Alan G. Smith

Sucrose synthase, starch accumulation, and tomato fruit sink strength

Contrasting evidence has accumulated regarding the role of acid invertase and sucrose synthase in tomato fruit sink establishment and maintenance. In this work the relationships among the activities of sucrose synthase and acid invertase, Lycopersicon esculentum Mill cv UC-82B fruit growth, and starch accumulation were analyzed in fruit at 0 to 39 d after anthesis. Sucrose synthase, but not acid invertase, was found to be positively correlated with tomato fruit relative growth rate and with starch content in the pericarp tissue. A similar association between sucrose synthase activity and starch accumulation was also evident in the basal portion of the stem. Heat-shock treatments, which inhibited the increase in sucrose synthase activity at the beginning of the light period and had no effect on acid invertase activity, were used to examine the importance of sucrose synthase in relation to sucrose metabolism and starch synthesis. After the heat-shock treatment, concomitantly with the suppressed sucrose synthase activity relative to the controls, there was a reduction in sucrose cleavage and starch accumulation. These data substantiate the conclusion that, during the early phases of tomato fruit development, sucrose synthase rather than acid invertase is the dominant enzyme in metabolizing imported sucrose, which in turn plays a part in regulating the import of sucrose into the fruit.

Isolation of Tissue-Specific cDNAs from Tomato Pistils.

We have used a differential plaque hybridization screening procedure to isolate cDNA clones for genes that show elevated or exclusive expression in tomato pistils. Clones that showed maximal expression in immature pistils (premeiotic to early meiosis) and mature pistils (at anthesis) were isolated. Of nine clones that were characterized, four were found also to express at some stage of anther development. In situ hybridization experiments showed that expression of the genes we have identified is very tightly regulated both spatially and temporally within the pistil. One gene was identified that is expressed in the pistil only in the transmitting tissue of the style. A second gene was found to express exclusively in two to three cell layers of the ovules for a period of less than eight days.

Cloning and characterization of Tag 1, a tobacco anther β-1,3-glucanase expressed during tetrad dissolution

A critical stage in pollen development is the dissolution of the four products of meiosis, the tetrads, into free microspores. The tetrads are surrounded by a thick callose wall composed of β-1,3-glucan. At the completion of meiosis, the tetrads are released into the anther locule after hydrolysis of the callose by a β-1,3-glucanase. Using the polymerase chain reaction, we have amplified and subsequently cloned a cDNA corresponding to a β-1,3-glucanase, tobacco (Nicotiana tabacum cv. Samsun) anther glucanase (Tag 1), which is expressed exclusively in anthers from meiosis to the free microspore stage of pollen development. The identity of the clone was determined by DNA and deduced protein sequence similarity to other known β-1,3-glucanases. Several regions strictly conserved among four classes of glucanases are also conserved in the Tag 1 protein. Tag 1 represents a novel class of β-1,3-glucanase based on phylogenetic analysis and RNA expression pattern. Tag 1 RNA was detected in situ only in the tapetum, with maximal expression just prior to tetrad dissolution. Due to its expression pattern and sequence similarity to other β-1,3-glucanases, we believe Tag 1 may be involved in tetrad dissolution.

Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes.

BackgroundMeiosis is a critical process in the reproduction and life cycle of flowering plants in which homologous chromosomes pair, synapse, recombine and segregate. Understanding meiosis will not only advance our knowledge of the mechanisms of genetic recombination, but also has substantial applications in crop improvement. Despite the tremendous progress in the past decade in other model organisms (e.g., Saccharomyces cerevisiae and Drosophila melanogaster), the global identification of meiotic genes in flowering plants has remained a challenge due to the lack of efficient methods to collect pure meiocytes for analyzing the temporal and spatial gene expression patterns during meiosis, and for the sensitive identification and quantitation of novel genes.ResultsA high-throughput approach to identify meiosis-specific genes by combining isolated meiocytes, RNA-Seq, bioinformatic and statistical analysis pipelines was developed. By analyzing the studied genes that have a meiosis function, a pipeline for identifying meiosis-specific genes has been defined. More than 1,000 genes that are specifically or preferentially expressed in meiocytes have been identified as candidate meiosis-specific genes. A group of 55 genes that have mitochondrial genome origins and a significant number of transposable element (TE) genes (1,036) were also found to have up-regulated expression levels in meiocytes.ConclusionThese findings advance our understanding of meiotic genes, gene expression and regulation, especially the transcript profiles of MGI genes and TE genes, and provide a framework for functional analysis of genes in meiosis.

Identification and characterization of stamen- and tapetum-specific genes from tomato.

SummaryDifferential screening of a tomato cDNA library produced from pre-anthesis stamens resulted in the isolation of 25 cDNA clones that hybridized to probes made from stamen RNA and showed no hybridization to probes made from RNA of vegetative organs. The 25 clones were found to represent 11 noncross-hybridizing classes. The majority of these clones were derived from genes that were single or low copy in the tomato genome. Northern RNA blotting experiments of vegetative and floral organs at several stages of development demonstrated that expression in all 11 classes was confined to floral organs. Of the 11 classes 9 were found to be expressed exclusively in stamens prior to anthesis. Two classes showed expression in immature stamens and in petals, with one of these two additionally being expressed in mature stamens at anthesis. Clones from three of the classes that were expressed exclusively in stamens were used as probes for in situ localization of RNA in floral organs. These experiments demonstrated that expression of the genes corresponding to these clones was confined to the tapetal cells of the anthers. Expression of one of the three genes was found to be limited to a single cell type during the 5–6 day period from late meiosis to immature pollen formation.

Regulation of a stylar transmitting tissue-specific gene in wild-type and transgenic tomato and tobacco.

SummaryWe have characterized a gene, 9612, that is expressed predominantly in the styles of tomato pistils according to a tightly regulated temporal program. 9612 RNA levels were maximal in mature pistils from flowers at anthesis, with transcripts undetectable in pistils from flowers collected 5–7 days prior to anthesis. In situ localization of mRNA in tissue sections showed that expression of the gene is confined in the pistil to the outer five cell layers of the strands of transmitting tissue within the upper two-thirds of the style. The maximal levels of 9612 RNA detected in anthers and vegetative organs were more than 50-fold and 250-fold lower than the level in pistils, respectively. A homolog to the 9612 gene was detected in tobacco and was also found to be expressed predominantly in the style. The ability of the 5′ flanking region of the tomato gene to appropriately regulate expression of a heterologous coding sequence was examined in transformed tomato and tobacco plants. In contrast to results with previously described regulated genes, the 9612 promoter functions correctly in the pistils of tomato plants, but fails to direct correct expression in tobacco plants. The sequence of the 9612 cDNA includes an open reading frame encoding a polypeptide of 404 amino acids with a highly hydrophobic amino-terminal region that may represent a signal peptide.

Isolation and expression of a host response gene family encoding thaumatin-like proteins in incompatible oat-stem rust fungus interactions.

Four cDNA clones (corresponding to tlp-1, -2, -3, and -4 genes) encoding thaumatin-like (TL), pathogenesis-related proteins were isolated from oat (Avena sativa) infected by an incompatible isolate Pga-1H of the oat stem rust fungus (Puccinia graminis f. sp. avenae). All four cDNA clones contained an open reading frame predicted to encode a 169-amino acid polypeptide with a signal peptide of 21 amino acids at the N-terminus, suggesting that these proteins are transported through a secretory pathway. The amino acid sequences revealed high homology among the four cDNA clones, 80 to 99% identity and 86 to 100% similarity. The tlp genes and several TL protein genes of certain cereals are clustered into a small group that is phylogenetically separate from the major group of TL protein genes of several plant species. In plants infected with the incompatible isolate Pga-1H, or an inappropriate isolate Pgt-8D of P. graminis f. sp. tritici, high levels of tlp gene transcripts accumulated at 42 to 48 h AI and thereafter when hypersensitive host cell death occurred and hyphal growth was inhibited, whereas in plants infected with a compatible isolate Pga-6A, relatively lower amounts of transcripts were detected. Overall, transcript levels were higher with tlp-1 than with the three other genes. Spray with a light mineral oil used as a spore carrier induced transient expression of tlp-1, -2, and -3 genes at 16 to 30 h AI which obscured the initial induction of the tlp genes in response to infection by the pathogens. In contrast, tlp-4 was induced very little by oil spray, so that induction was clearly observed in response to either compatible, incompatible, or inappropriate isolates at 24 to 30 h AI. Wounding leaves by either slicing or puncturing them strongly induced tlp-1 and tlp-3, moderately induced tlp-2, but had no effect on tlp-4. Taken together, the results showed that tlp genes displayed differential responses to oil spray, mechanical wounding, and pathogen infection and that the expression of tlp genes, especially tlp-1, in oat is associated with resistance reactions in response to infection by incompatible and inappropriate isolates of the stem rust fungi.

Differential dihydroflavonol reductase transcription and anthocyanin pigmentation in the juvenile and mature phases of ivy (Hedera helix L.)

Juvenile-phase English ivy (Hedera helix L.) accumulates anthocyanin pigment in the hypodermis of stems and petioles, whereas mature-phase ivy does not. Lamina tissue of both phases of ivy accumulate flavonols, another class of the flavonoids, in response to sucrose and light treatment in vitro. However, juvenile- but not mature-phase lamina tissue accumulates anthocyanin in response to sucrose and light. The lack of anthocyanin accumulation in mature phase tissue is due to a lack of dihydroflavonol reductase (DFR) activity, which catalyzes a reaction late in the anthocyanin biosynthetic pathway. The objective of this work was to determine the level of regulation of gene expression that limits DFR activity in mature phase tissue. There was an induction of DFR transcription and accumulation of DFR mRNA in juvenile-phase lamina tissue treated with sucrose and light. In contrast, transcription and mRNA accumulation of DFR was not detectable in treated mature-phase lamina tissue. The induction of DFR transcription in juvenile tissue required the combination of sucrose and light. There was an induction of transcription of chalcone synthase, which catalyzes the first committed reaction of flavonoid biosynthesis, in both juvenile- and maturephase lamina tissue, indicating that mature-phase tissue is responsive to sucrose and light treatment.

Temporal and Spatial Expression Pattern of Sucrose Synthase during Tomato Fruit Development

Sucrose synthase is proposed to play an important role in the early stages of tomato fruit (Lycopersicon esculentum Mill.) growth. In this work, the temporal and spatial expression patterns of sucrose synthase during tomato fruit development were investigated. Fruit contained the majority of the sucrose synthase protein and mRNA relative to other organs. Only trace levels of sucrose synthase protein and mRNA were detected in the stem, petiole, and roots. Sucrose synthase mRNA was detected in pistils prior to anthesis, reached peak levels in fruit 5 to 7 d after anthesis (DAA), and was not detectable after 35 DAA. Sucrose synthase protein levels reached a maximum at 20 to 25 DAA and then declined to nondetectable levels after 45 DAA. The lack of coordination between protein and mRNA levels suggests that sucrose synthase expression may be controlled at the levels of both transcription and translation. Sucrose synthase mRNA was differentially localized in the fruit, being most abundant in the mesocarp cells adjacent to the placenta, the columella, and the cells surrounding the vascular bundle. Except around the vascular tissue, the localization of sucrose synthase mRNA positively correlates with starch granule accumulation at the cellular level.

Cell and tissue specific expression localized byin situ RNA hybridization in floral tissues

The differentiation of the reproductive organs of plants involves the coordinated expression of many genes. A subset of these genes will have tissue or cell specific expression in different stages of development. The isolation and characterization of these genes is a first step in increasing our understanding of the mechanisms involved in plant differentiation and development. Flower development in Lycopersicon esculentum was selected as a model for these studies, because Lycopersicon esculentum produces abundant moderate sized flowers, is genetically well characterized, and can be transformed (McCormick et al., 1986). Floral c D N A libraries were produced from tomato pistils or anthers at various stages of development. Clones representing floral-specific genes were selected by a series of differential screenings (Charles S. Gasser et al., in preparation). Plaque lifts or Southern blots of cDNA inserts were hybridized with m R N A labeled as c D N A from either entire seedlings or m R N A labeled from the homologous floral tissues. Clones which hybridized to the homolo-