Alessandro Saitta

Global diversity and geography of soil fungi

Introduction The kingdom Fungi is one of the most diverse groups of organisms on Earth, and they are integral ecosystem agents that govern soil carbon cycling, plant nutrition, and pathology. Fungi are widely distributed in all terrestrial ecosystems, but the distribution of species, phyla, and functional groups has been poorly documented. On the basis of 365 global soil samples from natural ecosystems, we determined the main drivers and biogeographic patterns of fungal diversity and community composition. Direct and indirect effects of climatic and edaphic variables on plant and fungal richness. Line thickness corresponds to the relative strength of the relationships between the variables that affect species richness. Dashed lines indicate negative relationships. MAP, mean annual precipitation; Fire, time since last fire; Dist. equator, distance from the equator; Ca, soil calcium concentration; P, soil phosphorus concentration; pH, soil pH. Rationale We identified soil-inhabiting fungi using 454 Life Sciences (Branford, CN) pyrosequencing and through comparison against taxonomically and functionally annotated sequence databases. Multiple regression models were used to disentangle the roles of climatic, spatial, edaphic, and floristic parameters on fungal diversity and community composition. Structural equation models were used to determine the direct and indirect effects of climate on fungal diversity, soil chemistry, and vegetation. We also examined whether fungal biogeographic patterns matched paradigms derived from plants and animals—namely, that species’ latitudinal ranges increase toward the poles (Rapoport’s rule) and diversity increases toward the equator. Last, we sought group-specific global biogeographic links among major biogeographic regions and biomes using a network approach and area-based clustering. Results Metabarcoding analysis of global soils revealed fungal richness estimates approaching the number of species recorded to date. Distance from equator and mean annual precipitation had the strongest effects on richness of fungi, including most fungal taxonomic and functional groups. Diversity of most fungal groups peaked in tropical ecosystems, but ectomycorrhizal fungi and several fungal classes were most diverse in temperate or boreal ecosystems, and many fungal groups exhibited distinct preferences for specific edaphic conditions (such as pH, calcium, or phosphorus). Consistent with Rapoport’s rule, the geographic range of fungal taxa increased toward the poles. Fungal endemicity was particularly strong in tropical regions, but multiple fungal taxa had cosmopolitan distribution. Conclusions Climatic factors, followed by edaphic and spatial patterning, are the best predictors of soil fungal richness and community composition at the global scale. Richness of all fungi and functional groups is causally unrelated to plant diversity, with the exception of ectomycorrhizal root symbionts, suggesting that plant-soil feedbacks do not influence the diversity of soil fungi at the global scale. The plant-to-fungi richness ratio declined exponentially toward the poles, indicating that current predictions—assuming globally constant ratios—overestimate fungal richness by 1.5- to 2.5-fold. Fungi follow similar biogeographic patterns as plants and animals, with the exception of several major taxonomic and functional groups that run counter to overall patterns. Strong biogeographic links among distant continents reflect relatively efficient long-distance dispersal compared with macro-organisms. Fungi play major roles in ecosystem processes, but the determinants of fungal diversity and biogeographic patterns remain poorly understood. Using DNA metabarcoding data from hundreds of globally distributed soil samples, we demonstrate that fungal richness is decoupled from plant diversity. The plant-to-fungus richness ratio declines exponentially toward the poles. Climatic factors, followed by edaphic and spatial variables, constitute the best predictors of fungal richness and community composition at the global scale. Fungi show similar latitudinal diversity gradients to other organisms, with several notable exceptions. These findings advance our understanding of global fungal diversity patterns and permit integration of fungi into a general macroecological framework. Global metagenomics detects hotspots of fungal diversity and macroecological patterns and indicates that plant and fungal diversity are uncoupled. [Also see Perspective by Wardle and Lindahl] Assessing fungal diversity worldwide Fungi are hyperdiverse but poorly known, despite their ecological and economic impacts. Tedersoo et al. collected nearly 15,000 topsoil samples from 365 sites worldwide and sequenced their genomes (see the Perspective by Wardle and Lindahl). Overall, they found a striking decline in fungal species richness with distance from the equator. For some specialist groups though, diversity depended more on the abundance of host plants than host diversity or geography. The findings reveal a huge gap between known and described species and the actual numbers of distinct fungi in the worlds soils. Science, this issue 10.1126/science.1256688; see also p. 1052

Interactions of fungi with other organisms

Living organisms establish complex networks of mutualistic and antagonistic interactions in nature, which impact strongly on their own survival and on the stability of the whole population. Fungi, in particular, can shape natural as well as man-managed ecosystems due to their ubiquitous occurrence and the range of interactions they establish with plants, animals and other microbes. This review describes some examples of mutualistic and antagonistic fungal interactions that are of particular interest for their ecological role, or because they can be exploited by man to improve plant health and/or productivity in sustainable agriculture and forestry.

Anti-Acne Activity of Italian Medicinal Plants Used for Skin Infection.

Propionibacterium acnes is implicated in the pathogenesis of acne vulgaris, which impacts >85% of teenagers. Novel therapies are in high demand and an ethnopharmacological approach to discovering new plant sources of anti-acne therapeutics could contribute to filling this void in effective therapies. The aims of our study were two-fold: (1) To determine if species identified in ethnopharmacological field studies as having traditional uses for skin and soft tissue infection (SSTI) exhibit significantly more activity against P. acnes than species with no such reported use; and (2) Chemically characterize active extracts and assess their suitability for future investigation. Extracts of Italian medicinal (for acne and other skin infection) and randomly collected plants and fungi were screened for growth-inhibitory and anti-biofilm activity in P. acnes using broth microdilution methods. Bioactive extracts were chemically characterized by HPLC and examined for cytotoxicity against human keratinocytes (HaCaTs). Following evaluation of 157 extracts from 10 fungi and 58 plants, we identified crude extracts from seven species exhibiting growth inhibitory activity (MICs 64–256 μg mL−1). All active extracts were examined for cytotoxicity against HaCaTs; extracts from one fungal and one plant species were toxic (IC50 256 μg mL−1). HPLC analysis with chemical standards revealed many of these extracts contained chlorogenic acid, p-coumaric acid, ellagic acid, gallic acid, and tannic acid. In conclusion, species used in traditional medicine for the skin exhibited significantly greater (p < 0.05) growth inhibitory and biofilm eradication activity than random species, supporting the validity of an ethnobotanical approach to identifying new therapeutics. The anti-acne activity of three extracts is reported for the first time: Vitis vinifera leaves, Asphodelus microcarpus leaves, and Vicia sativa aerial parts.

Biodiversity of wood-decay fungi in Italy

Abstract Current knowledge about Italian wood-decay fungi (Basidiomycota and Ascomycota) is surveyed: 1582 taxa belonging to Ascomycota (341) and Basidiomycota (1241) have been reported, including 23 species new to science of Basidiomycota described from Italy within the last five years. Evaluating diversity of wood-decay fungi can provide a more accurate estimation of species richness for fungi which are an important functional component of ecosystems. Aphyllophoroid and Ascomycota species play an important role in habitat conservation and management. Sardinia, Sicily, the Alps and the Apennines are “hot spots” for wood-decay Basidiomycota in Italy.

New records of corticioid fungi from Sicily

This paper is the result of an on-going study on distribution and ecology of corticioid wood-inhabiting fungi in Sicily. Twenty-five species not previously recorded in Sicily are here listed. For each taxon, ecological and distributional data are provided. Subulicystidium perlongisporum was recorded in Italy for the first time in two localities occurring on Quercus ilex L. wood. Description, distributional and ecological data of this rare taxon are also provided. Dendrophora versiformis and Kavinia alboviridis, considered rare species in Italy and Europe, are included in this report.

Macrofungi in Mediterranean maquis along seashore and altitudinal transects

In semi-arid Mediterranean environments, fungal activity is fundamental for buffering biotic and abiotic stress to the plant and for sustaining a vegetation cover. Despite the important role that fungi play in habitats stability, mycological data from Mediterranean ecosystems are scarce and fragmentary. We investigated fungal diversity in several areas characterized by Mediterranean maquis, from continental Italy, Sicily, and Greece in order to contribute to the analysis of distribution, ecology, and diversity of macrofungi in evergreen sclerophyllous shrublands at different elevation and distance from the seashore across the Mediterranean Basin. Several fungal taxa that are remarkable due to their ecology, rarity, and limited geographical distribution were recovered. Among them, the ectomycorrhizal species Amanita dunensis and A. valens were recorded for the first time in Italy. The wood-inhabiting macrofungi, Aleurodiscus dextrinoideocerussatus, Peniophorella tsugae, Perenniporia meridionalis, Phanerochaete martelliana, Vararia ochroleuca, and six Peniophora species were reported for the first time in Greece. Some species, such as Gloeodontia columbiensis, Ceriporia aurantiocarnescens, Peniophora pithya, and P. tamaricicola were collected on new substrates. For the two rare basidiomycetes Amanita eliae and Battarrea phalloides, molecular identification and phylogenetic analysis gave valuable information on their relationship with similar taxa.

Building the jigsaw puzzle of the critically endangered Pleurotus nebrodensis: historical collection sites and an emended description

Historical collection sites of the critically endangered Pleurotus nebrodensis were retraced in Sicily (southern Italy) using recently rediscovered documents and through interviews with local people. These localities were visited in 2009 and checked for the presence of this rare mushroom, confirming a continuing decline in fruiting. An emended description of the taxon is provided based on observations on abundant recently collected material. The need for more incisive action to safeguard this valuable mushroom by the University of Palermo, Regional Park of Madonie Administration and policy makers is emphasized.

First record of Eichleriella leucophaea ( Basidiomycota ) from Italy

Eichleriella leucophaea Bres., a wood inhabiting heterobasidiomycete, is recorded for the first time in Italy. Fruiting body occurred on branch of Quercus ilex L. Description, distributional and ecological data of this uncommon taxon are here provided.

Two Rare Northern Entoloma Species Observed in Sicily under Exceptionally Cold Weather Conditions

The biology and ecology of many Entoloma species is still poorly known as well as their geographical distribution. In Italy, there are no studies on the influence of weather on fungal abundance and richness and our knowledge on the ecology and distribution of Entoloma species needs to be improved. The discovery of two Entoloma species in Sicily (southern Italy), reported in the literature as belonging to the habitat of north European countries, was the basis leading to the assumption that anomalous climatic conditions could stimulate the growth of northern entolomas in the southernmost Mediterranean regions. The results of this study show that the presence of northern Entoloma species in Sicily is not influenced by the Mediterranean type of vegetation, by edaphic or altitudinal factors but by anomalous climatic trends of precipitations and temperatures which stimulate the fructification of basidiomata in correspondence with a thermal shock during autumn.

Tree species identity and diversity drive fungal richness and community composition along an elevational gradient in a Mediterranean ecosystem

Ecological and taxonomic knowledge is important for conservation and utilization of biodiversity. Biodiversity and ecology of fungi in Mediterranean ecosystems is poorly understood. Here, we examined the diversity and spatial distribution of fungi along an elevational gradient in a Mediterranean ecosystem, using DNA metabarcoding. This study provides novel information about diversity of all ecological and taxonomic groups of fungi along an elevational gradient in a Mediterranean ecosystem. Our analyses revealed that among all biotic and abiotic variables tested, host species identity is the main driver of the fungal richness and fungal community composition. Fungal richness was strongly associated with tree richness and peaked in Quercus-dominated habitats and Cistus-dominated habitats. The highest taxonomic richness of ectomycorrhizal fungi was observed under Quercus ilex, whereas the highest taxonomic richness of saprotrophs was found under Pinus. Our results suggest that the effect of plant diversity on fungal richness and community composition may override that of abiotic variables across environmental gradients.