Aboubakar S. Ouattara

Stenotrophomonas acidaminiphila sp. nov., a strictly aerobic bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor.

Two of several strictly aerobic, mesophilic bacteria isolated from a lab-scale upflow anaerobic sludge blanket (UASB) reactor treating a petrochemical wastewater, strains AMX 17 and AMX 19T, were subjected to detailed taxonomic study. Cells were gram-negative, motile, non-sporulating, straight to curved rods with a polar flagellum. The isolates exhibited phenotypic traits of members of the genus Stenotrophomonas, including cellular fatty acid composition and the limited range of substrates that could be used. Sugars and many amino acids were utilized. Antibiotic susceptibility and physiological characteristics were determined. The DNA base composition was 66.9 mol% G+C. Phylogenetic analysis revealed that the nearest relatives were Stenotrophomonas maltophilia LMG 11114, Stenotrophomonas nitritireducens DSM 12575T and Pseudomonas pictorum ATCC 23328T (similarity of 98.1-98.8%). Xanthomonas species, S. maltophilia LMG 958T and Stenotrophomonas africana CIP 104854T showed high 16S rRNA sequence similarities (96.4-97.3%). The high similarity found in cellular fatty acid profiles and identical partial 16S rRNA sequences (500 bp) for strains AMX 17 and AMX 19T indicate that they belong to the same species. DNA-DNA hybridizations revealed respectively 26.7, 31, 65.8 and 43.6% homology between isolate AMX 19T and S. africana CIP 104854T, S. maltophilia CIP 60.77T, S. nitritireducens DSM 12575T and P. pictorum ATCC 23328T. These results allow the proposal of strain AMX 19T (= DSM 13117T = ATCC 700916T = CIP 106456T) as representative of a novel species of the genus Stenotrophomonas, with the name Stenotrophomonas acidaminiphila sp. nov.

Methanobacterium congolense sp. nov., from a methanogenic fermentation of cassava peel.

Strain CT, a non-motile, mesophilic, hydrogenotrophic, methanogenic bacterium, was isolated from an anaerobic digester used for the treatment of raw cassava-peel waste in Congo. The cells were rods, 0.4-0.5 x 2-10 microm in size, and stained Gram-positive. Hydrogen and carbon dioxide were the only substrates that supported growth and methane production. Methane production, but not growth, occurred with CO2 in the presence of either 2-propanol, 2-butanol or cyclopentanol as hydrogen donors. The temperature range for growth was 25-50 degrees C, the optimum being between 37 and 42 degrees C. The optimum pH for growth was 7.2; consistent growth and methane production were not observed below pH 5.9 or above pH 8.2. The doubling time under optimal growth conditions was 7.5 h. The DNA base composition was 39.5 mol% G+C. On the basis of 16S rRNA gene sequence analysis and phenotypic characteristics, the isolate is proposed as a new species of the genus Methanobacterium, namely Methanobacterium congolense sp. nov. The type strain is strain CT (= DSM 7095T = OCM 779T).

Sunlight inactivation of Escherichia coli in waste stabilization microcosms in a sahelian region (Ouagadougou, Burkina Faso)

Experiments on sunlight inactivation of Escherichia coli were conducted from November 2006 to June 2007 in eight outdoors microcosms with different depths filled with maturation pond wastewater in order to determine pond depth influence on sunlight inactivation of E. coli. The long-term aim was to maximize sunlight inactivation of waterborne pathogens in waste stabilization ponds (WSPs) in sahelian regions where number of sunny days enable longer exposure of wastewater to sunlight. The inactivation was followed during daylight from 8.00 h to 17.00 h and during the night. Sunlight inactivation rates (K(S)), as a function of cumulative global solar radiation (insolation), were 16 and 24 times higher than the corresponding dark inactivation (K(D)) rates, respectively in cold and warm season. In warm season, E. coli was inactivated far more rapidly. Inactivation of E. coli follows the evolution of radiation during the day. In shallow depth microcosms, E. coli was inactivated far more rapidly than in high depth microcosms. The physical chemical parameters [pH, dissolved oxygen (DO)] of microcosms water were higher in shallow depth microcosms than in high depth microcosms suggesting a synergistic effect of sunlight and these parameters to damage E. coli. To increase the efficiency of the elimination of waterborne bacteria, the use of maturation ponds with intermediate depths (0.4m) would be advisable in view of the high temperatures and thus evaporation recorded in sahelian regions.

The impact of pond depth and environmental conditions on sunlight inactivation of Escherichia coli and enterococci in wastewater in a warm climate

Microcosm experiments were carried out under dark and real sunlight conditions in Ouagadougou (Burkina Faso) to investigate the survival of faecal indicators (Escherichia coli and enterococci) in secondary wastewater. Light damage was estimated by loss of bacterial culturability. The results clearly show that sunlight has a deleterious effect on the survival of both indicators. The mean dark inactivation coefficients for E. coli and enterococci were 0.045 and 0.047 h(-1), respectively, whereas inactivation coefficients in the shallowest microcosm (0.1 m) in illuminated conditions were 0.796 and 0.559 h(-1), respectively. No significant effect of pond depth (0.1-0.9 m) on the inactivation of both indicators was observed in the dark. However, the effect of depth was significant in the microcosms exposed to sunlight, probably because of attenuation. In illuminated conditions, enterococci were broadly inactivated more rapidly than E. coli (T90 = 26.81 h for E. coli and 15.67 h for enterococci in the 0.4 m microcosm). However, E. coli presented greater variability in the survival capabilities, suggesting difficulties in interpreting data using only E. coli as an indicator. Therefore, the use of both indicators together should be advisable for the assessment of effluent quality from waste stabilization ponds in the Sahelian region.

Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an african ricefield, and phylogeny of Desulfovibrio alcoholivorans

A sulfate-reducing bacterium, strain HDvT (T = type strain), was isolated from an anoxic ricefield soil. Cells were Gram-negative, non-sporulating curved rods motile by means of a single polar flagellum. Cytochrome c3 and desulfoviridin were present. In the presence of sulfate, glycerol, 1,2- and 1,3-propanediol, dihydroxyacetone, pyruvate, lactate, fumarate, maleate, malate and succinate were incompletely oxidized mainly to acetate. Sulfite, thiosulfate, elemental sulfur, fumarate, maleate and malate were utilized as alternative electron acceptors. In the absence of added electron acceptors, pyruvate, fumarate, maleate, malate and dihydroxyacetone were fermented. The DNA base composition was 67 mol% G + C. The phylogenetic, phenotypic and physiological characteristics of strain HDvT indicate that it is a new species of the genus Desulfovibrio, for which the name Desulfovibrio burkinensis sp. nov. is proposed; the type strain is HDvT (= DSM 6830T). Phylogenetic analysis confirmed that Desulfovibrio alcoholivorans was a distinct species supporting the previously published phenotypic data.

Characterization of Anaerovibrio burkinabensis sp. nov., a Lactate- Fermenting Bacterium Isolated from Rice Field Soils

A strictly anaerobic, gram-negative bacterium was isolated from rice field soils by using lactate as a sole carbon and energy source. The cells were non-spore-forming, motile, curved rods. Optimal growth occurred at 35°C and pH 6.8. No NaCl requirement was observed. Vitamins were required for growth. Our isolate, strain B4B0 T (T = type strain), fermented pyruvate, fumarate, malate, citrate, dihydroxyacetone, fructose, 1,2-propanediol, glutamate, and aspartate to acetate, propionate, succinate, and traces of hydrogen. Strain B4B0 T did not use ribose or glycerol as an energy source, although glycerol degradation produced mainly 1,3-propanediol. Ferric iron was facultatively reduced. Nitrate and sulfate were not reduced. Cytochrome b was present. The guanine-plus-cytosine content of the DNA was 44.1 ± 0.1 mol%. We propose that strain B4B0 (= DSM 6283) should be the type strain of a new species in the genus Anaerovibrio, Anaerovibrio burkinabensis.

Distribution of resistance genes encoding ESBLs in Enterobacteriaceae isolated from biological samples in health centers in Ouagadougou, Burkina Faso

ObjectiveResistance to antibiotics most especially third generation cephalosporins has assumed a worrisome dimension globally. Genes conferring these resistance which are mediated by enzymes known as extended spectrum beta-lactamases (ESBLs) are now wide spread among several Enterobacteriaceae species. However there is paucity of data regarding the distribution of these genes in Burkina Faso. Hence this prospective study aims to determine the prevalence and distribution of ESBL encoding genes in ESBL producing Enterobacteriaceae strains isolated from clinical samples of patients attending the three major hospitals in Ouagadougou Burkina Faso.ResultsESBL-encoding genes were assayed in 187 ESBL producing Enterobacteriaceae strains. Among these isolates, the prevalence of ESBL-producing strains with blaTEM, blaSHV and blaCTX-M genes were 26.2% (49/187), 5.9% (11/187) and 40.1% (75/187) respectively. The association of ESBL encoding genes with health centers was statistically significant (p = 0.0209). Approximately 39.6% of E. coli harbored CTX-M and Klebsiella spp. 5.9%. This study demonstrates the dissemination of TEM, SHV and CTX-M genes in ESBL producing Enterobacteriaceae strains in Ouagadougou. Continuous spread of these bacteria poses great public health risk, thus increased surveillance and regulation of antibiotics use is imperative in Burkina Faso.