in associated phenomena of adsorption and desorption to the hydrocarbon phase. Research on AGS10 culture liquids containing the raw biosurfactant demonstrated the preservation of its activity within a broad range of pH, temperature, and salinity.