Alan E. Rowan

Mastering molecular matter. Supramolecular architectures by hierarchical self-assembly

Since the serendipitous event that led to the first synthesis of a molecule by the hands of Man in 1826, the creation of molecular matter depended for 150 years on linking together molecules from other molecular building blocks with the help of strong covalent bonds. The advent of supramolecular chemistry in the last decades of the 20th century has provided chemists with a wealth of new possibilities to synthesize molecular structures and materials that are held together by relatively weak, non-covalent interactions, such as hydrogen bonding, π–π stacking, electrostatic and van der Waals interactions. Using nature as a source of inspiration, the creation of even more complex supramolecular architectures has recently become possible by applying the concept of hierarchical self-assembly, i.e. the non-covalent organization of molecules and macromolecules which takes places over distinct multiple levels, in which the assembly processes gradually decrease in strength. This review will focus on some recent discoveries in the field of spontaneous hierarchical organization of synthetic amphiphiles, disk-like molecules and concave building blocks into well-defined nano-sized assemblies.

Helical Molecular Programming

From hexahelices to nanometer-sized fibers: Helical molecular, macromolecular, and supramolecular structures have moved into the forefront of chemical research in the last years. The information that determines the formation and sense of the helical architecture can be incorporated in the constituent molecular building blocks. The combined use of several complimentary helical assembling techniques in a hierarchical process, a method used by nature, will ultimately allow the design and construction of helical architectures such as 1 with a predefined organization and function.

A virus-based single-enzyme nanoreactor

Most enzyme studies are carried out in bulk aqueous solution, at the so-called ensemble level, but more recently studies have appeared in which enzyme activity is measured at the level of a single molecule, revealing previously unseen properties. To this end, enzymes have been chemically or physically anchored to a surface, which is often disadvantageous because it may lead to denaturation. In a natural environment, enzymes are present in a confined reaction space, which inspired us to develop a generic method to carry out single-enzyme experiments in the restricted spatial environment of a virus capsid. We report here the incorporation of individual horseradish peroxidase enzymes in the inner cavity of a virus, and describe single-molecule studies on their enzymatic behaviour. These show that the virus capsid is permeable for substrate and product and that this permeability can be altered by changing pH.

Epoxidation of polybutadiene by a topologically linked catalyst

Nature has evolved complex enzyme architectures that facilitate the synthesis and manipulation of the biopolymers DNA and RNA, including enzymes capable of attaching to the biopolymer substrate and performing several rounds of catalysis before dissociating. Many of these ‘processive’ enzymes have a toroidal shape and completely enclose the biopolymer while moving along its chain, as exemplified by the DNA enzymes T4 DNA polymerase holoenzyme and λ-exonucleoase. The overall architecture of these systems resembles that of rotaxanes, in which a long molecule or polymer is threaded through a macrocycle. Here we describe a rotaxane that mimics the ability of processive enzymes to catalyse multiple rounds of reaction while the polymer substrate stays bound. The catalyst consists of a substrate binding cavity incorporating a manganese(III) porphyrin complex that oxidizes alkenes within the toroid cavity, provided a ligand has been attached to the outer face of the toroid to both activate the porphyrin complex and shield it from being able to oxidize alkenes outside the cavity. We find that when threaded onto a polybutadiene polymer strand, this catalyst epoxidizes the double bonds of the polymer, thereby acting as a simple analogue of the enzyme systems.

Macroscopic Hierarchical Surface Patterning of Porphyrin Trimers via Self-Assembly and Dewetting

The use of bottom-up approaches to construct patterned surfaces for technological applications is appealing, but to date is applicable to only relatively small areas (∼10 square micrometers). We constructed highly periodic patterns at macroscopic length scales, in the range of square millimeters, by combining self-assembly of disk-like porphyrin dyes with physical dewetting phenomena. The patterns consisted of equidistant 5-nanometer-wide lines spaced 0.5 to 1 micrometers apart, forming single porphyrin stacks containing millions of molecules, and were formed spontaneously upon drop-casting a solution of the molecules onto a mica surface. On glass, thicker lines are formed, which can be used to align liquid crystals in large domains of square millimeter size.

Responsive biomimetic networks from polyisocyanopeptide hydrogels

Mechanical responsiveness is essential to all biological systems down to the level of tissues and cells. The intra- and extracellular mechanics of such systems are governed by a series of proteins, such as microtubules, actin, intermediate filaments and collagen. As a general design motif, these proteins self-assemble into helical structures and superstructures that differ in diameter and persistence length to cover the full mechanical spectrum. Gels of cytoskeletal proteins display particular mechanical responses (stress stiffening) that until now have been absent in synthetic polymeric and low-molar-mass gels. Here we present synthetic gels that mimic in nearly all aspects gels prepared from intermediate filaments. They are prepared from polyisocyanopeptides grafted with oligo(ethylene glycol) side chains. These responsive polymers possess a stiff and helical architecture, and show a tunable thermal transition where the chains bundle together to generate transparent gels at extremely low concentrations. Using characterization techniques operating at different length scales (for example, macroscopic rheology, atomic force microscopy and molecular force spectroscopy) combined with an appropriate theoretical network model, we establish the hierarchical relationship between the bulk mechanical properties and the single-molecule parameters. Our results show that to develop artificial cytoskeletal or extracellular matrix mimics, the essential design parameters are not only the molecular stiffness, but also the extent of bundling. In contrast to the peptidic materials, our polyisocyanide polymers are readily modified, giving a starting point for functional biomimetic hydrogels with potentially a wide variety of applications, in particular in the biomedical field.

From simple to supramolecular cytochrome P450 mimics

Cytochrome P450 is one of Nature’s oxidative workhorses and is utilized in a wide variety of roles, one of the most important being the detoxification of foreign bodies within the liver. As a result of its fundamental importance it has been extensively investigated, modeled and mimicked over the past 30 years, and more recently modified and mutated. During this period the complexity, beauty and activity of the biomimetic model systems developed in the laboratory have grown considerably. The synthetic analogues of the cytochrome P450 system have evolved dramatically from simple sterically hindered porphyrin models through to more complex model systems combining cavities such as cyclodextrins and utilizing the interactions between host and guest to generate substrate selectivity and stereoselectivity in product formation. More recently, researchers have tried to combine knowledge obtained from the developing field of supramolecular chemistry and from biochemistry to construct self-assembling systems that contain all the components of the natural system and even utilize molecular oxygen as the oxidant. These systems are successful in that they can achieve turnover numbers comparable to those observed for the natural system. The history of these developments and the current ‘state-of-the-art’ in construction of mimics of the natural enzyme will be presented.

Real-time single-molecule imaging of oxidation catalysis at a liquid-solid interface

Many chemical reactions are catalysed by metal complexes, and insight into their mechanisms is essential for the design of future catalysts. A variety of conventional spectroscopic techniques are available for the study of reaction mechanisms at the ensemble level, and, only recently, fluorescence microscopy techniques have been applied to monitor single chemical reactions carried out on crystal faces and by enzymes. With scanning tunnelling microscopy (STM) it has become possible to obtain, during chemical reactions, spatial information at the atomic level. The majority of these STM studies have been carried out under ultrahigh vacuum, far removed from conditions encountered in laboratory processes. Here we report the single-molecule imaging of oxidation catalysis by monitoring, with STM, individual manganese porphyrin catalysts, in real time, at a liquid-solid interface. It is found that the oxygen atoms from an O2 molecule are bound to adjacent porphyrin catalysts on the surface before their incorporation into an alkene substrate.

Helical poly(isocyanides): past, present and future

Stable helical polymers with a preferred handedness are compounds that offer intriguing characteristics. This review describes the progress in the synthesis of helical polyisocyanides and the investigations to determine their structural properties, such as helical pitch and handedness, by spectroscopic measurements and high resolution AFM. This review is not intended to be comprehensive; its purpose is to highlight recent studies that allow a better understanding of the main aspects of helical polyisocyanides.

Molekulare Programmierung von Helicität

Vom Hexahelicenbis zu nanometergrosen Fasern: Helicale molekulare, makromolekulare und supramolekulare Strukturen uber das Hexahelicen hinaus sind in den letzten Jahren in den Vordergrund der chemischen Forschung geruckt. Viele der Informationen, die die Bildung einer Helix und deren Gangigkeit bestimmen, konnen bereits in den molekularen Bausteinen vorhanden sein. Durch das Zusammenspiel mehrerer komplementarer Methoden zum Aufbau helicaler Strukturen in einem hierarchisch organisierten Prozes, den auch die Natur verwendet, wird es letztlich moglich sein, helicale Architekturen wie 1 mit vorherbestimmbaren Strukturen und Funktionen zu entwerfen und herzustellen.