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Dive into the research topics where Aamer Chughtai is active.

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Featured researches published by Aamer Chughtai.


International Journal of Radiation Oncology Biology Physics | 2011

Development and Validation of a Heart Atlas to Study Cardiac Exposure to Radiation Following Treatment for Breast Cancer

Mary Feng; Jean M. Moran; Todd M. Koelling; Aamer Chughtai; June L Chan; Laura Freedman; James A. Hayman; Reshma Jagsi; Shruti Jolly; Janice Larouere; Julie Soriano; Robin Marsh; Lori J. Pierce

PURPOSE Cardiac toxicity is an important sequela of breast radiotherapy. However, the relationship between dose to cardiac structures and subsequent toxicity has not been well defined, partially due to variations in substructure delineation, which can lead to inconsistent dose reporting and the failure to detect potential correlations. Here we have developed a heart atlas and evaluated its effect on contour accuracy and concordance. METHODS AND MATERIALS A detailed cardiac computed tomography scan atlas was developed jointly by cardiology, cardiac radiology, and radiation oncology. Seven radiation oncologists were recruited to delineate the whole heart, left main and left anterior descending interventricular branches, and right coronary arteries on four cases before and after studying the atlas. Contour accuracy was assessed by percent overlap with gold standard atlas volumes. The concordance index was also calculated. Standard radiation fields were applied. Doses to observer-contoured cardiac structures were calculated and compared with gold standard contour doses. Pre- and post-atlas values were analyzed using a paired t test. RESULTS The cardiac atlas significantly improved contour accuracy and concordance. Percent overlap and concordance index of observer-contoured cardiac and gold standard volumes were 2.3-fold improved for all structures (p < 0.002). After application of the atlas, reported mean doses to the whole heart, left main artery, left anterior descending interventricular branch, and right coronary artery were within 0.1, 0.9, 2.6, and 0.6 Gy, respectively, of gold standard doses. CONCLUSIONS This validated University of Michigan cardiac atlas may serve as a useful tool in future studies assessing cardiac toxicity and in clinical trials which include dose volume constraints to the heart.


European Respiratory Journal | 2011

Pulmonary function measures predict mortality differently in IPF versus combined pulmonary fibrosis and emphysema

Shelley L. Schmidt; Anoop M. Nambiar; Nabihah Tayob; Baskaran Sundaram; MeiLan K. Han; Barry H. Gross; Ella A. Kazerooni; Aamer Chughtai; Amir Lagstein; Jeffrey L. Myers; Susan Murray; Galen B. Toews; Fernando J. Martinez; Kevin R. Flaherty

The composite physiologic index (CPI) was derived to represent the extent of fibrosis on high-resolution computed tomography (HRCT), adjusting for emphysema in patients with idiopathic pulmonary fibrosis (IPF). We hypothesised that longitudinal change in CPI would better predict mortality than forced expiratory volume in 1 s (FEV1), forced vital capacity (FVC) or diffusing capacity of the lung for carbon monoxide (DL,CO) in all patients with IPF, and especially in those with combined pulmonary fibrosis and emphysema (CPFE). Cox proportional hazard models were performed on pulmonary function data from IPF patients at baseline (n = 321), 6 months (n = 211) and 12 months (n = 144). Presence of CPFE was determined by HRCT. A five-point increase in CPI over 12 months predicted subsequent mortality (HR 2.1, p = 0.004). At 12 months, a 10% relative decline in FVC, a 15% relative decline in DL,CO or an absolute increase in CPI of five points all discriminated median survival by 2.1 to 2.2 yrs versus patients with lesser change. Half our cohort had CPFE. In patients with moderate/severe emphysema, only a 10% decline in FEV1 predicted mortality (HR 3.7, p = 0.046). In IPF, a five-point increase in CPI over 12 months predicts mortality similarly to relative declines of 10% in FVC or 15% in DL,CO. For CPFE patients, change in FEV1 was the best predictor of mortality.


Radiographics | 2009

Multidetector CT of thoracic aortic aneurysms

Prachi P. Agarwal; Aamer Chughtai; Frederick R. K. Matzinger; Ella A. Kazerooni

Thoracic aortic aneurysms (TAAs) can be broadly divided into true aneurysms and false aneurysms (pseudoaneurysms). True aneurysms contain all three layers of the aortic wall (intima, media, and adventitia), whereas false aneurysms have fewer than three layers and are contained by the adventitia or periadventitial tissues. Multidetector computed tomographic (CT) angiography allows the comprehensive evaluation of TAAs in terms of morphologic features and extent, presence of thrombus, relationship to adjacent structures and branches, and signs of impending or acute rupture, and is routinely used in this setting. Knowledge of the causes, significance, imaging appearances, and potential complications of both common and uncommon aortic aneurysms, as well as of the normal postoperative appearance of the thoracic aorta, is essential for prompt and accurate diagnosis. Supplemental material available at http://radiographics.rsnajnls.org/cgi/content/full/29/2/537/DC1.


American Journal of Roentgenology | 2009

Evaluation of Mechanical Heart Valve Size and Function With ECG-Gated 64-MDCT

Troy LaBounty; Prachi P. Agarwal; Aamer Chughtai; David S. Bach; Eric Wizauer; Ella A. Kazerooni

OBJECTIVE The purpose of our study was to determine whether CT can accurately evaluate mechanical heart valve size and function. MATERIALS AND METHODS Sixty-two patients with mechanical valves (37 single-disc, 27 bileaflet; 59 aortic, 5 mitral) were evaluated with ECG-gated 64-MDCT and transthoracic echocardiography; a subset of 10 patients underwent cinefluoroscopy. Two readers independently interpreted each study. RESULTS The mean age of the patients was 46.4 +/- 14.4 years; 50 were men and 12 were women. There was excellent correlation, and differences between CT readers were absent to small in measuring the opening angle (r = 0.96, p < 0.001; 76.7 +/- 9.0 degrees vs 76.8 +/- 9.6 degrees , p = 0.73), annulus diameter (r = 0.96, p < 0.001; 25.9 +/- 3.3 vs 25.9 +/- 3.2 mm, p = 0.62), and geometric orifice area (r = 0.98, p < 0.001; 3.8 +/- 0.9 vs 3.6 +/- 0.8 cm(2), p < 0.001). There was strong correlation without difference in opening angle between CT and cinefluoroscopy (r = 0.77, p < 0.001; 79.2 degrees +/- 9.8 degrees vs 77.2 degrees +/- 15.5 degrees , p = 0.45). Compared with manufacturer specifications, CT reported opening angles that were smaller for single-disc valves (n = 36, 67.4 degrees +/- 5.7 degrees vs 75 degrees , p < 0.001) and similar for bileaflet valves (n = 42 for 21 valves, 83.8 degrees +/- 3.9 degrees vs 85 degrees , p = 0.05), valves, with small underestimation with CT versus specifications in annulus diameter (n = 41; r = 0.75, p < 0.001; 26.4 +/- 3.0 vs 27.5 +/- 3.3 mm, p = 0.003), and geometric orifice area (n = 35; r = 0.90, p < 0.001; 3.7 +/- 0.7 vs 3.8 +/- 0.8 cm(2), p = 0.04). Each disc closed fully on CT; none had more than mild regurgitation on echocardiography. CONCLUSION CT can measure the size and function of mechanical valves with high interobserver agreement and results similar to specifications. The opening angle with CT strongly correlates with cinefluoroscopy. CT is promising for the assessment of mechanical valves.


Physics in Medicine and Biology | 2008

Effect of CT scanning parameters on volumetric measurements of pulmonary nodules by 3D active contour segmentation: a phantom study

Ted W. Way; Heang Ping Chan; Mitchell M. Goodsitt; Berkman Sahiner; Lubomir M. Hadjiiski; Chuan Zhou; Aamer Chughtai

The purpose of this study is to investigate the effects of CT scanning and reconstruction parameters on automated segmentation and volumetric measurements of nodules in CT images. Phantom nodules of known sizes were used so that segmentation accuracy could be quantified in comparison to ground-truth volumes. Spherical nodules having 4.8, 9.5 and 16 mm diameters and 50 and 100 mg cc(-1) calcium contents were embedded in lung-tissue-simulating foam which was inserted in the thoracic cavity of a chest section phantom. CT scans of the phantom were acquired with a 16-slice scanner at various tube currents, pitches, fields-of-view and slice thicknesses. Scans were also taken using identical techniques either within the same day or five months apart for study of reproducibility. The phantom nodules were segmented with a three-dimensional active contour (3DAC) model that we previously developed for use on patient nodules. The percentage volume errors relative to the ground-truth volumes were estimated under the various imaging conditions. There was no statistically significant difference in volume error for repeated CT scans or scans taken with techniques where only pitch, field of view, or tube current (mA) were changed. However, the slice thickness significantly (p < 0.05) affected the volume error. Therefore, to evaluate nodule growth, consistent imaging conditions and high resolution should be used for acquisition of the serial CT scans, especially for smaller nodules. Understanding the effects of scanning and reconstruction parameters on volume measurements by 3DAC allows better interpretation of data and assessment of growth. Tracking nodule growth with computerized segmentation methods would reduce inter- and intraobserver variabilities.


Computerized Medical Imaging and Graphics | 2012

Automated coronary artery tree extraction in coronary CT angiography using a multiscale enhancement and dynamic balloon tracking (MSCAR-DBT) method

Chuan Zhou; Heang Ping Chan; Aamer Chughtai; Smita Patel; Lubomir M. Hadjiiski; Jun Wei; Ella A. Kazerooni

RATIONAL AND OBJECTIVES To evaluate our prototype method for segmentation and tracking of the coronary arterial tree, which is the foundation for a computer-aided detection (CADe) system to be developed to assist radiologists in detecting non-calcified plaques in coronary CT angiography (cCTA) scans. MATERIALS AND METHODS The heart region was first extracted by a morphological operation and an adaptive thresholding method based on expectation-maximization (EM) estimation. The vascular structures within the heart region were enhanced and segmented using a multiscale coronary response (MSCAR) method that combined 3D multiscale filtering, analysis of the eigenvalues of Hessian matrices and EM estimation segmentation. After the segmentation of vascular structures, the coronary arteries were tracked by a 3D dynamic balloon tracking (DBT) method. The DBT method started at two manually identified seed points located at the origins of the left and right coronary arteries (LCA and RCA) for extraction of the arterial trees. The coronary arterial trees of a data set containing 20 ECG-gated contrast-enhanced cCTA scans were extracted by our MSCAR-DBT method and a clinical GE Advantage workstation. Two experienced thoracic radiologists visually examined the coronary arteries on the original cCTA scans and the rendered volume of segmented vessels to count the untracked false-negative (FN) segments and false positives (FPs) for both methods. RESULTS For the visible coronary arterial segments in the 20 cases, the radiologists identified that 25 segments were missed by our MSCAR-DBT method, ranging from 0 to 5 FN segments in individual cases, and that 55 artery segments were missed by the GE software, ranging from 0 to 7 FN segments in individual cases. 19 and 15 FPs were identified in our and the GE coronary trees, ranging from 0 to 4 FPs for both methods in individual cases, respectively. CONCLUSION The preliminary study demonstrates the feasibility of our MSCAR-DBT method for segmentation and tracking coronary artery trees. The results indicated that both our method and GE software can extract coronary artery trees reasonably well and the performance of our method is superior to that of GE software in this small data set. Further studies are underway to develop methods for improvement of the segmentation and tracking accuracy.


Journal of Cardiovascular Computed Tomography | 2009

Hemodynamic and functional assessment of mechanical aortic valves using combined echocardiography and multidetector computed tomography

Troy LaBounty; Prachi P. Agarwal; Aamer Chughtai; Ella A. Kazerooni; Eric Wizauer; David S. Bach

BACKGROUND Limitations are found in the ability of transthoracic echocardiography to evaluate mechanical aortic valve replacements (AVR). We evaluated the ability of combined echocardiography and computed tomography (CT) to enhance the hemodynamic and functional evaluation of AVR. METHODS We performed a retrospective evaluation of 41 consecutive patients with AVR (27 bileaflet, 14 single disc) and both transthoracic echocardiography and 64-detector electrocardiographic-gated CT. Each study was interpreted by 2 independent, blinded readers. The effective orifice area was compared with the corrected energy-loss coefficient area and the geometric orifice area. Patients with an elevated mean pressure gradient (>15 mm Hg) were assessed for potential abnormal findings, including patient-prosthesis mismatch, elevated cardiac index, valve dysfunction, significant regurgitation, or pressure recovery effect. RESULTS Significant differences (P<0.05) and moderate-to-high correlations (r=0.55-0.98) were observed between the effective orifice area (2.2+/-0.8 cm(2)), corrected energy-loss coefficient area (3.0+/-1.5 cm(2)), and geometric orifice area (3.6+/-0.9 cm(2)). At least one abnormality was observed in 7 of 25 patients with normal gradients and in 14 of 16 patients with elevated gradients (P<0.001). In 16 patients with elevated mean pressure gradient, a potential cause could be determined in 4 with echocardiography alone and in 14 patients with combined echocardiography and CT (P=0.001). CONCLUSION CT aids in the interrogation of prosthetic valve function, enhancing evaluation for patient prosthesis mismatch, and correction for pressure recovery by the corrected energy-loss coefficient. CT is additive to the assessment of mechanical AVR with transthoracic echocardiography, and the combination permits a more complete assessment of both AVR function and hemodynamics.


Medical Physics | 2013

Automated iterative neutrosophic lung segmentation for image analysis in thoracic computed tomography

Yanhui Guo; Chuan Zhou; Heang Ping Chan; Aamer Chughtai; Jun Wei; Lubomir M. Hadjiiski; Ella A. Kazerooni

PURPOSE Lung segmentation is a fundamental step in many image analysis applications for lung diseases and abnormalities in thoracic computed tomography (CT). The authors have previously developed a lung segmentation method based on expectation-maximization (EM) analysis and morphological operations (EMM) for our computer-aided detection (CAD) system for pulmonary embolism (PE) in CT pulmonary angiography (CTPA). However, due to the large variations in pathology that may be present in thoracic CT images, it is difficult to extract the lung regions accurately, especially when the lung parenchyma contains extensive lung diseases. The purpose of this study is to develop a new method that can provide accurate lung segmentation, including those affected by lung diseases. METHODS An iterative neutrosophic lung segmentation (INLS) method was developed to improve the EMM segmentation utilizing the anatomic features of the ribs and lungs. The initial lung regions (ILRs) were extracted using our previously developed EMM method, in which the ribs were extracted using 3D hierarchical EM segmentation and the ribcage was constructed using morphological operations. Based on the anatomic features of ribs and lungs, the initial EMM segmentation was refined using INLS to obtain the final lung regions. In the INLS method, the anatomic features were mapped into a neutrosophic domain, and the neutrosophic operation was performed iteratively to refine the ILRs. With IRB approval, 5 and 58 CTPA scans were collected retrospectively and used as training and test sets, of which 2 and 34 cases had lung diseases, respectively. The lung regions manually outlined by an experienced thoracic radiologist were used as reference standard for performance evaluation of the automated lung segmentation. The percentage overlap area (POA), the Hausdorff distance (Hdist), and the average distance (AvgDist) of the lung boundaries relative to the reference standard were used as performance metrics. RESULTS The proposed method achieved larger POAs and smaller distance errors than the EMM method. For the 58 test cases, the average POA, Hdist, and AvgDist were improved from 85.4±18.4%, 22.6±29.4 mm, and 3.5±5.4 mm using EMM to 91.2±6.7%, 16.0±11.3 mm, and 2.5±1.0 mm using INLS, respectively. The improvements were statistically significant (p<0.05). To evaluate the accuracy of the INLS method in the identification of the lung boundaries affected by lung diseases, the authors separately analyzed the performance of the proposed method on the cases with versus without the lung diseases. The results showed that the cases without lung diseases were segmented more accurately than the cases with lung diseases by both the EMM and the INLS methods, but the INLS method achieved better performance than the EMM method in both cases. CONCLUSIONS The new INLS method utilizing the anatomic features of the rib and lung significantly improved the accuracy of lung segmentation, especially for the cases affected by lung diseases. Improvement in lung segmentation will facilitate many image analysis tasks and CAD applications for lung diseases and abnormalities in thoracic CT, including automated PE detection.


Journal of Thoracic Imaging | 2010

Multidetector high-resolution computed tomography of the lungs: Protocols and applications

Baskaran Sundaram; Aamer Chughtai; Ella A. Kazerooni

Advances in computed tomography (CT) scanner technology have made isotropic volumetric, multiplanar high-resolution lung imaging possible in a single breath-hold, a significant advance over the incremental high-resolution CT (HRCT) technique in which noncontiguous images sampled the lung, but lacked anatomic continuity. HRCT of the lungs is an established imaging technique for the diagnosis and management of interstitial lung disease, emphysema, and small airway disease, providing a noninvasive detailed evaluation of the lung parenchyma, and providing information about the lungs as a whole and focally. In addition to having a high degree of specificity for diagnosing conditions such as emphysema, sarcoidosis, usual interstitial pneumonitis, Langerhans cell histiocytosis, and small airway disease, there is a growing body of medical evidence to support the use of HRCT findings or diagnosis to predict patient prognosis. In this article, we review the technique, advantages, and clinical applications of the current HRCT technique.


Journal of Computer Assisted Tomography | 2005

Cardiac pseudosarcomatous fibromyxoid tumor: a review of the literature.

Aamer Chughtai; Paul Cronin; Aine Marie Kelly; David R. Lucas; Francis D. Pagani; Ella A. Kazerooni

A cardiac pseudosarcomatous fibromyxoid tumor (PFT) is described in a previously healthy 35-year-old man, together with a review of the literature. Pseudosarcomatous fibromyxoid tumor is within the spectrum of inflammatory (myofibroblastic) pseudotumors. It has previously been described predominantly within the genitourinary tract and respiratory tract. Inflammatory pseudotumor is rare as a cardiac tumor, and cardiac PFT is not previously reported. No recurrence or metastatic disease has been reported after resection of PFTs elsewhere in the body, and this tumor seems to have a benign clinical course.

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Chuan Zhou

University of Michigan

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Jun Wei

University of Michigan

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Smita Patel

University of Michigan

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Berkman Sahiner

Food and Drug Administration

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