Albert Flori

Possible sources of genetic resistance in oil palm (Elaeis guineensis Jacq.) to basal stem rot caused by Ganoderma boninense - prospects for future breeding.

Oil palm estates in southeast Asia suffer from substantial losses due to basal stem rot caused by Ganoderma boninense. Field observations have been carried out in North Sumatra, Indonesia, on a series of planting materials of known origin. Differences in susceptibility to the disease have been detected within the two Elaeis species, guineensis and oleifera. Within Elaeis guineensis, material of Deli origin is highly susceptible compared to material of African origin. It is also possible to detect differences in reaction between parents and between crosses within a given origin. The variability of resistance to basal stem rot within the same cross is also illustrated by the diverse responses of clones derived from palms of the same origin. The prospects opened up by these results are discussed, and the importance of performing an early selection test is highlighted.

Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.).

Key messageGenomic selection empirically appeared valuable for reciprocal recurrent selection in oil palm as it could account for family effects and Mendelian sampling terms, despite small populations and low marker density.AbstractGenomic selection (GS) can increase the genetic gain in plants. In perennial crops, this is expected mainly through shortened breeding cycles and increased selection intensity, which requires sufficient GS accuracy in selection candidates, despite often small training populations. Our objective was to obtain the first empirical estimate of GS accuracy in oil palm (Elaeis guineensis), the major world oil crop. We used two parental populations involved in conventional reciprocal recurrent selection (Deli and Group B) with 131 individuals each, genotyped with 265 SSR. We estimated within-population GS accuracies when predicting breeding values of non-progeny-tested individuals for eight yield traits. We used three methods to sample training sets and five statistical methods to estimate genomic breeding values. The results showed that GS could account for family effects and Mendelian sampling terms in Group B but only for family effects in Deli. Presumably, this difference between populations originated from their contrasting breeding history. The GS accuracy ranged from −0.41 to 0.94 and was positively correlated with the relationship between training and test sets. Training sets optimized with the so-called CDmean criterion gave the highest accuracies, ranging from 0.49 (pulp to fruit ratio in Group B) to 0.94 (fruit weight in Group B). The statistical methods did not affect the accuracy. Finally, Group B could be preselected for progeny tests by applying GS to key yield traits, therefore increasing the selection intensity. Our results should be valuable for breeding programs with small populations, long breeding cycles, or reduced effective size.

Genetic Architecture of Palm Oil Fatty Acid Composition in Cultivated Oil Palm (Elaeis guineensis Jacq.) Compared to Its Wild Relative E. oleifera (H.B.K) Cortés

We searched for quantitative trait loci (QTL) associated with the palm oil fatty acid composition of mature fruits of the oil palm E. guineensis Jacq. in comparison with its wild relative E. oleifera (H.B.K) Cortés. The oil palm cross LM2T x DA10D between two heterozygous parents was considered in our experiment as an intraspecific representative of E. guineensis. Its QTLs were compared to QTLs published for the same traits in an interspecific Elaeis pseudo-backcross used as an indirect representative of E. oleifera. Few correlations were found in E. guineensis between pulp fatty acid proportions and yield traits, allowing for the rather independent selection of both types of traits. Sixteen QTLs affecting palm oil fatty acid proportions and iodine value were identified in oil palm. The phenotypic variation explained by the detected QTLs was low to medium in E. guineensis, ranging between 10% and 36%. The explained cumulative variation was 29% for palmitic acid C16:0 (one QTL), 68% for stearic acid C18:0 (two QTLs), 50% for oleic acid C18:1 (three QTLs), 25% for linoleic acid C18:2 (one QTL), and 40% (two QTLs) for the iodine value. Good marker co-linearity was observed between the intraspecific and interspecific Simple Sequence Repeat (SSR) linkage maps. Specific QTL regions for several traits were found in each mapping population. Our comparative QTL results in both E. guineensis and interspecific materials strongly suggest that, apart from two common QTL zones, there are two specific QTL regions with major effects, which might be one in E. guineensis, the other in E. oleifera, which are independent of each other and harbor QTLs for several traits, indicating either pleiotropic effects or linkage. Using QTL maps connected by highly transferable SSR markers, our study established a good basis to decipher in the future such hypothesis at the Elaeis genus level.

Prediction of oil palm (Elaeis guineensis, Jacq.) agronomic performances using the best linear unbiased predictor (BLUP)

Abstract Reciprocal recurrent selection (RRS) has been adopted for oil palm breeding in Indonesia.Due to a long selection cycle and the large area required, a satisfactory oil palm progeny trial is difficult to conduct.Knowledge of the parental genetic parametersis very important in achieving the expected genetic progress, but the evaluation of these parameters is constrained by highly unbalanced data sets. In this study, the unbalanced agronomic data sets and the pedigree information of an oil palm breeding programme in Indonesia were analysed by using the restricted maximum likelihood (REML) and the best linear unbiased predictor (BLUP)methods. The characters analysed were bunch and oil yields of the adult period (from 7 to 9 years after planting). The coefficients of parentage varied from 0.125 to 0.891 and from zero to 0.750 between parents in the Deli and African groups, respectively.The average coefficients of inbreeding were 0.269 and 0.166 for the parents within the Deli and African groups, respectively. The additive variances of the bunch number, industrial oil-extraction rate and oil yield characters were higher in the parents of the Deli group than those in the African ones. The coefficients of correlation between the predicted and observed hybrids performances varied from 0.55 to 0.64 for oil yield, 0.49 to 0.71 for bunch number, 0.47 to 0.58 for bunch production, 0.48 to 0.64 for industrial oil-extraction rate and 0.42 to 0.56 for plant-height increment. For selection on the basis of oil yield character, BLUPs ability to predict single-cross performance should be sufficient, and will result in a significant contribution to the oil palm seed and clone productions.

Survival of Coelaenomenodera lameensis (Coleoptera: Chrysomelidae) in Relation to the Physical Characteristics of Different Oil Palm (Elaeis sp.) Breeding Populations.

The edibility of different Elaeis sp. breeding populations present in Benin was tested for the leaf miner Coelaenomenodera lameensis Berti (Coleoptera: Chrysomelidae), a major oil palm pest in Africa. Experiments carried out in sleeves revealed the oviposition capacities of females and the mortality rates for the different developmental stages by comparing the populations found on two breeding populations of Elaeis oleifera (HBK) Cortes, four of Elaeis guineensis Jacquin and four (E. guineensis × E. oleifera) × E. guineensis backcrosses. Females laid their eggs similarly on all breeding populations, with a preference for the E. guineensis La Mé origin. The average hatching rate reached 80% for the La Mé origin as opposed to 28% for the Deli origin. The mortality rates for the larval instars were greater on E. oleifera, on certain backcrosses and on the Deli origin of E. guineensis. Development at the second- and third- larval instars was the most affected, with a mortality rate of three to five times greater than that seen on La Mé. Epidermis and cuticle measurements indicated which breeding populations were suitable or unsuitable for the development of C. lameensis. E. guineensis, with its thin epidermis (12 µm) and cuticle (2 µm), proved to be highly susceptible to C. lameensis attacks. On the other hand, E. oleifera, which is very resistant, exhibited a thicker epidermis (17 µm) and cuticle (4 µm). The breeding populations were thus classified according to the positive or negative influence they exerted on the insect’s egg laying and feeding. RÉSUMÉ. La comestibilité de différents matériels végétaux d’Elaeis sp. présents au Bénin est testée pour Coelaenomenodera lameensis Berti (Coleoptera: Chrysomelidae), important ravageur du palmier à huile en Afrique. Des expérimentations en manchons ont permis de déterminer les capacités d’oviposition des femelles et les taux de mortalité des différents stades de développement (œufs, larves, nymphes et adultes) en comparant les populations observées sur deux origines d’Elaeis oleifera (HBK) Cortes, quatre origines d’Elaeis guineensis Jacquin et quatre Backcross (E. guineensis × E. oleifera) × E. guineensis. Les femelles pondent indifféremment sur tous les types de matériel végétal avec une préférence pour l’origine La Mé d’E. guineensis. Le taux moyen d’éclosion atteint 80% pour l’origine La Mé contre 28% pour l’origine Deli. Le taux de mortalité des stades larvaires est plus important sur E. oleifera, sur certains Backcross et sur l’origine Deli d’E. guineensis. Le développement des deuxième et troisième stades larvaires sont les plus affectés avec un taux de mortalité 3 à 5 fois supérieur à celui observé sur La Mé. Des mesures d’épiderme et de cuticule mettent en évidence l’existence de matériel végétal favorable ou défavorable au développement de C. lameensis. E. guineensis dont l’épiderme (12 µm) et la cuticule (2 µm) sont peu épais se révèle être très sensible aux attaques de C. lameensis. Au contraire, E. oleifera présente un épiderme (17 µm) et une cuticule (4 µm) plus épais et est très résistants. Le matériel végétal est ainsi classé suivant l’influence positive ou négative qu’ils exercent sur la ponte et l’alimentation des insectes.