Alakendra N. Roychoudhury

Microbiological and Geochemical Characterization of Microbial Fe(III) Reduction in Salt Marsh Sediments

Population densities of anaerobic Fe(III)-reducing bacteria (FeRB) and aerobic heterotrophs were inversely correlated in the surficial (0-2 cm) layers of Sapelo Island, Georgia, salt marsh sediments. In surficial sediments where densities of aerobic heterotrophs were low, the density of culturable FeRB correlated positively with the concentration of amorphous Fe(III) oxyhydroxides extractable by ascorbate. High FeRB densities and a decrease with depth of ascorbate-extractable Fe(III) were observed in the upper 6 cm of a tidal creek core. Culturable sulfate-reducing bacteria (SRB) and SRB-targeted rRNA signals were also detected in the upper 6-cm depth. The disappearance of FeRB below 6 cm, however, coincided with a large increase in the abundance of SRB. Thus, when FeRB are not limited by the availability of readily reducible amorphous Fe(III) oxyhydroxides, FeRB may outcompete SRB for growth substrates. Shewanella putrefaciens- and Geobacteraceae-targeted rRNA signals were at or below detection limits in all sediment samples, indicating that these FeRB are not predominant members of the active FeRB populations. The ubiquitous presence of FeRB at the sites studied challenges the traditional view that dissimilatory Fe(III) reduction is not an important pathway of organic carbon oxidation in salt marsh sediments.Population densities of anaerobic Fe(III)-reducing bacteria (FeRB) and aerobic heterotrophs were inversely correlated in the surficial (0-2 cm) layers of Sapelo Island, Georgia, salt marsh sediments. In surficial sediments where densities of aerobic heterotrophs were low, the density of culturable FeRB correlated positively with the concentration of amorphous Fe(III) oxyhydroxides extractable by ascorbate. High FeRB densities and a decrease with depth of ascorbate-extractable Fe(III) were observed in the upper 6 cm of a tidal creek core. Culturable sulfate-reducing bacteria (SRB) and SRB-targeted rRNA signals were also detected in the upper 6-cm depth. The disappearance of FeRB below 6 cm, however, coincided with a large increase in the abundance of SRB. Thus, when FeRB are not limited by the availability of readily reducible amorphous Fe(III) oxyhydroxides, FeRB may outcompete SRB for growth substrates. Shewanella putrefaciens- and Geobacteraceae-targeted rRNA signals were at or below detection limits in...

Chemically and Geographically distinct solid-phase iron pools in the Southern Ocean

Swimming in Iron Pools Because iron is essential for marine phytoplankton growth, its availability limits the primary productivity of the oceans. Iron is typically bioavailable only when present in a dissolved state; however, a large fraction of the total iron in the oceans exists as tiny solid-phase particles ranging in size from a few nanometers to a few micrometers. von der Heyden et al. (p. 1199) used high-resolution x-ray microscopy and spectroscopy to characterize the distribution of iron particles along two transects of the Southern Ocean. Analysis of a number of individual particles reveals strong variation in iron oxidation state, particle mineralogy, and substitution of aluminum for iron—all of which control the solubility, and hence bioavailability, of iron. The distribution and composition of fine-grained marine iron particles vary strongly with location. Iron is a limiting nutrient in many parts of the oceans, including the unproductive regions of the Southern Ocean. Although the dominant fraction of the marine iron pool occurs in the form of solid-phase particles, its chemical speciation and mineralogy are challenging to characterize on a regional scale. We describe a diverse array of iron particles, ranging from 20 to 700 nanometers in diameter, in the waters of the Southern Ocean euphotic zone. Distinct variations in the oxidation state and composition of these iron particles exist between the coasts of South Africa and Antarctica, with different iron pools occurring in different frontal zones. These speciation variations can result in solubility differences that may affect the production of bioavailable dissolved iron.

Sulfate Respiration in Extreme Environments: A Kinetic Study

In situ experiments were conducted in order to quantify sulfate reduction kinetics among thermophilic prokaryotes thriving in hydrothermal springs of Yellowstone National Park (USA). Selected springs were sampled based on their varied physicochemical characteristics in order to identify the effect of extreme environmental determinants over sulfate reduction. Reduction rates range from 1 to 483 nmol cm−3 d−1 in various springs with no correlation observed between sulfate reduction rate and pH or sulfate concentration of spring waters. A weak negative correlation with temperature exists though. Results from slurry incubation experiments show that both the apparent activation energy and the half-saturation constant are site specific. Activation energies of 17, 38, and 119 kJ mol−1 were determined in three different springs whereas the half-saturation constant values of 1.24 ± 0.90 and 3.17 ± 1.02 mM were calculated for two of the sampled springs. Such variations in activity and kinetic parameters may depict a change in the microbial population in different springs, or the response of microbial assemblages to changing physicochemical conditions. In the latter case the sulfate reducers must be highly adaptive to changing environmental conditions.

Reviewing evidence of marine ecosystem change off South Africa

Recent changes have been observed in South African marine ecosystems. The main pressures on these ecosystems are fishing, climate change, pollution, ocean acidification and mining. The best long-term datasets are for trends in fishing pressures but there are many gaps, especially for non-commercial species. Fishing pressures have varied over time, depending on the species being caught. Little information exists for trends in other anthropogenic pressures. Field observations of environmental variables are limited in time and space. Remotely sensed satellite data have improved spatial and temporal coverage but the time-series are still too short to distinguish long-term trends from interannual and decadal variability. There are indications of recent cooling on the West and South coasts and warming on the East Coast over a period of 20–30 years. Oxygen concentrations on the West Coast have decreased over this period. Observed changes in offshore marine communities include southward and eastward changes in species distributions, changes in abundance of species, and probable alterations in foodweb dynamics. Causes of observed changes are difficult to attribute. Full understanding of marine ecosystem change requires ongoing and effective data collection, management and archiving, and coordination in carrying out ecosystem research.

Phosphorus dynamics in shallow eutrophic lakes: an example from Zeekoevlei, South Africa

Zeekoevlei is the largest freshwater lake in South Africa and has been suffering from hyper-eutrophic conditions since last few decades. We have used total P (TP), dissolved phosphate (PO43−), organic P (OP), calcium (Ca) and iron (Fe) bound P fractions to investigate the relevant physical, chemical and biological processes responsible for sedimentation and retention of P and to study phosphorus (P) dynamics in this shallow lake. In addition, redox proxies (V/Cr and Th/U ratios) are used to study the prevailing redox conditions in sediments. Adsorption by CaCO3 and planktonic assimilation of P are found to control P sedimentation in Zeekoevlei. Low concentration of the labile OP fraction in surface sediments restricts the release of P by bacterial remineralisation. Low molar Ca/P and Fe/P ratios indicate low P retention capacity of sediments, and P is most likely released by desorption from wind-induced resuspended sediments and mixing of pore water with the overlying water column.

Dissimilatory sulphate reduction in hypersaline coastal pans: an integrated microbiological and geochemical study.

Here, we report on the spatial and temporal variation in sulphate-reducing bacterial community structure and activity in three hypersaline coastal pans. Community structure was determined using denaturing gradient gel electrophoresis (DGGE). Cluster analysis of DGGE patterns indicated that similar microbial populations were generally found in individual pans but varied from one pan to the other. Sulphate reducing bacteria (SRB) were quantified by competitive polymerase chain reaction based on the amplification of the dsrAB genes. Cell numbers and in situ sulphate reduction activities varied between seasons and pans but in general showed low variation in depth. Sulphate reduction activity was not correlated with microbial population size indicating that community composition is relevant for specific microbial processes. Principal component analysis coupled with correlation analyses suggested that salinity, sulphate concentration, C/N ratio and pH were the most important factors in explaining variations in SRB community composition. Most sequences derived from DGGE amplicons belonged to members of the Desulfobacteraceae and Desulfohalobiaceae families.

Cobalt uptake and resistance to trace metals in Comamonas testosteroni isolated from a heavy-metal contaminated site in the Zambian copperbelt.

A biogeochemical study of a polluted wetland site in Kitwe, Zambia shows high concentration of trace metals (e.g., > 25 and ≈ 2 fold higher than the Eco-toxic threshold values of copper and cobalt, respectively) with many sequestered with the sediment organic phase. Depth profiles in surface sediments suggest trace metal cycling between porewater and solid phases, including that of cobalt. This study documents a bacterium displaying resistance to, and accumulation of cobalt, and that cobalt has a positive effect on growth. The isolate was enriched from the microbial community and identified using 16S rRNA gene sequence analysis as a strain of Comamonas testosteroni (designated C. testosteroni TDKW). Improved growth of C. testosteroni TDKW was seen with the addition of up to 200 μM cobalt (optimal growth ca. 100 μM), while concentrations above 4 mM completely inhibited growth. C. testosteroni TDKW also exhibited resistance to high concentrations of iron and manganese, but showed limited resistance to copper or nickel. Further analysis revealed cellular cobalt accumulation and the presence of heavy-metal resistance genes, tentatively suggesting that this organism could contribute to in situ biological cycling of cobalt in mineral contaminated aquatic systems.

Application, Chemical Interaction and Fate of Iron Minerals in Polluted Sediment and Soils

Due to the high surface reactivity and redox chemistry, iron (Fe) minerals have a strong control on contaminant speciation, mobility and degradation. This has been well established for sediment and solution systems, and this review evaluates the role of Fe minerals in contaminant cycling from a sediment pollution perspective. Sediment redox conditions govern the Fe mineralogy, and a detailed description is given for Fe mineral interactions with contaminants in both oxic and sub/anoxic sediment horizons. These interactions include contaminant immobilisation through adsorption and co-precipitation mechanisms and contaminant degradation and speciation changes caused by Fe redox chemistry. Based on these reductive and adsorptive capabilities, recent advances in Fe amendment technologies, particularly in the field of engineered zero-valent Fe nanoparticles, have shown promising results for the treatment of polluted soils and sediments. However, the variable chemical and physical dynamics of sediment systems remains a limitation to the global application of these technologies.

Investigating nanoscale mineral compositions: Iron L3-edge spectroscopic evaluation of iron oxide and oxy-hydroxide coordination

Abstract The iron (Fe) L2,3-edge X-ray absorption near-edge structure (XANES) spectrum is sensitive to the local coordination environment around the Fe metal center, making it a useful probe for understanding Fe mineral speciation. The two dominant spectral peaks in the Fe L3-edge are parameterized according to the difference in the energy position (ΔeV), and the quotient (intensity ratio) of the two peaks’ maxima. Variations in the ΔeV value are strongly linked to factors that impact on the strength of the ligand field (e.g., Fe valence state, coordination number, and the nature of ligand bonding). The intensity ratio is affected by the strength of the ligand field and by the composition of the resultant molecular orbitals. The Fe valence state also strongly affects the intensity ratio, and an intensity ratio equal to one can be used to distinguish between Fe2+ and Fe3+ minerals. The effects of polyhedral distortion on the magnitudes of ΔeV and intensity ratio values were tested by considering the Fe oxide and -oxy- hydroxide mineral system, in which ligand effects are limited to the differences between the oxygen and hydroxyl ligands. In this system, the distribution of Fe oxide and -oxy-hydroxide minerals on a ΔeV vs. intensity ratio two-parameter plot could be explained by considering the Fe valence state, the ligand chemistry and the site symmetry of the Fe polyhedra. Furthermore, the ΔeV and intensity ratio values were found to be anti-correlated with respect to the various distortion measures considered in this study (e.g., polyhedral volume distortion percentage). This two-parameter plot is thus presented as a standard-less phase-specific identification tool for use in Fe speciation studies, applicable to both natural systems (e.g., aerosols, aquatic colloids) as well as to engineered systems (e.g., nanoparticle synthesis). A major advantage of this technique is that it is applicable to both crystalline and poorly crystalline phases, thus enhancing our ability to study amorphous and nano-crystalline phases that are typically difficult to characterize using X-ray diffraction techniques.