Ahmed H. Zewail

Four-Dimensional Electron Microscopy

Ultrafast Imaging Optical microscopy is generally limited in resolution by the wavelength of light incident on the substrate. Because these wavelengths, even in the ultraviolet, are on the order of hundreds of nanometers, electron beams have long been used instead to probe structural detail at the smallest scale. While offering exceptional spatial resolution, electrons repel one another and so cannot be compressed in time as easily as a pulse of light. Electron microscopy has thus traditionally been a comparatively static characterization method. Zewail (p. 187) reviews recent technological developments in stripping down the electron pulses used for imaging that have been able to introduce time resolution of trillionths of a second to this spatially precise technique. Local transformations ranging from graphite film oscillations to iron phase transitions have been tracked in this manner. The discovery of the electron over a century ago and the realization of its dual character have given birth to one of the two most powerful imaging instruments: the electron microscope. The electron microscope’s ability to resolve three-dimensional (3D) structures on the atomic scale is continuing to affect different fields, including materials science and biology. In this Review, we highlight recent developments and inventions made by introducing the fourth dimension of time in electron microscopy. Today, ultrafast electron microscopy (4D UEM) enables a resolution that is 10 orders of magnitude better than that of conventional microscopes, which are limited by the video-camera rate of recording. After presenting the central concept involved, that of single-electron stroboscopic imaging, we discuss prototypical applications, which include the visualization of complex structures when unfolding on different length and time scales. The developed UEM variant techniques are several, and here we illucidate convergent-beam and near-field imaging, as well as tomography and scanning-pulse microscopy. We conclude with current explorations in imaging of nanomaterials and biostructures and an outlook on possible future directions in space-time, 4D electron microscopy.

Proton-transfer reaction dynamics

In this article we discuss the progress made in understanding intermolecular and intermolecular reactions of proton (or hydrogen-atom) transfer. Femtosecond real-time probing, together with spectroscopic studies, in molecular beams are presented with selected examples of reactions. Reaction rates, tunneling dynamics and the nature of the reaction coordinate are examined and related to two-state multidimensional potential energy surfaces.

Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution

Biological water at the interface of proteins is critical to their equilibrium structures and enzyme function and to phenomena such as molecular recognition and protein–protein interactions. To actually probe the dynamics of water structure at the surface, we must examine the protein itself, without disrupting the native structure, and the ultrafast elementary processes of hydration. Here we report direct study, with femtosecond resolution, of the dynamics of hydration at the surface of the enzyme protein Subtilisin Carlsberg, whose single Trp residue (Trp-113) was used as an intrinsic biological fluorescent probe. For the protein, we observed two well separated dynamical solvation times, 0.8 ps and 38 ps, whereas in bulk water, we obtained 180 fs and 1.1 ps. We also studied a covalently bonded probe at a separation of ≈7 Å and observed the near disappearance of the 38-ps component, with solvation being practically complete in (time constant) 1.5 ps. The degree of rigidity of the probe (anisotropy decay) and of the water environment (protein vs. micelle) was also studied. These results show that hydration at the surface is a dynamical process with two general types of trajectories, those that result from weak interactions with the selected surface site, giving rise to bulk-type solvation (≈1 ps), and those that have a stronger interaction, enough to define a rigid water structure, with a solvation time of 38 ps, much slower than that of the bulk. At a distance of ≈7 Å from the surface, essentially all trajectories are bulk-type. The theoretical framework for these observations is discussed.

Femtochemistry: Atomic‐Scale Dynamics of the Chemical Bond Using Ultrafast Lasers (Nobel Lecture)

Over many millennia, humankind has thought to explore phenomena on an ever shorter time scale. In this race against time, femtosecond resolution (1 fs=10(-15) s) is the ultimate achievement for studies of the fundamental dynamics of the chemical bond. Observation of the very act that brings about chemistry-the making and breaking of bonds on their actual time and length scales-is the wellspring of the field of femtochemistry, which is the study of molecular motions in the hitherto unobserved ephemeral transition states of physical, chemical, and biological changes. For molecular dynamics, achieving this atomic-scale resolution using ultrafast lasers as strobes is a triumph, just as X-ray and electron diffraction, and, more recently, STM and NMR spectroscopy, provided that resolution for static molecular structures. On the femtosecond time scale, matter wave packets (particle-type) can be created and their coherent evolution as a single-molecule trajectory can be observed. The field began with simple systems of a few atoms and has reached the realm of the very complex in isolated, mesoscopic, and condensed phases, as well as in biological systems such as proteins and DNA structures. It also offers new possibilities for the control of reactivity and for structural femtochemistry and femtobiology. This anthology gives an overview of the development of the field from a personal perspective, encompassing our research at Caltech and focusing on the evolution of techniques, concepts, and new discoveries.Over many millennia, humankind has thought to explore phenomena on an ever shorter time scale. In this race against time, femtosecond resolution (1 fs=10−15 s) is the ultimate achievement for studies of the fundamental dynamics of the chemical bond. Observation of the very act that brings about chemistry—the making and breaking of bonds on their actual time and length scales—is the wellspring of the field of femtochemistry, which is the study of molecular motions in the hitherto unobserved ephemeral transition states of physical, chemical, and biological changes. For molecular dynamics, achieving this atomic-scale resolution using ultrafast lasers as strobes is a triumph, just as X-ray and electron diffraction, and, more recently, STM and NMR spectroscopy, provided that resolution for static molecular structures. On the femtosecond time scale, matter wave packets (particle-type) can be created and their coherent evolution as a single-molecule trajectory can be observed. The field began with simple systems of a few atoms and has reached the realm of the very complex in isolated, mesoscopic, and condensed phases, as well as in biological systems such as proteins and DNA structures. It also offers new possibilities for the control of reactivity and for structural femtochemistry and femtobiology. This anthology gives an overview of the development of the field from a personal perspective, encompassing our research at Caltech and focusing on the evolution of techniques, concepts, and new discoveries.

Photon-induced near-field electron microscopy

In materials science and biology, optical near-field microscopies enable spatial resolutions beyond the diffraction limit, but they cannot provide the atomic-scale imaging capabilities of electron microscopy. Given the nature of interactions between electrons and photons, and considering their connections through nanostructures, it should be possible to achieve imaging of evanescent electromagnetic fields with electron pulses when such fields are resolved in both space (nanometre and below) and time (femtosecond). Here we report the development of photon-induced near-field electron microscopy (PINEM), and the associated phenomena. We show that the precise spatiotemporal overlap of femtosecond single-electron packets with intense optical pulses at a nanostructure (individual carbon nanotube or silver nanowire in this instance) results in the direct absorption of integer multiples of photon quanta (n[planck]ω) by the relativistic electrons accelerated to 200 keV. By energy-filtering only those electrons resulting from this absorption, it is possible to image directly in space the near-field electric field distribution, obtain the temporal behaviour of the field on the femtosecond timescale, and map its spatial polarization dependence. We believe that the observation of the photon-induced near-field effect in ultrafast electron microscopy demonstrates the potential for many applications, including those of direct space-time imaging of localized fields at interfaces and visualization of phenomena related to photonics, plasmonics and nanostructures.

DNA/RNA nucleotides and nucleosides : direct measurement of excited-state lifetimes by femtosecond fluorescence up-conversion

Fluorescence decay times of the nucleosides: adenosine, guanosine, cytidine and thymidine, and of the corresponding nucleotides, were determined using the technique of fluorescence up-conversion with femtosecond time resolution. The excited-state lifetimes of these nucleic acid molecules all fall in the sub-picosecond time scale, confirming the presence of an ultrafast internal conversion channel for both the nucleotides and the nucleosides; the nucleotides lifetimes are longer than those of the nucleosides by up to 20%. The ultrafast internal conversion is biologically relevant to the stability of DNA, and our results support the sub-picosecond repopulation of the ground state, consistent with transient absorption studies on the femtosecond time scale.

Purely rotational coherence effect and time‐resolved sub‐Doppler spectroscopy of large molecules. I. Theoretical

In this and the accompanying paper we present a theoretical treatment and experimental study, respectively, of the phenomenon termed purely rotational coherence. This phenomenon has been demonstrated to be useful as a time domain means by which to obtain high resolution spectroscopic information on excited state rotational levels of large molecules [Felker et al., J. Phys. Chem. 90, 724 (1986); Baskin et al., J. Chem. Phys. 84, 4708 (1986)]. Here, the manifestations in temporally resolved, polarization-analyzed fluorescence of coherently prepared rotational levels in samples of isolated symmetric and asymmetric top molecules are considered. These manifestations, for reasonably large molecules at rotational temperatures characteristic of jet-cooled samples, take the form of polarization-dependent transients and recurrences with temporal widths of the order of tens of picoseconds or less. The transients, which arise from the thermal averaging of many single molecule coherences, are examined with respect to their dependences on molecular parameters (rotational constants, transition dipole directions) and experimental parameters (polarization directions and temperature). A physical picture of rotational coherence as a reflection of the time-dependent orientation of molecules in the sample is developed. And, the influence of rotational coherence in experiments designed to probe intramolecular energy flow is discussed. In the accompanying paper, we present experimental results for jet-cooled t-stilbene and anthracene. For t-stilbene we determine rotational constants for vibrational levels in the S1 electronic state (from the recurrences) and we monitor the trends in rotational coherence vs vibrational coherence as the total energy in the molecule increases.

Water at DNA surfaces: Ultrafast dynamics in minor groove recognition

Water molecules at the surface of DNA are critical to its equilibrium structure, DNA–protein function, and DNA–ligand recognition. Here we report direct probing of the dynamics of hydration, with femtosecond resolution, at the surface of a DNA dodecamer duplex whose native structure remains unperturbed on recognition in minor groove binding with the bisbenzimide drug (Hoechst 33258). By following the temporal evolution of fluorescence, we observed two well separated hydration times, 1.4 and 19 ps, whereas in bulk water the same drug is hydrated with time constants of 0.2 and 1.2 ps. For comparison, we also studied calf thymus DNA for which the hydration exhibits similar time scales to that of dodecamer DNA. However, the time-resolved polarization anisotropy is very different for the two types of DNA and clearly elucidates the rigidity in drug binding and difference in DNA rotational motions. These results demonstrate that hydration at the surface of the groove is a dynamical process with two general types of trajectories; the slowest of them (≈20 ps) are those describing dynamically ordered water. Because of their ultrafast time scale, the “ordered” water molecules are the most weakly bound and are accordingly involved in the entropic (hydration/dehydration) process of recognition.

Real‐time clocking of bimolecular reactions: Application to H+CO2

An experimental methodology is described for the real‐time clocking of elementary bimolecular reactions, i.e., timing the process of formation and decay of the collision complex. The method takes advantage of the propinquity of the potential reagents in a binary van der Waals (vdW) ‘‘precursor’’ molecule. An ultrashort pump laser pulse initiates the reaction, establishing the zero‐of‐time (e.g., by photodissociating one of the component molecules in the vdW precursor, liberating a ‘‘hot’’ atom that attacks the nearby coreagent). A second ultrashort, suitably tuned, variably delayed probe laser pulse detects either the intermediate complex or the newly born product. From an analysis of this temporal data as a function of pump and probe wavelengths, the real‐time dynamics of such a ‘‘van der Waals‐impacted bimolecular (VIB)’’ reaction can be determined. Chosen as a demonstration example is the VIB reaction H+CO2→HOCO‡→HO+CO, using the HI⋅CO2 vdW precursor. The pump laser wavelength was varied over the range...

Femtosecond dynamics of flavoproteins: Charge separation and recombination in riboflavine (vitamin B2)-binding protein and in glucose oxidase enzyme

Flavoproteins can function as hydrophobic sites for vitamin B2 (riboflavin) or, in other structures, with cofactors for catalytic reactions such as glucose oxidation. In this contribution, we report direct observation of charge separation and recombination in two flavoproteins: riboflavin-binding protein and glucose oxidase. With femtosecond resolution, we observed the ultrafast electron transfer from tryptophan(s) to riboflavin in the riboflavin-binding protein, with two reaction times: ≈100 fs (86% component) and 700 fs (14%). The charge recombination was observed to take place in 8 ps, as probed by the decay of the charge-separated state and the recovery of the ground state. The time scale for charge separation and recombination indicates the local structural tightness for the dynamics to occur that fast and with efficiency of more than 99%. In contrast, in glucose oxidase, electron transfer between flavin-adenine-dinucleotide and tryptophan(s)/tyrosine(s) takes much longer times, 1.8 ps (75%) and 10 ps (25%); the corresponding charge recombination occurs on two time scales, 30 ps and nanoseconds, and the efficiency is still more than 97%. The contrast in time scales for the two structurally different proteins (of the same family) correlates with the distinction in function: hydrophobic recognition of the vitamin in the former requires a tightly bound structure (ultrafast dynamics), and oxidation-reduction reactions in the latter prefer the formation of a charge-separated state that lives long enough for chemistry to occur efficiently. Finally, we also studied the influence on the dynamics of protein conformations at different ionic strengths and denaturant concentrations and observed the sharp collapse of the hydrophobic cleft and, in contrast, the gradual change of glucose oxidase.