Abdullah Hamadeh

Global State Synchronization in Networks of Cyclic Feedback Systems

This technical note studies global asymptotic state synchronization in networks of identical systems. Conditions on the coupling strength required for the synchronization of nodes having a cyclic feedback structure are deduced using incremental dissipativity theory. The method takes advantage of the incremental passivity properties of the constituent subsystems of the network nodes to reformulate the synchronization problem as one of achieving incremental passivity by coupling. The method can be used in the framework of contraction theory to constructively build a contracting metric for the incremental system. The result is illustrated for a network of biochemical oscillators.

Synchronization of Parallel Single-Phase Inverters With Virtual Oscillator Control

A method to synchronize and control a system of parallel single-phase inverters without communication is presented. Inspired by the phenomenon of synchronization in networks of coupled oscillators, we propose that each inverter be controlled to emulate the dynamics of a nonlinear dead-zone oscillator. As a consequence of the electrical coupling between inverters, they synchronize and share the load in proportion to their ratings. We outline a sufficient condition for global asymptotic synchronization and formulate a methodology for controller design such that the inverter terminal voltages oscillate at the desired frequency, and the load voltage is maintained within prescribed bounds. We also introduce a technique to facilitate the seamless addition of inverters controlled with the proposed approach into an energized system. Experimental results for a system of three inverters demonstrate power sharing in proportion to power ratings for both linear and nonlinear loads.

Synchronization of Nonlinear Oscillators in an LTI Electrical Power Network

Sufficient conditions are derived for the global asymptotic synchronization of a class of identical nonlinear oscillators coupled through a linear time-invariant network. In particular, we focus on systems where oscillators are connected to a common node through identical branch impedances. For such networks, it is shown that the synchronization condition is independent of the number of oscillators and the value of the load impedance connected to the common node. Theoretical findings are then leveraged to control a system of parallel single-phase voltage source inverters serving an impedance load in an islanded microgrid application. The ensuing paradigm: i) does not necessitate communication between inverters, ii) is independent of system load, and iii) facilitates a modular design approach because the synchronization condition is independent of the number of oscillators. We present both simulation and experimental case studies to validate the analytical results and demonstrate the proposed application.

Output synchronization in networks of cyclic biochemical oscillators

This paper is concerned with the global analysis of asymptotic synchronization of outputs in networks of identical oscillators. The oscillator models are assumed to possess a cyclic feedback structure. Such networks of oscillators abound in biochemistry, and are exemplified by circadian rhythm and cardiac cell networks. The main result exploits an incremental output feedback passivity property of cyclic feedback systems to prove global asymptotic output synchronization in a network composed of identical cyclic feedback systems. This result is illustrated on a network of Goodwin oscillators.

Synchronization of Nonlinear Circuits in Dynamic Electrical Networks With General Topologies

Sufficient conditions are derived for global asymptotic synchronization in a system of identical nonlinear electrical circuits coupled through linear time-invariant (LTI) electrical networks. In particular, the conditions we derive apply to settings where: i) the nonlinear circuits are composed of a parallel combination of passive LTI circuit elements and a nonlinear voltage-dependent current source with finite gain; and ii) a collection of these circuits are coupled through either uniform or homogeneous LTI electrical networks. Uniform electrical networks have identical per-unit-length impedances. Homogeneous electrical networks are characterized by having the same effective impedance between any two terminals with the others open circuited. Synchronization in these networks is guaranteed by ensuring the stability of an equivalent coordinate-transformed differential system that emphasizes signal differences. The applicability of the synchronization conditions to this broad class of networks follows from leveraging recent results on structural and spectral properties of Kron reduction-a model-reduction procedure that isolates the interactions of the nonlinear circuits in the network. The validity of the analytical results is demonstrated with simulations in networks of coupled Chuas circuits.

A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides.

BackgroundDeveloping methods for understanding the connectivity of signalling pathways is a major challenge in biological research. For this purpose, mathematical models are routinely developed based on experimental observations, which also allow the prediction of the system behaviour under different experimental conditions. Often, however, the same experimental data can be represented by several competing network models.ResultsIn this paper, we developed a novel mathematical model/experiment design cycle to help determine the probable network connectivity by iteratively invalidating models corresponding to competing signalling pathways. To do this, we systematically design experiments in silico that discriminate best between models of the competing signalling pathways. The method determines the inputs and parameter perturbations that will differentiate best between model outputs, corresponding to what can be measured/observed experimentally. We applied our method to the unknown connectivities in the chemotaxis pathway of the bacterium Rhodobacter sphaeroides. We first developed several models of R. sphaeroides chemotaxis corresponding to different signalling networks, all of which are biologically plausible. Parameters in these models were fitted so that they all represented wild type data equally well. The models were then compared to current mutant data and some were invalidated. To discriminate between the remaining models we used ideas from control systems theory to determine efficiently in silico an input profile that would result in the biggest difference in model outputs. However, when we applied this input to the models, we found it to be insufficient for discrimination in silico. Thus, to achieve better discrimination, we determined the best change in initial conditions (total protein concentrations) as well as the best change in the input profile. The designed experiments were then performed on live cells and the resulting data used to invalidate all but one of the remaining candidate models.ConclusionWe successfully applied our method to chemotaxis in R. sphaeroides and the results from the experiments designed using this methodology allowed us to invalidate all but one of the proposed network models. The methodology we present is general and can be applied to a range of other biological networks.

Oscillator-Based Inverter Control for Islanded Three-Phase Microgrids

A control scheme is proposed for an islanded low-inertia three-phase inverter-based microgrid with a high penetration of photovoltaic (PV) generation resources. The output of each inverter is programmed to emulate the dynamics of a nonlinear oscillator. The virtual oscillators within each controller are implicitly coupled through the physical electrical network. The asymptotic synchronization of the oscillators can be guaranteed by design, and as a result, a stable power system emerges innately with no communication between the inverters. Time-domain switching-level simulation results for a 45-kW microgrid with 33% PV penetration demonstrate the merits of the proposed technique; in particular they show that the load voltage can be maintained between prescribed bounds in spite of variations in incident irradiance and step changes in the load.

Feedback control architecture and the bacterial chemotaxis network.

Bacteria move towards favourable and away from toxic environments by changing their swimming pattern. This response is regulated by the chemotaxis signalling pathway, which has an important feature: it uses feedback to ‘reset’ (adapt) the bacterial sensing ability, which allows the bacteria to sense a range of background environmental changes. The role of this feedback has been studied extensively in the simple chemotaxis pathway of Escherichia coli. However it has been recently found that the majority of bacteria have multiple chemotaxis homologues of the E. coli proteins, resulting in more complex pathways. In this paper we investigate the configuration and role of feedback in Rhodobacter sphaeroides, a bacterium containing multiple homologues of the chemotaxis proteins found in E. coli. Multiple proteins could produce different possible feedback configurations, each having different chemotactic performance qualities and levels of robustness to variations and uncertainties in biological parameters and to intracellular noise. We develop four models corresponding to different feedback configurations. Using a series of carefully designed experiments we discriminate between these models and invalidate three of them. When these models are examined in terms of robustness to noise and parametric uncertainties, we find that the non-invalidated model is superior to the others. Moreover, it has a ‘cascade control’ feedback architecture which is used extensively in engineering to improve system performance, including robustness. Given that the majority of bacteria are known to have multiple chemotaxis pathways, in this paper we show that some feedback architectures allow them to have better performance than others. In particular, cascade control may be an important feature in achieving robust functionality in more complex signalling pathways and in improving their performance.

Constructive synchronization of networked feedback systems

This paper is concerned with global asymptotic output synchronization in networks of identical feedback systems. Using an operator theoretic approach based on an incremental small gain theorem, the method reformulates the synchronization problem as one of achieving incremental stability using a coupling operator that plays the role of an incrementally stabilizing feedback. In this way, conditions on static or dynamic coupling operators that achieve output synchronization of nodes of arbitrary structure are derived. These conditions lead to a methodology for the construction of coupling architectures that ensure output synchronization of a wide range of systems. The result is illustrated for a network of biochemical oscillators.

Transient dynamic phenotypes as criteria for model discrimination: fold-change detection in Rhodobacter sphaeroides chemotaxis

The chemotaxis pathway of the bacterium Rhodobacter sphaeroides shares many similarities with that of Escherichia coli. It exhibits robust adaptation and has several homologues of the latters chemotaxis proteins. Recent theoretical results have correctly predicted that the E. coli output behaviour is unchanged under scaling of its ligand input signal; this property is known as fold-change detection (FCD). In the light of recent experimental results suggesting that R. sphaeroides may also show FCD, we present theoretical assumptions on the R. sphaeroides chemosensory dynamics that can be shown to yield FCD behaviour. Furthermore, it is shown that these assumptions make FCD a property of this system that is robust to structural and parametric variations in the chemotaxis pathway, in agreement with experimental results. We construct and examine models of the full chemotaxis pathway that satisfy these assumptions and reproduce experimental time-series data from earlier studies. We then propose experiments in which models satisfying our theoretical assumptions predict robust FCD behaviour where earlier models do not. In this way, we illustrate how transient dynamic phenotypes such as FCD can be used for the purposes of discriminating between models that reproduce the same experimental time-series data.