Adity Bose

Interactions of guanine and guanosine hydrates with quinones: a laser flash photolysis and magnetic field effect study.

Laser flash photolysis and an external magnetic field have been used to study the interaction of two quinone molecules, namely, 9,10-anthraquinone (AQ) and 2-methyl 1,4-naphthoquinone, commonly known as menadione (MQ), with one of the DNA bases, guanine (G) and its nucleoside guanosine hydrate (dG). In organic homogeneous medium, it has been observed that G undergoes a predominant hydrogen (H) abstraction reaction with both the quinones while dG supports photoinduced electron transfer (PET) along with H abstraction. On the other hand, in SDS medium, G supports PET with AQ but not with MQ. However, behavior of dG remains unperturbed toward AQ and MQ with the change in medium. All of these observations have been explained on the basis of stabilization of radical ion pair and difference in size of the quinones, which can affect the distance of approach among the interacting molecules.

Medium-dependent interactions of quinones with cytosine and cytidine : A laser flash photolysis study with magnetic field effect

Laser flash photolysis and an external magnetic field have been used for the study of the interaction of two quinone molecules, namely, 9,10-anthraquinone (AQ) and 2-methyl 1,4-naphthoquinone (or menadione, MQ) with a DNA base, cytosine (C) and its nucleoside cytidine (dC) in two media, a homogeneous one composed of acetonitrile/water (ACN/H(2)O, 9:1, v/v) and a SDS micellar heterogeneous one. We have applied an external magnetic field for the proper identification of the transients formed during the interactions in micellar media. Cytosine exhibits electron transfer (ET) followed by hydrogen abstraction (HA) while dC reveals a reduced ET compared to C, with both quinones in organic homogeneous medium (ACN/H(2)O). Due to a higher electron affinity, AQ supports more faciler ET than MQ with dC in ACN/H(2)O but observations in SDS have been just the reverse. In SDS, ET from dC is completely quenched and a dominant HA is all that could be discerned. This work reveals two main findings: first, a drop in ET on addition of a ribose unit to C, which has been attributed to a role of keto-enol tautomerism in inducing ET from electron-rich nucleus and second, the effect of medium in controlling reaction mechanism by favoring HA with AQ although it is intrinsically more prone towards ET.

Laser Flash Photolysis and Magnetic Field Effect Studies on the Interaction of Uracil and Its Derivatives with Menadione and 9,10-Anthraquinone

Laser flash photolysis and an external magnetic field have been used to study the interaction of two quinone molecules, namely, 9,10-anthraquinone (AQ) and 2-methyl-1,4-naphthoquinone, commonly known as menadione (MQ), with the RNA base uracil (U) and two of its derivatives, 1,3-dimethyluracil (dmU) and uridine (dU). We have conducted our studies in homogeneous organic and heterogeneous micellar media in order to investigate the effect of media on the molecules and any change in reactivity on account of substitution. In organic homogeneous medium, both the quinones have behaved similarly with the bases. Here U has undergone both electron transfer (ET) and hydrogen (H) transfer, while dU and dmU have failed to exhibit any ET. Failure to support ET has been attributed to keto-enol tautomerism, which has been found to have a significant role in determining the occurrence of ET from these pyrimidine bases. However, in SDS micelles some variations regarding the reactivity of these molecules have been discerned. The variations are 2-fold. Here ET from U has been found to get completely eclipsed by a dominant H abstraction with both the quinones, and AQ reveals a difference in the extent of H abstraction with the bases in SDS. With U and dU, the prevailing H abstraction with AQ has succeeded in formation of only AQH(*), while dmU has produced both AQH(*) and AQH(2), the latter being formed by two successive H abstraction. Explanations of this intriguing behavior with U and its derivatives with quinone molecules have been the main concern in this work.

Laser flash photolysis and magnetic-field-effect studies on interaction of thymine and thymidine with menadione: role of sugar in controlling reaction pattern

Abstract The magnetic field effect (MFE) in conjunction with laser flash photolysis has been used for the study of the interaction of one of the small drug like quinone molecules, 2-methyl, 1,4-naphthoquinone, commonly known as menadione (MQ), with one of the DNA bases, thymine (THN), and its corresponding nucleoside, thymidine (THDN), in acetonitrile (ACN) and sodium dodecylsulfate (SDS) micelles. It has been observed that THN undergoes electron transfer (ET) and hydrogen (H) abstraction with MQ, while THDN undergoes only H abstraction in both the media. However, our earlier studies showed that a purine base, adenine (ADN), and its nucleoside, 2′-deoxyadenosine (ADS), undergo ET in ACN and H abstraction in SDS. Here we have attempted to explain the differences in the reactions of these DNA bases with MQ. We also reveal the crucial role of a sugar unit in altering the behavior of purine and pyrimidine bases with respect to ET and H abstraction.

Magnetic field effect on photoinduced electron transfer between [Cu(phen)2]2+ and DNA.

The magnetic field effect (MFE) on the photoinduced electron transfer (PET) reaction between the [Cu(phen)2]2+ complex and DNA has been studied in homogeneous buffer medium and in reverse micelles. The copper complex on photoexcitation can oxidize DNA in a deoxygenated environment. A prominent MFE is found even in a homogeneous aqueous medium for the triplet born radicals. The process of partial intercalation of [Cu(phen)2]2+ complex within DNA is responsible for such a rare observation. In reverse micelles, the MFE is not very much prominent because of the large separation distance between the component radicals of the geminate radical ion pairs generated through PET.

Investigation on the interaction of Rutin with serum albumins: Insights from spectroscopic and molecular docking techniques

The binding interaction of Rutin, a flavonoid, with model transport proteins, bovine serum albumin (BSA) and human serum albumin (HSA), were investigated using different spectroscopic techniques, such as fluorescence, time-resolved single photon counting (TCSPC) and circular dichroism (CD) spectroscopy as well as molecular docking method. The emission studies revealed that the fluorescence quenching of BSA/HSA by Rutin occurred through a simultaneous static and dynamic quenching process, and we have evaluated both the quenching constants individually. The binding constants of Rutin-BSA and Rutin-HSA system were found to be 2.14 × 106 M-1 and 2.36 × 106 M-1 at 298 K respectively, which were quite high. Further, influence of some biologically significant metal ions (Ca2+, Zn2+ and Mg2+) on binding of Rutin to BSA and HSA were also investigated. Thermodynamic parameters justified the involvement of hydrogen bonding and weak van der Waals forces in the interaction of Rutin with both BSA and HSA. Further a site-marker competitive experiment was performed to evaluate Rutin binding site in the albumins. Additionally, the CD spectra of BSA and HSA revealed that the secondary structure of the proteins was perturbed in the presence of Rutin. Finally protein-ligand docking studies have also been performed to determine the probable location of the ligand molecule.

Encapsulation of Thymol in cyclodextrin nano-cavities: A multi spectroscopic and theoretical study

Cyclodextrins have a wide range of applications in different areas of drug delivery and pharmaceutical industry due to their complexation ability and other versatile characteristics. Here we have studied the binding interactions of a small biologically important phenolic molecule, Thymol (Th), with both α and β cyclodextrins (CDs), which are well known drug delivery vehicles. Extent of encapsulation has been determined using several spectroscopic techniques. In fluorescence experiments, significant increase in fluorescence intensities have been discerned for both the CDs but there had been a much early saturation for αCD. Anisotropy experiments have been performed too and very surprisingly no appreciable increase in anisotropy value was observed in either case. Isothermal titration calorimetry (ITC) data, however, show signature of binding of Th with the βCD. These intriguing results were explained with the help of molecular docking and dynamics simulation studies. The docking calculations have shown that Th goes inside both α and βCD. In keeping with the final NMR data and molecular dynamics we have ultimately concluded that solvated Th molecules are the main participants in the interaction with CDs which is responsible for these intriguing behaviors. Finally we have also performed an antioxidant assay to reveal the practical application of such encapsulation. It has been found that on encapsulation there is an enhancement of the antioxidant behavior of Th. Then we have also performed an antibacterial assay to show the unchanged antibacterial properties of Th on encapsulation. Hence it can be deduced that Th can be safely delivered through CDs in living system without hampering its beneficial properties.

Photoacidic behavior of small phenolics in micellar media

ABSTRACT The present work demonstrates the photophysical characterization of the interaction of two antibacterial and antimicrobial compounds, thymol and its isomer, carvacrol with different biomimetic micellar nanocavities having varying surface charge characteristics. These types of molecules are reported to be photoacids and this behavior is remarkably exhibited upon interaction with the macromolecular assemblies of micellar systems in the presence of inorganic and organic quencher molecules (silver nitrate and diethylamine) and is manifested through significant modulations of the bimolecular quenching constant values.

Magnetic Field Effect: An Efficient Tool To Investigate The Mechanism Of Reactions Using Laser Flash Photolysis Technique

Magnetic field effect combined with laser flash photolysis technique have been used to study the mechanism of interactions between two drug‐like quinone molecules, Menadione (1,4‐naphthoquinone, MQ) and 9, 10 Anthraquinone (AQ) with one of the DNA bases, Adenine in homogeneous acetonitrile/water and heterogeneous micellar media. A switchover in reaction mode from electron transfer to hydrogen abstraction is observed with MQ on changing the solvent from acetonitrile/water to micelle; whereas, AQ retains its mode of interaction towards Adenine as electron transfer in both the media due to its bulky structure compared to MQ.