Alex Cardoso Bastos

Rhodolith Beds Are Major CaCO3 Bio-Factories in the Tropical South West Atlantic

Rhodoliths are nodules of non-geniculate coralline algae that occur in shallow waters (<150 m depth) subjected to episodic disturbance. Rhodolith beds stand with kelp beds, seagrass meadows, and coralline algal reefs as one of the worlds four largest macrophyte-dominated benthic communities. Geographic distribution of rhodolith beds is discontinuous, with large concentrations off Japan, Australia and the Gulf of California, as well as in the Mediterranean, North Atlantic, eastern Caribbean and Brazil. Although there are major gaps in terms of seabed habitat mapping, the largest rhodolith beds are purported to occur off Brazil, where these communities are recorded across a wide latitudinal range (2°N - 27°S). To quantify their extent, we carried out an inter-reefal seabed habitat survey on the Abrolhos Shelf (16°50′ - 19°45′S) off eastern Brazil, and confirmed the most expansive and contiguous rhodolith bed in the world, covering about 20,900 km2. Distribution, extent, composition and structure of this bed were assessed with side scan sonar, remotely operated vehicles, and SCUBA. The mean rate of CaCO3 production was estimated from in situ growth assays at 1.07 kg m−2 yr−1, with a total production rate of 0.025 Gt yr−1, comparable to those of the worlds largest biogenic CaCO3 deposits. These gigantic rhodolith beds, of areal extent equivalent to the Great Barrier Reef, Australia, are a critical, yet poorly understood component of the tropical South Atlantic Ocean. Based on the relatively high vulnerability of coralline algae to ocean acidification, these beds are likely to experience a profound restructuring in the coming decades.

Neotropical forest expansion during the last glacial period challenges refuge hypothesis

Significance The tropical forests of South America are among the most diverse and unique habitats in the world in terms of plant and animal species. One of the most popular explanations for this diversity and endemism is the idea that forests retracted and fragmented during glacial periods, forming ecological refuges, surrounded by dry lands or savannas. These historically stable forest refuges would have been responsible for maintaining the pattern of diversity and endemism observed today. Here, we show that the Atlantic Forest of eastern South America probably expanded, rather than contracted, during the last glacial period. In addition, the emerged Brazilian continental shelf played a major, yet neglected, role on the evolution of this biodiversity hotspot during the last glacial period. The forest refuge hypothesis (FRH) has long been a paradigm for explaining the extreme biological diversity of tropical forests. According to this hypothesis, forest retraction and fragmentation during glacial periods would have promoted reproductive isolation and consequently speciation in forest patches (ecological refuges) surrounded by open habitats. The recent use of paleoclimatic models of species and habitat distributions revitalized the FRH, not by considering refuges as the main drivers of allopatric speciation, but instead by suggesting that high contemporary diversity is associated with historically stable forest areas. However, the role of the emerged continental shelf on the Atlantic Forest biodiversity hotspot of eastern South America during glacial periods has been ignored in the literature. Here, we combined results of species distribution models with coalescent simulations based on DNA sequences to explore the congruence between scenarios of forest dynamics through time and the genetic structure of mammal species cooccurring in the central region of the Atlantic Forest. Contrary to the FRH predictions, we found more fragmentation of suitable habitats during the last interglacial (LIG) and the present than in the last glacial maximum (LGM), probably due to topography. We also detected expansion of suitable climatic conditions onto the emerged continental shelf during the LGM, which would have allowed forests and forest-adapted species to expand. The interplay of sea level and land distribution must have been crucial in the biogeographic history of the Atlantic Forest, and forest refuges played only a minor role, if any, in this biodiversity hotspot during glacial periods.

An extensive reef system at the Amazon River mouth

A novel Amazonian reef biome was discovered, encompassing large rhodolith and sponge beds under low light, low oxygen, and high POC. Large rivers create major gaps in reef distribution along tropical shelves. The Amazon River represents 20% of the global riverine discharge to the ocean, generating up to a 1.3 × 106–km2 plume, and extensive muddy bottoms in the equatorial margin of South America. As a result, a wide area of the tropical North Atlantic is heavily affected in terms of salinity, pH, light penetration, and sedimentation. Such unfavorable conditions were thought to imprint a major gap in Western Atlantic reefs. We present an extensive carbonate system off the Amazon mouth, underneath the river plume. Significant carbonate sedimentation occurred during lowstand sea level, and still occurs in the outer shelf, resulting in complex hard-bottom topography. A permanent near-bottom wedge of ocean water, together with the seasonal nature of the plume’s eastward retroflection, conditions the existence of this extensive (~9500 km2) hard-bottom mosaic. The Amazon reefs transition from accretive to erosional structures and encompass extensive rhodolith beds. Carbonate structures function as a connectivity corridor for wide depth–ranging reef-associated species, being heavily colonized by large sponges and other structure-forming filter feeders that dwell under low light and high levels of particulates. The oxycline between the plume and subplume is associated with chemoautotrophic and anaerobic microbial metabolisms. The system described here provides several insights about the responses of tropical reefs to suboptimal and marginal reef-building conditions, which are accelerating worldwide due to global changes.

Extensive Rhodolith Beds Cover the Summits of Southwestern Atlantic Ocean Seamounts

Abstract PEREIRA-FILHO, G.H.; AMADO-FILHO, G.M.; MOURA, R.L.; BASTOS, A.C.; GUIMARÃES, S.M.P.B.; SALGADO, L.T.; FRANCINI-FILHO, R.B.; BAHIA, R.G.; ABRANTES, D.P.; GUTH, A.Z., and BRASILEIRO, P.S., 2012. Extensive rhodolith beds cover the summits of southwestern Atlantic Ocean seamounts. Calcium carbonate production by marine organisms is an essential process in the global budget of , and coralline reefs are the most important benthic carbonate producers. Crustose coralline algae (CCA) are well recognized as the most important carbonate builders in the tropical Brazilian continental shelf, forming structural reefs and extensive rhodolith beds. However, the distribution of CCA beds, as well as their role in mineralization in mesophotic communities and isolated carbonate banks, is still poorly known. To characterize the bottom features of several seamount summits in the Southwestern Atlantic (SWA), side-scan sonar records, remotely operated vehicle imagery, and benthic samples with mixed-gas scuba diving were acquired during two recent research cruises (March 2009 and February 2011). The tops of several seamounts within this region are relatively shallow (∼60 m), flat, and dominated by rhodolith beds (Vitória, Almirante Saldanha, Davis, and Jaseur seamounts, as well as the Trindade Island shelf). On the basis of abundance, dimensions, vitality, and growth rates of CCA nodules, a mean CaCO3 production was estimated, ranging from 0.4 to 1.8 kg m−2 y−1, with a total production reaching 1.5 × 10−3 Gt y−1. Our results indicate that these SWA seamount summits provide extensive areas of shallow reef area and represent 0.3% of the worlds carbonate banks. The importance of this habitat has been highly neglected, and immediate management needs must be fulfilled in the short term to ensure long-term persistence of the ecosystem services provided by these offshore carbonate realms.

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data

Seamounts are considered important sources of biodiversity and minerals. However, their biodiversity and health status are not well understood; therefore, potential conservation problems are unknown. The mesophotic reefs of the Vitória-Trindade Seamount Chain (VTC) were investigated via benthic community and fish surveys, metagenomic and water chemistry analyses, and water microbial abundance estimations. The VTC is a mosaic of reef systems and includes fleshy algae dominated rhodolith beds, crustose coralline algae (CCA) reefs, and turf algae dominated rocky reefs of varying health levels. Macro-carnivores and larger fish presented higher biomass at the CCA reefs (4.4 kg per frame) than in the rhodolith beds and rocky reefs (0.0 to 0.1 kg per frame). A larger number of metagenomic sequences identified as primary producers (e.g., Chlorophyta and Streptophyta) were found at the CCA reefs. However, the rocky reefs contained more diseased corals (>90%) than the CCA reefs (~40%) and rhodolith beds (~10%). Metagenomic analyses indicated a heterotrophic and fast-growing microbiome in rocky reef corals that may possibly lead to unhealthy conditions possibly enhanced by environmental features (e.g. light stress and high loads of labile dissolved organic carbon). VTC mounts represent important hotspots of biodiversity that deserve further conservation actions.

Mid- to Late-Holocene estuarine infilling processes studied by radiocarbon dates, high resolution seismic and biofacies at Vitoria Bay, Espirito Santo, Southeastern Brazil

Vitoria Bay is a 20 km long estuary, morphologically narrow, with a microtidal regime and, as other modern estuaries, was formed during the last post-glacial transgression. The estuarine bed morphology is characterised by a main natural channel limited by tidal flats with developed mangroves. Original radiocarbon dates were obtained for the site. Five radiocarbon ages ranging from 1,010 to 7,240 years BP were obtained from two sedimentary cores, which represent a 5 m thick stratigraphic sequence. The results indicate that, until about 4,000 cal. yrs BP, environmental conditions in Vitoria Bay were still of an open bay, with a free and wide connection with marine waters. During the last 4,000 yrs, the bay has experienced a major regression phase, by becoming more restricted in terms of seawater circulation and probably increasing tidal energy. Three main stratigraphic surfaces were recognised, which limit trangressive, trangressive/highstand and regressive facies. The present channel morphology represents a tidal scouring surface or a tidal diastem, which erodes and truncates regressive facies bedding. Foraminiferal biofacies, which change from marine to brackish and mangrove tidal-flat environments, support the seismic stratigraphic interpretation. Absence of mangrove biofacies at one of the two cores is also an indication of modern tidal ravinement.

Morfologia e distribuição sedimentar em um sistema estuarino tropical: Baía de Vitória, ES

Vitoria Bay is an estuarine system along the eastern Brazilian coast that presents great economic importance and unique characteristics. The present study focused on describing the morphology, sedimentary distribution and sonographic patterns along the bay in order to recognize the prevailing sedimentary processes acting along the estuary. An integrated analysis allowed the recognition of four regions associated with distinct processes: the upper estuary is dominated by fluvial input and estuarine processes; a large portion of the central region of the system showed erosive characteristics and morphological adaptations related to the increase in currents caused by the man-induced narrowing of the bay, providing the formation of bedforms; the navigation channel, which shows high rates of sedimentation and is clearly modified by dredging and the estuarine mouth which is dominated by marine processes.

Occurrence of storm-generated bedforms along the inner continental shelf - Southeastern Brazil

Levantamentos sonograficos desenvolvidos em duas areas da plataforma interna adjacente ao estado do Espirito Santo revelam formas de fundo cuja origem e fortemente relacionada a eventos de tempestades. Estas sao caracterizadas por alternâncias de bandas de areias finas sobrepostas, de forma alternada, a um fundo de areias grossas, gerando manchas de areias grossas intercaladas abruptamente com faixas de areias finas a profundidades de 25-30 m para GUA e de 05-08 m para BES. Em ambas as areas as faixas de areias grossas apresentam marcas de ondulacao geradas por ondas com orientacao levemente paralela a linha de costa. A sedimentologia de GUA e composta por areias finas a muito finas lamosas carbonaticas com cascalhos siliciclasticos e a de BES por areias grossas e medias com cascalhos biodetriticos. Desta forma, e clara a acao de correntes/ondas de tempestade no fundo marinho de GUA e de BES; porem, a classificacao quanto ao comportamento hidrodinâmico e ao transporte de sedimento e necessaria para as estimativas sobre a formacao, transporte e manutencao das feicoes encontradas.

The Influence of Articulated and Disarticulated Cockle Shells on the Erosion of a Cohesive Bed

Abstract An annular flume (Lab Carousel) was used to investigate the influence of shells on the erosion rates of an artificial laboratory cohesive bed (potters clay) under unidirectional flow. Specimens of articulated and disarticulated cockle shells (Cerastoderma edule), separated into six size classes (of maximum diameter from 13 to 26 mm), were used. The fluid-transmitted shear stresses and shell-induced bed erosion for the six classes were measured in triplicate, as well as shell settling velocity, sedimentation diameter, and shell drag coefficient. Bed erosion began after the shells started to move: erosion rates were influenced by shell size and the mode of transport. Two different modes of shell transport were observed: (i) rolling and saltation of articulated shells, and (ii) sliding and saltation of disarticulated shells. Peak bed erosion rates were associated with rolling and sliding modes of transport. Higher values of the solid-transmitted shear stress were calculated for saltating shells (in some cases two times higher), but contact with the bed was less frequent than rolling or sliding. The presence of cockle shells in an environment with hydrodynamic conditions strong enough to induce shell transport could significantly increase the loss of mass (erosion) of the surface bed or cliff. At Hythe intertidal area, where the shell specimens were collected, the presence of miniature furrows containing shells deposits in the troughs is widespread, and the troughs and walls show tool marks indicating shell abrasion.

BaMBa: towards the integrated management of Brazilian marine environmental data

A new open access database, Brazilian Marine Biodiversity (BaMBa) (https://marinebiodiversity.lncc.br), was developed in order to maintain large datasets from the Brazilian marine environment. Essentially, any environmental information can be added to BaMBa. Certified datasets obtained from integrated holistic studies, comprising physical–chemical parameters, -omics, microbiology, benthic and fish surveys can be deposited in the new database, enabling scientific, industrial and governmental policies and actions to be undertaken on marine resources. There is a significant number of databases, however BaMBa is the only integrated database resource both supported by a government initiative and exclusive for marine data. BaMBa is linked to the Information System on Brazilian Biodiversity (SiBBr, http://www.sibbr.gov.br/) and will offer opportunities for improved governance of marine resources and scientists’ integration. Database URL: http://marinebiodiversity.lncc.br