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Dive into the research topics where Aamir R. Zuberi is active.

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Featured researches published by Aamir R. Zuberi.


Immunity | 1997

Minors held by majors: the H13 minor histocompatibility locus defined as a peptide/MHC class I complex.

Lisa Mendoza; Pedro Paz; Aamir R. Zuberi; Greg Christianson; Derry C. Roopenian; Nilabh Shastri

The products of minor histocompatibility (H) loci are serious barriers to tissue transplantation even among major histocompatibility complex (MHC) identical individuals, frequently causing chronic graft rejection and graft versus host disease. Over 50 minor H loci map to mouse autosomal chromosomes but none are known at the molecular level. By expression cloning, we identified the H13 locus, a classical minor H locus first detected 30 years ago by the trait of graft rejection. The H13a allele is located on chromosome 2 and encodes a novel protein that yields the rare naturally processed nonapeptide SSVVGVWYL (SVL9) for presentation by the Db MHC class I molecule. The SVL9 peptide binds Db MHC despite the absence of the consensus binding motif, and a conservative methyl group substitution (Valine 4 <--> Isoleucine) explains why reciprocal T cell responses are elicited in H13a and H13b congenic strains.


Mammalian Genome | 1991

Mouse chromosome 2

Linda D. Siracusa; Catherine M. Abbott; Judith L. Morgan; Aamir R. Zuberi; Daniel Pomp; Josephine Peters

mKimmel Cancer Center, Jefferson Medical College, Department of Microbiology and Immunology, 233 South 10th Street, Philadelphia, Pennsylvania 19107-5541, USA 2Human Genetics Unit, Molecular Medicine Center, The University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh EH4 2XU, UK 3The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA 4Departrnent of Animal Science, University of Nebraska-Lincoln, Lincoln, Nebraska 68583-0908, USA SMRC Mammalian Genetics Unit, Harwell, Didcot Oxon OX 11 ORD, UK


Nature Genetics | 2002

Microtubule-associated protein 1A is a modifier of tubby hearing (moth1).

Akihiro Ikeda; Qing Yin Zheng; Aamir R. Zuberi; Kenneth R. Johnson; Jürgen K. Naggert; Patsy M. Nishina

Once a mutation in the gene tub was identified as the cause of obesity, retinal degeneration and hearing loss in tubby mice, it became increasingly evident that the members of the tub gene family (tulps) influence maintenance and function of the neuronal cell lineage. Suggested molecular functions of tubby-like proteins include roles in vesicular trafficking, mediation of insulin signaling and gene transcription. The mechanisms through which tub functions in neurons, however, have yet to be elucidated. Here we report the positional cloning of an auditory quantitative trait locus (QTL), the modifier of tubby hearing 1 gene (moth1), whose wildtype alleles from strains AKR/J, CAST/Ei and 129P2/OlaHsd protect tubby mice from hearing loss. Through a transgenic rescue experiment, we verified that sequence polymorphisms in the neuron-specific microtubule-associated protein 1a gene (Mtap1a) observed in the susceptible strain C57BL/6J (B6) are crucial for the hearing-loss phenotype. We also show that these polymorphisms change the binding efficiency of MTAP1A to postsynaptic density molecule 95 (PSD95), a core component in the cytoarchitecture of synapses. This indicates that at least some of the observed polymorphisms are functionally important and that the hearing loss in C57BL/6J-tub/tub (B6-tub/tub) mice may be caused by impaired protein interactions involving MTAP1A. We therefore propose that tub may be associated with synaptic function in neuronal cells.


Immunity | 1998

Positional cloning and molecular characterization of an immunodominant cytotoxic determinant of the mouse H3 minor histocompatibility complex.

Aamir R. Zuberi; Gregory J. Christianson; Lisa Mendoza; Nilabh Shastri; Derry C. Roopenian

Immune responses to minor histocompatibility antigens are poorly understood and present substantial barriers to successful solid tissue and bone marrow transplantation among MHC-matched individuals. We exploited a unique positional cloning approach relying on the potent negative selection capability of cytotoxic T cells to identify the H3a gene responsible for immunodominant H2-Db-restricted determinants of the classically defined mouse autosomal H3 complex. The allelic basis for reciprocal H3a antigens is two amino acid changes within a single nonamer H2-Db-binding peptide. The H3a gene, now called Zfp106, encodes a 1888-amino acid protein with three zinc fingers and a beta-transducin domain consistent with DNA/protein binding. A region of ZFP106 is identical to a 600-amino acid sequence implicated in the insulin receptor signaling pathway.


Immunogenetics | 1993

The genetic origin of minor histocompatibility antigens.

Derry C. Roopenian; Greg Christianson; Allan Peter Davis; Aamir R. Zuberi; Larry E. Mobraaten

The purpose of this study was to elucidate the genetic origin of minor histocompatibility (H) antigens. Toward this end common inbred mouse strains, distinct subspecies, and species of the subgenus Mus were examined for expression of various minor H antigens. These antigens were encoded by the classical minor H loci H-3 and H-4 or by newly identified minor H antigens detected as a consequence of mutation. Both minor H antigens that stimulate MHC class I-restricted cytotoxic T cells (Tc) and antigens that stimulate MHC class II-restricted helper T cells (Th) were monitored. The results suggested that strains of distinct ancestry commonly express identical or cross-reactive antigens. Moreover, a correlation between the lack of expression of minor H antigens and ancestral heritage was observed. To address whether the antigens found on unrelated strains were allelic with the sensitizing minor H antigens or a consequence of antigen cross-reactivity, classical genetic segregation analysis was carried out. Even in distinct subspecies and species, the minor H antigens always mapped to the site of the appropriate minor H locus. Together the results suggest: 1 minor H antigen sequences are evolutionarily stable in that their pace of antigenic change is slow enough to predate subspeciation and speciation; 2 the minor H antigens originated in the inbred strains as a consequence of a rare polymorphism or loss mutation carried in a founder mouse stock that caused the mouse to percieve the wild-type protein as foreign; 3 there is a remarkable lack of antigenic cross-reactivity between the defined minor H antigens and other products.


Proceedings of the National Academy of Sciences of the United States of America | 2011

Hypothalamic mitochondrial dysfunction associated with anorexia in the anx/anx mouse

Charlotte Lindfors; Ida Nilsson; Pablo Miguel García-Rovés; Aamir R. Zuberi; Mohsen Karimi; Leah Rae Donahue; Derry C. Roopenian; Jan Mulder; Mathias Uhlén; Tomas J. Ekström; Muriel T. Davisson; Tomas Hökfelt; Martin Schalling; Jeanette E. Johansen

The anorectic anx/anx mouse exhibits disturbed feeding behavior and aberrances, including neurodegeneration, in peptidergic neurons in the appetite regulating hypothalamic arcuate nucleus. Poor feeding in infants, as well as neurodegeneration, are common phenotypes in human disorders caused by dysfunction of the mitochondrial oxidative phosphorylation system (OXPHOS). We therefore hypothesized that the anorexia and degenerative phenotypes in the anx/anx mouse could be related to defects in the OXPHOS. In this study, we found reduced efficiency of hypothalamic OXPHOS complex I assembly and activity in the anx/anx mouse. We also recorded signs of increased oxidative stress in anx/anx hypothalamus, possibly as an effect of the decreased hypothalamic levels of fully assembled complex I, that were demonstrated by native Western blots. Furthermore, the Ndufaf1 gene, encoding a complex I assembly factor, was genetically mapped to the anx interval and found to be down-regulated in anx/anx mice. These results suggest that the anorexia and hypothalamic neurodegeneration of the anx/anx mouse are associated with dysfunction of mitochondrial complex I.


Mammalian Genome | 2010

Increased physical activity cosegregates with higher intake of carbohydrate and total calories in a subcongenic mouse strain

K. Ganesh Kumar; Lisa M. DiCarlo; Julia Volaufova; Aamir R. Zuberi; Brenda K. Smith Richards

C57BL/6xa0J (B6) and CAST/EiJ (CAST), the inbred strain derived from M.musculus castaneus, differ in nutrient intake behaviors, including dietary fat and carbohydrate consumption in a two-diet-choice paradigm. Significant quantitative trait loci (QTLs) for carbohydrate (Mnic1) and total energy intake (Kcal2) are present between these strains on chromosome (Chr) 17. Here we report the refinement of the Chr 17 QTL in a subcongenic strain of the B6.CAST-D17Mit19-D17Mit91 congenic mice described previously. This new subcongenic strain possesses CAST Chr 17 donor alleles from 4.8 to 45.4xa0Mb on a B6 background. Similar to CAST, the subcongenic mice exhibit increased carbohydrate and total calorie intake per body weight, while fat intake remains equivalent. Unexpectedly, this CAST genomic segment also confers two new physical activity phenotypes: 22% higher spontaneous physical activity levels and significantly increased voluntary wheel-running activity compared with the parental B6 strain. Overall, these data suggest that gene(s) involved in carbohydrate preference and increased physical activity are contained within the proximal region of Chr 17. Interval-specific microarray analysis in hypothalamus and skeletal muscle revealed differentially expressed genes within the subcongenic region, including neuropeptide W (Npw); glyoxalase I (Glo1); cytochrome P450, family 4, subfamily f, polypeptide 1 (Cyp4f15); phospholipase A2, group VII (Pla2g7); and phosphodiesterase 9a (Pde9a). This subcongenic strain offers a unique model for dissecting the contributions and possible interactions among genes controlling food intake and physical activity, key components of energy balance.


Mammalian Genome | 1993

High-resolution mapping of a minor histocompatibility antigen gene on mouse chromosome 2.

Aamir R. Zuberi; Derry C. Roopenian

Minor histocompatibility (H) loci are significant tissue transplantation barriers but are poorly understood at the genetic and molecular level. We describe the construction of a high-resolution genetic map that positions a class II MHC-restricted minor H antigen locus and orders 12 other genes and genetic markers within the we-un interval of mouse Chromosome (Chr) 2. An intersubspecific backcross between 10.UW/Sn-H-3b and CAST/Ei, an inbred stock of Mus musculus castaneus, was used for this purpose. A total of 1168 backcross mice were generated, and 71 we-un recombinants were identified. Significant compression of the genetic map in males versus females and transmission distortion of CAST-derived we, un, and Aw genes were observed. Monoclonal T cell lines specific for two minor H alloantigens, Hd-1a and Hd2a, encoded by gene(s) that map to the we-un interval were used to antigen type the backcross mice. The results suggest the Hd-1a and Hd-2a antigens are most likely encoded by a single gene, now referred to as H-3b. The determined gene order is we-0.09±0.09-Itp-0.62±0.23-D2Mit77-0.26±0.15[Evi-4, Pcna, Prn-p]-0.26±0.15-Scg-1-0.44±0.19-[Bmp2a, D2Mit70]-0.09±0.09-[D2Mit19, D2Mit46]-1.59±0.36-D2Mit28-0.97±0.28-D2Lerl-1.50±0.35-H-3b-0.26±0.15-un (% recombination±1 SE). Because the average resolution of the backcross is 0.09 cM, the backcross panel should facilitate the physical mapping and molecular identification of a number of genes in this chromosome region.


Journal of Immunology | 1998

The Molecular and Functional Characterization of a Dominant Minor H Antigen, H60

Subramaniam Malarkannan; Patty Shih; Peter A. Eden; Tiffany Horng; Aamir R. Zuberi; Greg Christianson; Derry C. Roopenian; Nilabh Shastri


Human Molecular Genetics | 1999

Genetic Modification of Hearing in Tubby Mice: Evidence for the Existence of a Major Gene (moth1) Which Protects Tubby Mice from Hearing Loss

Akihiro Ikeda; Qing Yin Zheng; Philip Rosenstiel; Terry P. Maddatu; Aamir R. Zuberi; Derry C. Roopenian; Michael A. North; Jürgen K. Naggert; Kenneth R. Johnson; Patsy M. Nishina

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Nilabh Shastri

University of California

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Akihiro Ikeda

University of Wisconsin-Madison

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Carolyn R. Moomaw

University of Texas Southwestern Medical Center

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Clive A. Slaughter

University of Texas Southwestern Medical Center

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Joel D. Taurog

University of Texas Southwestern Medical Center

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Lisa Mendoza

University of California

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Patsy M. Nishina

Children's Hospital Oakland Research Institute

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