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Dive into the research topics where Alapakkam P. Sampath is active.

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Featured researches published by Alapakkam P. Sampath.


Molecular Therapy | 2011

Virally delivered Channelrhodopsin-2 Safely and Effectively Restores Visual Function in Multiple Mouse Models of Blindness

M. Mehdi Doroudchi; Kenneth P. Greenberg; J. Liu; Kimberly Silka; Edward S. Boyden; Jennifer A. Lockridge; A. Cyrus Arman; Ramesh Janani; Shannon E. Boye; Sanford L. Boye; Gabriel M. Gordon; Benjamin C. Matteo; Alapakkam P. Sampath; William W. Hauswirth; Alan Horsager

Previous work established retinal expression of channelrhodopsin-2 (ChR2), an algal cation channel gated by light, restored physiological and behavioral visual responses in otherwise blind rd1 mice. However, a viable ChR2-based human therapy must meet several key criteria: (i) ChR2 expression must be targeted, robust, and long-term, (ii) ChR2 must provide long-term and continuous therapeutic efficacy, and (iii) both viral vector delivery and ChR2 expression must be safe. Here, we demonstrate the development of a clinically relevant therapy for late stage retinal degeneration using ChR2. We achieved specific and stable expression of ChR2 in ON bipolar cells using a recombinant adeno-associated viral vector (rAAV) packaged in a tyrosine-mutated capsid. Targeted expression led to ChR2-driven electrophysiological ON responses in postsynaptic retinal ganglion cells and significant improvement in visually guided behavior for multiple models of blindness up to 10 months postinjection. Light levels to elicit visually guided behavioral responses were within the physiological range of cone photoreceptors. Finally, chronic ChR2 expression was nontoxic, with transgene biodistribution limited to the eye. No measurable immune or inflammatory response was observed following intraocular vector administration. Together, these data indicate that virally delivered ChR2 can provide a viable and efficacious clinical therapy for photoreceptor disease-related blindness.


The Journal of Physiology | 2002

Measurement of cytoplasmic calcium concentration in the rods of wild-type and transducin knock-out mice

Michael L. Woodruff; Alapakkam P. Sampath; Hugh R. Matthews; N. V. Krasnoperova; Janis Lem; Gordon L. Fain

A 10 μm spot of argon laser light was focused onto the outer segments of intact mouse rods loaded with fluo‐3, fluo‐4 or fluo‐5F, to estimate dark, resting free Ca2+ concentration ([Ca2+]i) and changes in [Ca2+]i upon illumination. Dye concentration was adjusted to preserve the normal physiology of the rod, and the laser intensity was selected to minimise bleaching of the fluorescent dye. Wild‐type mouse rods illuminated continuously with laser light showed a progressive decrease in fluorescence well fitted by two exponentials with mean time constants of 154 and 540 ms. Rods from transducin α‐subunit knock‐out (Trα–/–) animals showed no light‐dependent decline in fluorescence but exhibited an initial rapid component of fluorescence increase which could be fitted with a single exponential (τ∼1–4 ms). This fluorescence increase was triggered by rhodopsin bleaching, since its amplitude was reduced by pre‐exposure to bright bleaching light and its time constant decreased with increasing laser intensity. The rapid component was however unaffected by incorporation of the calcium chelator BAPTA and seemed therefore not to reflect an actual increase in [Ca2+]i. A similar rapid increase in fluorescence was also seen in the rods of wild‐type mice just preceding the fall in fluorescence produced by the light‐dependent decrease in [Ca2+]i. Dissociation constants were measured in vitro for fluo‐3, fluo‐4 and fluo‐5F with and without 1 mm Mg2+ from 20 to 37 °C. All three dyes showed a strong temperature dependence, with the dissociation constant changing by a factor of 3–4 over this range. Values at 37 °C were used to estimate absolute levels of rod [Ca2+]i. All three dyes gave similar values for [Ca2+]i in wild‐type rods of 250 ± 20 nm in darkness and 23 ± 2 nm after exposure to saturating light. There was no significant difference in dark [Ca2+]i between wild‐type and Trα–/– animals.


Nature Neuroscience | 2010

Rod photoreceptors drive circadian photoentrainment across a wide range of light intensities.

Cara M. Altimus; Ali D. Güler; Nazia M. Alam; A. Cyrus Arman; Glen T. Prusky; Alapakkam P. Sampath; Samer Hattar

In mammals, synchronization of the circadian pacemaker in the hypothalamus is achieved through direct input from the eyes conveyed by intrinsically photosensitive retinal ganglion cells (ipRGCs). Circadian photoentrainment can be maintained by rod and cone photoreceptors, but their functional contributions and their retinal circuits that impinge on ipRGCs are not well understood. Using mice that lack functional rods or in which rods are the only functional photoreceptors, we found that rods were solely responsible for photoentrainment at scotopic light intensities. Rods were also capable of driving circadian photoentrainment at photopic intensities at which they were incapable of supporting a visually guided behavior. Using mice in which cone photoreceptors were ablated, we found that rods signal through cones at high light intensities, but not at low light intensities. Thus, rods use two distinct retinal circuits to drive ipRGC function to support circadian photoentrainment across a wide range of light intensities.


The Journal of Neuroscience | 2006

Controlling the gain of rod-mediated signals in the Mammalian retina.

Felice A. Dunn; Thuy Doan; Alapakkam P. Sampath; Fred Rieke

Effective sensory processing requires matching the gain of neural responses to the range of signals encountered. For rod vision, gain controls operate at light levels at which photons arrive rarely at individual rods, light levels too low to cause adaptation in rod phototransduction. Under these conditions, adaptation within a conserved pathway in mammalian retina maintains sensitivity as light levels change. To relate retinal signals to behavioral work on detection at low light levels, we measured how background light affects the gain and noise of primate ganglion cells. To determine where and how gain is controlled, we tracked rod-mediated signals across the mouse retina. These experiments led to three main conclusions: (1) the primary site of adaptation at low light levels is the synapse between rod bipolar and AII amacrine cells; (2) cellular noise after the gain control is nearly independent of background intensity; and (3) at low backgrounds, noise in the circuitry, rather than rod noise or fluctuations in arriving photons, limits ganglion cell sensitivity. This work provides physiological insights into the rich history of experiments characterizing how rod vision avoids saturation as light levels increase.


The Journal of Neuroscience | 2009

Retina-Specific GTPase Accelerator RGS11/Gβ5S/R9AP Is a Constitutive Heterotrimer Selectively Targeted to mGluR6 in ON-Bipolar Neurons

Yan Cao; Ikuo Masuho; Haruhisa Okawa; Keqiang Xie; Junko Asami; Paul J. Kammermeier; Dennis M. Maddox; Takahisa Furukawa; Takayoshi Inoue; Alapakkam P. Sampath; Kirill A. Martemyanov

Members of the R7 family of the regulators of G-protein signaling (R7 RGS) proteins form multi-subunit complexes that play crucial roles in processing the light responses of retinal neurons. The disruption of these complexes has been shown to lead to the loss of temporal resolution in retinal photoreceptors and deficient synaptic transmission to downstream neurons. Despite the well established role of one member of this family, RGS9-1, in controlling vertebrate phototransduction, the roles and organizational principles of other members in the retina are poorly understood. Here we investigate the composition, localization, and function of complexes containing RGS11, the closest homolog of RGS9-1. We find that RGS11 forms a novel obligatory trimeric complex with the short splice isoform of the type 5 G-protein β subunit (Gβ5) and the RGS9 anchor protein (R9AP). The complex is expressed exclusively in the dendritic tips of ON-bipolar cells in which its localization is accomplished through a direct association with mGluR6, the glutamate receptor essential for the ON-bipolar light response. Although association with both R9AP and mGluR6 contributed to the proteolytic stabilization of the complex, postsynaptic targeting of RGS11 was not determined by its membrane anchor R9AP. Electrophysiological recordings of the light response in mouse rod ON-bipolar cells reveal that the genetic elimination of RGS11 has little effect on the deactivation of Gαo in dark-adapted cells or during adaptation to background light. These results suggest that the deactivation of mGluR6 cascade during the light response may require the contribution of multiple GTPase activating proteins.


Proceedings of the National Academy of Sciences of the United States of America | 2010

Flow of energy in the outer retina in darkness and in light

Jonathan D. Linton; Lars C. Holzhausen; Norbert Babai; Hongman Song; Kiyoharu Miyagishima; George W. Stearns; Ken Lindsay; J. Wei; Andrei O. Chertov; Theo A. Peters; Romeo Caffé; Helma Pluk; Mathias W. Seeliger; Naoyuki Tanimoto; Kimberly K. Fong; Laura Bolton; Denise L. T. Kuok; Ian R. Sweet; Theodore M. Bartoletti; Roxana A. Radu; Gabriel H. Travis; Willam N. Zagotta; Ellen Townes-Anderson; Ed Parker; Catharina E.E.M. Van der Zee; Alapakkam P. Sampath; Maxim Sokolov; Wallace B. Thoreson; James B. Hurley

Structural features of neurons create challenges for effective production and distribution of essential metabolic energy. We investigated how metabolic energy is distributed between cellular compartments in photoreceptors. In avascular retinas, aerobic production of energy occurs only in mitochondria that are located centrally within the photoreceptor. Our findings indicate that metabolic energy flows from these central mitochondria as phosphocreatine toward the photoreceptor’s synaptic terminal in darkness. In light, it flows in the opposite direction as ATP toward the outer segment. Consistent with this model, inhibition of creatine kinase in avascular retinas blocks synaptic transmission without influencing outer segment activity. Our findings also reveal how vascularization of neuronal tissue can influence the strategies neurons use for energy management. In vascularized retinas, mitochondria in the synaptic terminals of photoreceptors make neurotransmission less dependent on creatine kinase. Thus, vasculature of the tissue and the intracellular distribution of mitochondria can play key roles in setting the strategy for energy distribution in neurons.


Proceedings of the National Academy of Sciences of the United States of America | 2012

Regulators of G protein signaling RGS7 and RGS11 determine the onset of the light response in ON bipolar neurons

Yan Cao; Johan Pahlberg; Ignacio Sarria; Naomi Kamasawa; Alapakkam P. Sampath; Kirill A. Martemyanov

The time course of signaling via heterotrimeric G proteins is controlled through their activation by G-protein coupled receptors and deactivation through the action of GTPase accelerating proteins (GAPs). Here we identify RGS7 and RGS11 as the key GAPs in the mGluR6 pathway of retinal rod ON bipolar cells that set the sensitivity and time course of light-evoked responses. We showed using electroretinography and single cell recordings that the elimination of RGS7 did not influence dark-adapted light-evoked responses, but the concurrent elimination of RGS11 severely reduced their magnitude and dramatically slowed the onset of the response. In RGS7/RGS11 double-knockout mice, light-evoked responses in rod ON bipolar cells were only observed during persistent activation of rod photoreceptors that saturate rods. These observations are consistent with persistently high G-protein activity in rod ON bipolar cell dendrites caused by the absence of the dominant GAP, biasing TRPM1 channels to the closed state.


The Journal of Neuroscience | 2008

Targeting of RGS7/Gβ5 to the Dendritic Tips of ON-Bipolar Cells Is Independent of Its Association with Membrane Anchor R7BP

Yan Cao; Hongman Song; Haruhisa Okawa; Alapakkam P. Sampath; Maxim Sokolov; Kirill A. Martemyanov

Complexes of regulator of G-protein signaling (RGS) proteins with G-protein β5 (Gβ5) subunits are essential components of signaling pathways that regulate the temporal characteristics of light-evoked responses in vertebrate retinal photoreceptors and ON-bipolar cells. Recent studies have found that RGS/Gβ5 complexes bind to a new family of adapter proteins, R9AP (RGS9 anchor protein) and R7 family binding protein (R7BP), that in case of the RGS9/Gβ5 complex were shown to determine its precise subcellular targeting to either the outer segment of photoreceptors or postsynaptic structures of striatal neurons, respectively. In this study, we establish that another trimeric complex consisting of RGS7, Gβ5, and R7BP subunits is specifically targeted to the dendritic tips of retinal bipolar cells. However, examination of the mechanisms of complex targeting in vivo surprisingly revealed that the delivery of RGS7/Gβ5 to the dendrites of ON-bipolar cells occurs independently of its association with R7BP. These findings provide a new mechanism for adapter-independent targeting of RGS/Gβ5 complexes.


Journal of Neurophysiology | 2012

Dark-adapted response threshold of OFF ganglion cells is not set by OFF bipolar cells in the mouse retina

A. Cyrus Arman; Alapakkam P. Sampath

The nervous system frequently integrates parallel streams of information to encode a broad range of stimulus strengths. In mammalian retina it is generally believed that signals generated by rod and cone photoreceptors converge onto cone bipolar cells prior to reaching the retinal output, the ganglion cells. Near absolute visual threshold a specialized mammalian retinal circuit, the rod bipolar pathway, pools signals from many rods and converges on depolarizing (AII) amacrine cells. However, whether subsequent signal flow to OFF ganglion cells requires OFF cone bipolar cells near visual threshold remains unclear. Glycinergic synapses between AII amacrine cells and OFF cone bipolar cells are believed to relay subsequently rod-driven signals to OFF ganglion cells. However, AII amacrine cells also make glycinergic synapses directly with OFF ganglion cells. To determine the route for signal flow near visual threshold, we measured the effect of the glycine receptor antagonist strychnine on response threshold in fully dark-adapted retinal cells. As shown previously, we found that response threshold for OFF ganglion cells was elevated by strychnine. Surprisingly, strychnine did not elevate response threshold in any subclass of OFF cone bipolar cell. Instead, in every OFF cone bipolar subclass strychnine suppressed tonic glycinergic inhibition without altering response threshold. Consistent with this lack of influence of strychnine, we found that the dominant input to OFF cone bipolar cells in darkness was excitatory and the response threshold of the excitatory input varied by subclass. Thus, in the dark-adapted mouse retina, the high absolute sensitivity of OFF ganglion cells cannot be explained by signal transmission through OFF cone bipolar cells.


The Journal of Physiology | 2010

Optimal processing of photoreceptor signals is required to maximize behavioural sensitivity

Haruhisa Okawa; K. Joshua Miyagishima; A. Cyrus Arman; James B. Hurley; Greg D. Field; Alapakkam P. Sampath

The sensitivity of receptor cells places a fundamental limit upon the sensitivity of sensory systems. For example, the signal‐to‐noise ratio of sensory receptors has been suggested to limit absolute thresholds in the visual and auditory systems. However, the necessity of optimally processing sensory receptor signals for behaviour to approach this limit has received less attention. We investigated the behavioural consequences of increasing the signal‐to‐noise ratio of the rod photoreceptor single‐photon response in a transgenic mouse, the GCAPs−/− knockout. The loss of fast Ca2+ feedback to cGMP synthesis in phototransduction for GCAPs−/− mice increases the magnitude of the rod single‐photon response and dark noise, with the increase in size of the single‐photon response outweighing the increase in noise. Surprisingly, despite the increased rod signal‐to‐noise ratio, behavioural performance for GCAPs−/− mice was diminished near absolute visual threshold. We demonstrate in electrophysiological recordings that the diminished performance compared to wild‐type mice is explained by poorly tuned postsynaptic processing of the rod single‐photon response at the rod bipolar cell. In particular, the level of postsynaptic saturation in GCAPs−/− rod bipolar cells is not sufficient to eliminate rod noise, and degrades the single‐photon response signal‐to‐noise ratio. Thus, it is critical for retinal processing to be optimally tuned near absolute threshold; otherwise the visual system fails to utilize fully the signals present in the rods.

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Johan Pahlberg

University of Southern California

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Haruhisa Okawa

University of Southern California

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Gordon L. Fain

University of California

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Kiyoharu Miyagishima

National Institutes of Health

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Yan Cao

Scripps Research Institute

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A. C. Arman

University of Southern California

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A. Cyrus Arman

University of Southern California

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Ignacio Sarria

Scripps Research Institute

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