Abe Shegro Gerrano

Physicochemical properties of starches with variable amylose contents extracted from bambara groundnut genotypes

The physicochemical properties of starches extracted from five bambara genotypes were investigated. Bambara starch granules were predominantly oval shaped with a smooth surface and an average size of 26±0.2μm. The amylose contents (20-35%) varied significantly among genotypes. X-ray diffraction revealed the C-type pattern for all starches with relative crystallinity range: 29-35%. FTIR spectra of bambara starches showed variable peak intensities at 2931, 1655 and 860cm(-1), which corresponds to CH stretching, H2O bending vibrations and CO stretching, respectively. Bambara genotype with the highest amylose content showed the lowest intensity at wavenumber 2931cm(-1). With the exception of oil absorption which was similar, swelling power, water absorption and paste clarity of starches were significantly different among genotypes. Genotype with high amylose content showed restricted swelling, low paste clarity and great ability to absorb water. All bambara starches displayed a shear thinning behaviour (n<1).

Genetic diversity of Amaranthus species in South Africa

Amaranthus species plays an important role in sustaining food security and alleviation of malnutrition in South Africa. A number of Amaranthus genotypes have been collected and conserved in the gene bank of the ARC–Roodeplaat Vegetable and Ornamental Plant Institute, South Africa. It is important to genetically evaluate germplasm and select superior parental lines for utilisation in future Amaranthus breeding in the country. Thirty-two Amaranthus genotypes were therefore selected and evaluated in field plantings for quantitative morphological traits using a randomised complete block design across two seasons. Genetic parameters were estimated for 14 phenotypic traits and a considerable amount of genetic variability was observed. Characters such as thousand seed weight, dry biomass, number of leaves, leaf length and panicle length showed high heritability estimates and genetic advance. The Pearson correlation coefficient for the traits showed that there were significant (P ≤ 0.01) correlations among some of the phenotypic traits. Cluster analysis grouped the genotypes into six different groups and a singleton based on their genetic similarity. The clustering of the genotypes based on their genetic similarity will help in the identification of diverse parents for use in the breeding programme.

Genetic variability in cowpea (Vigna unguiculata (L.) Walp.) genotypes

Information on genetic variability among the existing cowpea genotypes will increase the efficiency of the cowpea improvement. Field experiments were conducted at the Agricultural Research Council–Roodeplaat Vegetable and Ornamental Plant Institute in South Africa, in 2011 and 2012, to estimate the level of phenotypic variability among a collection of 25 cowpea genotypes. The experiment was laid out in a randomised complete block design with three replications. Sixteen phenotypic markers were recorded. Analysis of variance for the phenotypic traits revealed that differences among genotypes were highly significant for all traits. This indicated the high level of genetic variability among the cowpea genotypes studied. Genetic and phenotypic coefficient of variation, and broad-sense heritability were estimated for all phenotypic traits. The first five principal components showed 79.30% of the total variability among the genotypes. Pod length, leaf area, leaf area index and number of seeds per plant contributed mainly to PC1 and leaf number, plant height, dry biomass and fresh biomass contributed mainly to PC2. Cluster analysis of the phenotypic traits resulted in five distinct groups of genotypes. The phenotypic traits therefore provide a useful measure of genetic distances among the cowpea genotypes and will enable the identification of potential parental materials for future breeding efforts. Genotypes IT93K129-4, Fahari, Glenda and Veg cowpea Dakama Cream were associated with desirable grain yield characteristics and are recommended as suitable parental lines for improvement of grain production. Genotypes 5431, Tatro mix, Kisumu mix and Okalulenu were identified to possess good vegetative traits and are also recommended for use as suitable parents when breeding for leafy vegetable or for fodder production.

Genetic diversity assessment in sorghum accessions using qualitative morphological and amplified fragment length polymorphism markers

Qualitative morphological and amplified fragment length polymorphism (AFLP) markers were compared for assessment of genetic diversity. Nine qualitative morphological traits were recorded to compare genetic relationships among 17 sorghum accessions with information derived from six AFLP primer combinations analysis. The mean morphological genetic similarity was lower in comparison to similarity computed using AFLP markers. Genetic similarity measured by AFLP markers was similar within the Ethiopian and South African material, as well as between South African and Ethiopian material. Morphological similarity was much higher in the Ethiopian material than in the South African material, indicating that the genotypes were related. The two techniques described genetic variability in different ways. Dendrogram generated from the morphological data matrix separated accession 216737 as being genetically distinct from the rest of the accessions. Accessions M101 and 97MW6127 were the most dissimilar accessions based on AFLP data.

Draft Genome Sequence of Alternaria alternata Isolated from Onion Leaves in South Africa

ABSTRACT Alternaria alternata (Fr.) Keissler strain PPRI 21032 was isolated from onion leaves collected in Roodeplaat, Pretoria, South Africa. The whole genome of this strain was sequenced and produced a total of 33.12 Mb with a GC content of 50.9%. The whole genome comprises 11,701 predicted coding sequences.

Genetic variability among sorghum accessions for seed starch and stalk total sugar content

Sorghum (Sorghum bicolor (L.) Moench) is a staple food grain in many semi-arid and tropical areas of the world, notably in sub-Saharan Africa because of its adaptation to harsh environments. Among important biochemical components for sorghum for processors are the levels of starch (amylose and amylopectin) and total sugar contents. The aim of this study was to determine the genetic variation for total starch in the seed, its components and total sugar in the stalks of the sorghum accessions from Ethiopia and South Africa. Samples of 22 sorghum accessions were evaluated. Significant variations were observed in total starch (31.01 to 64.88 %), amylose (14.05 to 18.91 %), the amylose/amylopectin ratio (0.31 to 0.73) and total stalk sugar content (9.36 to 16.84 %). Multivariate analysis showed a wide genetic variation within and among germplasm accessions which could be used in the selection of parental lines for the improvement of traits of interest through breeding. The variation found among the sorghum accessions shows that an improved total starch and starch components and stalk sugar contents can be achieved through crossing these selected genotypes.

Anti-nutrient analysis of 30 Bambara groundnut (Vigna subterranea) accessions in South Africa

ABSTRACT Bambara groundnut is a leguminous crop that originated in West Africa. It is a drought-tolerant crop and has the potential to provide improved food and nutritional security in the dry areas of Africa. However, the plant contains anti-nutritional factors that affect its food value chain. The objective of this study was to assess the content of four major anti-nutritional factors in 30 bambara groundnut accessions in South Africa. The seeds of the bambara groundnut landraces were ground to make a fine powder and assessed for condensed tannins (CTs), phytic acid phosphate (PAP), polyphenol, and trypsin inhibitor content. Each assay was done in triplicate. The content of the four anti-nutritional compounds varied widely among the bambara groundnut accessions. The mean values for CTs ranged between 0.2 and 6.2 mg/g of prodephinidin equivalent, whereas that of the PAP was between 1.4 and 4.9 mg/g. A low mean polyphenol content of 0.4 mg/g of GA (gallic acid) equivalent was observed among the accessions. The level of trypsin inhibitor ranged from 5.3 to 73.4 TI/mg. With the exception of CTs and trypsin inhibitor, no significant correlation was observed among the four anti-nutritional factors assessed in this study. Generally, higher levels of anti-nutrients were observed in this study compared with certain studies reported earlier.

Characterisation of agro-morphological traits of corchorus accessions

ABSTRACT The genus Corchorus includes nutrient-rich indigenous leafy vegetables often grown or harvested in the wild in Africa. It has potential to contribute to food security, but there is need to improve it as a crop through plant breeding. However, not much is known about the genetic variability among Corchorus species. The aim of this study was thus to characterise the available germplasm of Corchorus accessions and investigate heritability of their agro-morphological traits. Eleven Corchorus accessions (4 South African and 7 from the World Vegetable Center) were evaluated in a field study at Roodeplaat, South Africa, for their morpho-agronomic traits using a randomised complete block design with three replications across two seasons (2015/2016 and 2016/2017). Data were subjected to ANOVA, principal component analysis and cluster analysis. Broad sense heritability, genetic advance, genetic parameters and correlations were determined among the accessions and traits. The Corchorus accessions showed significant (P < .05) differences in all the quantitative traits evaluated. The data showed significant variability among the studied Corchorus accessions in their agro-morphological traits for exploitation in future breeding programmes that in turn can contribute to the improvement of this crop.

Evaluation and selection of taro [Colocasia esculentra (L.) Schott] accessions under dryland conditions in South Africa

ABSTRACT Taro [Colocasia esculenta (L.) Schott] is an important underutilised staple food crop in South Africa, with a lot of potential to address food insecurity among poor rural households. Development of high yielding stable taro cultivars is one of the most important goals of plant breeders. Twenty-nine taro accessions collected from major taro producing regions of the country were evaluated for growth performance, yield potential and stability under dryland conditions at two sites (Umbumbulu and Roodeplaat) in 2013, 2014 and 2015 cropping seasons. The experiment was laid in a randomised complete block design replicated three times. Growth and yield traits were measured. Analysis of variance and correlation analysis was done on all measured traits. The genotype by environment interaction was analysed using additive main effects and multiplicative interaction (AMMI). As a result, significant variation was observed for most of the traits except number of leaves and leaf width as well as number of suckers, while all the traits showed significant variation for location by year interaction. Number of corms showed significant variation for location by year by genotype interaction among all the traits evaluated. Genotype effect was highly significant (p < .01) on plant height, corm length, number of corms and significant (p < .05) on yield. The significant difference between genotypes for these traits proves that there was a genetic variability and there is a scope for selection. The correlation study also reveals that majority of the characters were positively correlated with each other. Total yield was positively and highly significantly (p < .01) correlated with all the measured traits. AMMI was effective in identifying stable genotypes. The top ranking cultivars per environment may be considered for cultivation under the specific environment, the stable cultivars may be considered for cultivation across all the taro growing regions.

Selection of cowpea genotypes based on grain mineral and total protein content

ABSTRACT Grain legumes, including cowpea, are the cheapest sources of minerals and protein to enhance human nutrition. Cultivar development and deployment of cowpea with increased grain mineral content and protein composition rely on selection of genetically unique and complementary breeding lines. The objective of this study was to assess the grain minerals and protein composition of diverse cowpea collections of eastern, southern and western Africa to select promising parents to develop a breeding population. Twenty-two genetically diverse cowpea genotypes were field evaluated using a randomised complete block design with three replications in two locations in South Africa. The dried grain mineral contents were determined using an Atomic Absorption Spectrophotometre, while the protein content was determined by the combustion method. Analyses of variance showed significant (P < 0.05) effects of genotypes, locations and their interactions. The test genotypes showed considerable variation for the following nine mineral contents: calcium (Ca), copper (Cu), iron (Fe), potassium (K), magnesium (Mg), manganese (Mn), sodium (Na), phosphorus (P), and zinc (Zn) varying from 0.07 to 0.12 mg kg−1; 4.46 to 7.81 mg kg−1; 0.06 to 0.11 g; 11.82 to 14.45 g; 1.86 to 2.27 g; 9.24 to 13.30 mg kg−1; 0.26 to 0.80 g; 4.63 to 5.92 g and 0.03.00 to 0.05 g, respectively. Further, the total protein content varied from 23.16 to 28.13%. Significant correlations were detected among some mineral elements and total protein content, suggesting the possibility of simultaneous selection for these traits. The principal component analysis (PCA) identified four principal components (PCs) contributing to 70.93% of the total explained variation amongst genotypes. Overall the following genotypes with desirable grain mineral and protein attributes were selected: IT90K-59 (Ca), 98K-5301 (Ca and protein), ITOOK-1060 (Cu), ITOOK-1217 and IT845-2246 (Fe), Bensogla (K, Na, and P), TVU11424 and ITOOK-1217 (Mg), CH14 (Mn and Na), TVU12637 (Mn) and Glenda and Vuli (Zn). The selected cowpea genotypes are useful genetic resources for population and cultivar development for grain nutrients composition.