Alex I. Smirnov

Molecular distances from dipolar coupled spin-labels: the global analysis of multifrequency continuous wave electron paramagnetic resonance data.

For immobilized nitroxide spin-labels with a well-defined interprobe geometry, resolved dipolar splittings can be observed in continuous wave electron paramagnetic resonance (CW-EPR) spectra for interelectron distances as large as 30 A using perdeuterated probes. In this work, algorithms are developed for calculating CW-EPR spectra of immobilized, dipolar coupled nitroxides, and then used to define the limits of sensitivity to the interelectron distance as a function of geometry and microwave frequency. Secondly, the CW-EPR spectra of N epsilon-spin-labeled coenzyme NAD+ bound to microcrystalline, tetrameric glyceraldehyde-3-phosphate dehydrogenase (GAPDH) have been collected at 9.8, 34, and 94 GHz. These data have been analyzed, using a combination of simulated annealing and global analysis, to obtain a unique fit to the data. The values of the intermitroxide distance and the five angles defining the relative orientation of the two nitroxides are in reasonable agreement with a molecular model built from the known crystal structure. Finally, the effect of rigid body isotropic rotational diffusion on the CW-EPR spectra of dipolar coupled nitroxides has been investigated using an algorithm based on Brownian dynamics trajectories. These calculations demonstrate the sensitivity of CW-EPR spectra to dipolar coupling in the presence of rigid body rotational diffusion.

Reversible room temperature ferromagnetism in undoped zinc oxide: Correlation between defects and physical properties

We report a systematic study of the structural, chemical, electrical, optical, and magnetic properties of undoped ZnO thin films grown under different conditions as well as the films that were annealed in various environments. Oxygen-annealed films displayed a sequential transition from ferromagnetism to diamagnetism as a function of the annealing temperature. An increase in the green band intensity has been observed in oxygen-annealed ZnO films. Reversible switching of room-temperature ferromagnetism and n-type conductivity have been demonstrated by oxygen and vacuum annealing. Electron paramagnetic resonance data were found to be in agreement with the results of magnetization and conductivity measurements. Possibility of external ferromagnetic impurity as the origin of the unconventional room temperature ferromagnetism in these films has been ruled out by secondary ion mass spectrometer and electron energy loss spectroscopy studies. Correlation between structural, electrical, optical, and magnetic prope...

The Use of EPR for the Measurement of the Concentration of Oxygen in Vivo in Tissues under Physiologically Pertinent Conditions and Concentrations

The aim of this paper is to describe an emerging methodology which appears to offer new capabilities for the measurement of the concentration of oxygen ([O2]) in complex biological systems in vitro and in vivo with the sensitivity and accuracy needed to make these measurements under conditions that are pertinent for physiological and pathological processes. The method uses electron paramagnetic resonance (EPR or, equivalently, ESR); the approach is often termed EPR oximetry. In particular EPR oximetry can make measurements selectively in the intracellular compartment and in tissues in vivo and can detect [O2] as low as 0.1 micromolar. Our use of EPR to measure intracellular [O2] with nitroxides has been described previously (1–2) and therefore this paper will concentrate on the methodology to make measurements in vivo and also, at very low [O2]. We will review the basis of the methodology briefly but will emphasize results in tissues which illustrate the capabilities of this new technique. Because of the newness of this approach the results obtained so far have been aimed at determining and illustrating the potential of this technique, rather than providing detailed information on a specific biological problem. A companion paper illustrates a more detailed application of the new technology, the measurement of [O2] in skeletal muscle (3).

Electron paramagnetic resonance W-band spectrometer with a low-noise amplifier

The Mark II W-band (94 GHz) EPR spectrometer with a low-noise millimeter-wave amplifier is described. The microwave bridge is of a high-sensitivity homodyne design. Signal-to-noise ratios were measured for a number of detectors with and without the low-noise amplifier. The signal-to-noise ratio was determined not only by the type of detector but also how well it was matched. Without a microwave preamplifier, a hot-electron bolometer provides the best signal-to-noise ratio. Addition of a low-noise microwave preamplifier to the CW homodyne bridge gives a 10 dB improvement in the noise figure of the receiver at a modulation frequency of 100 kHz. A greater improvement in the signal-to-noise ratio is seen at low modulation frequencies (1–10 kHz), making the low-noise amplifier useful for systems with large linewidths. This allows larger modulation amplitudes to be used without causing significant cavity heating or microphonics. The W-band spectrometer is capable of rapid sweeps from 0 to 7 T, as well as narrower (0.1 T) high-resolution sweeps. It is suitable for a wide variety of samples including liquids and samples cooled to sub-liquid-helium temperatures.

Multi-frequency EPR determination of zero field splitting of high spin species in liquids: Gd(III) chelates in water

Multi-frequency EPR spectroscopy at 9.5, 35, 94, and 249 GHz has been employed to investigate the zero field splitting (ZFS) of high spin ions in liquids. In particular, experiments are reported on aqueous solutions of DTPA and DOTA chelates of Gd(III), and on the uncomplexed ion, which are relevant to the effectiveness of paramagnetic contrast agents for magnetic resonance imaging (MRI). The field dependence of the centroid of the resonance line, characterized by an effective g factor, geff, has been analysed in order to determine δ1, the trace of the square of the ZFS matrix. Analysis of the variation in transverse electron spin relaxation (T 2e) with experimental frequency provides yet another route to measure δ2 from EPR data. This analysis also gives δv, a correlation time describing the time-dependent ZFS effect. The ZFS parameters so obtained agree well with results obtained by the analysis of proton nuclear magnetic relaxation dispersion. At 94 GHz, partially resolved spectra from chelated and unc...

Quantum phase transition in a resonant level coupled to interacting leads

A Luttinger liquid is an interacting one-dimensional electronic system, quite distinct from the ‘conventional’ Fermi liquids formed by interacting electrons in two and three dimensions. Some of the most striking properties of Luttinger liquids are revealed in the process of electron tunnelling. For example, as a function of the applied bias voltage or temperature, the tunnelling current exhibits a non-trivial power-law suppression. (There is no such suppression in a conventional Fermi liquid.) Here, using a carbon nanotube connected to resistive leads, we create a system that emulates tunnelling in a Luttinger liquid, by controlling the interaction of the tunnelling electron with its environment. We further replace a single tunnelling barrier with a double-barrier, resonant-level structure and investigate resonant tunnelling between Luttinger liquids. At low temperatures, we observe perfect transparency of the resonant level embedded in the interacting environment, and the width of the resonance tends to zero. We argue that this behaviour results from many-body physics of interacting electrons, and signals the presence of a quantum phase transition. Given that many parameters, including the interaction strength, can be precisely controlled in our samples, this is an attractive model system for studying quantum critical phenomena in general, with wide-reaching implications for understanding quantum phase transitions in more complex systems, such as cold atoms and strongly correlated bulk materials.

Cysteine-Specific Labeling of Proteins with a Nitroxide Biradical for Dynamic Nuclear Polarization NMR

Dynamic nuclear polarization (DNP) enhances the signal in solid-state NMR of proteins by transferring polarization from electronic spins to the nuclear spins of interest. Typically, both the protein and an exogenous source of electronic spins, such as a biradical, are either codissolved or suspended and then frozen in a glycerol/water glassy matrix to achieve a homogeneous distribution. While the use of such a matrix protects the protein upon freezing, it also reduces the available sample volume (by ca. a factor of 4 in our experiments) and causes proportional NMR signal loss. Here we demonstrate an alternative approach that does not rely on dispersing the DNP agent in a glassy matrix. We synthesize a new biradical, ToSMTSL, which is based on the known DNP agent TOTAPOL, but also contains a thiol-specific methanethiosulfonate group to allow for incorporating this biradical into a protein in a site-directed manner. ToSMTSL was characterized by EPR and tested for DNP of a heptahelical transmembrane protein, Anabaena sensory rhodopsin (ASR), by covalent modification of solvent-exposed cysteine residues in two (15)N-labeled ASR mutants. DNP enhancements were measured at 400 MHz/263 GHz NMR/EPR frequencies for a series of samples prepared in deuterated and protonated buffers and with varied biradical/protein ratios. While the maximum DNP enhancement of 15 obtained in these samples is comparable to that observed for an ASR sample cosuspended with ~17 mM TOTAPOL in a glycerol-d8/D2O/H2O matrix, the achievable sensitivity would be 4-fold greater due to the gain in the filling factor. We anticipate that the DNP enhancements could be further improved by optimizing the biradical structure. The use of covalently attached biradicals would broaden the applicability of DNP NMR to structural studies of proteins.

Spin-labeled pH-sensitive phospholipids for interfacial pKa determination: synthesis and characterization in aqueous and micellar solutions

The synthesis and characterization of spin-labeled phospholipids (SLP)--derivatives of 1,2-dipalmitoyl-sn-glycero-3-phosphothioethanol (PTE)--with pH-reporting nitroxides that are covalently attached to the lipids polar headgroup are being reported. Two lipids were synthesized by reactions of PTE with thiol-specific, pH-sensitive methanethiosulfonate spin labels methanethiosulfonic acid S-(1-oxyl-2,2,3,5,5-pentamethylimidazolidin-4-ylmethyl) ester (IMTSL) and S-4-(4-(dimethylamino)-2-ethyl-5,5-dimethyl-1-oxyl-2,5-dihydro-1H-imidazol-2-yl)benzyl methanethiosulfonate (IKMTSL). The pKa values of the IMTSL-PTE lipid measured by EPR titration in aqueous buffer/isopropyl alcohol solutions of various compositions were found to be essentially the same (pKa approximately 2.35), indicating that in mixed aqueous/organic solvents, the amphiphilic lipid molecules could be shielded from changing bulk conditions by a local shell of solvent molecules. To overcome this problem, the spin-labeled lipids were modeled by synthesizing IMTSL- and IKMTSL-2-mercaptoethanol adducts. These model compounds yielded the intrinsic pKa0s for IMTSL-PTE and IKMTSL-PTE in aqueous buffers as 3.33 +/- 0.03 and 5.98 +/- 0.03, respectively. A series of EPR titrations of IMTSL-PTE in mixed water/isopropyl alcohol solution allowed for calibrating the polarity-induced pKa shifts, deltapKapol, vs bulk solvent dielectric permittivity. These calibration data allowed for estimating the local dielectric constant, epsilon(eff), experienced by the reporter nitroxide of the IMTSL-PTE lipid incorporated into the nonionic Triton X-100 micelles as 60 +/- 5 and 57 +/- 5 at 23 and 48 degrees C, respectively. For micelles formed from an anionic surfactant sodium dodecyl sulfate (SDS) the electrostatic-induced pKa shift, deltapKael = 2.06 +/- 0.04 units of pH, was obtained by subtracting the polarity-induced contribution. This shift yields psi = -121 mV electric potential of the SDS micelle surface.

Defect dependent ferromagnetism in MgO doped with Ni and Co

We have investigated magnetic properties of MgO single crystals doped with Ni and Co impurities, and studied changes in magnetic properties after heavy ion irradiation. These results are compared with doped single-crystal thin films that contain a higher concentration of trapped defects. The as-grown bulk single crystals, which contain a small equilibrium concentration of vacancies, exhibit a perfect paramagnetic behavior throughout the temperature range and magnetic field. By introducing defects either by ion irradiation or by thin film deposition, which have trapped defects, we are able to achieve defect-mediated ferromagnetic ordering.

Interfacial Surface Properties of Thiol-Protected Gold Nanoparticles: A Molecular Probe EPR Approach

We present a molecular probe technique for accessing interfacial surface electrostatics of ligand-protected gold nanoparticles. A series of ligands with variable length of the hydrocarbon bridge between the anchoring sulfur and the reporting pH-sensitive nitroxide is described. The protonation state of this probe is directly observed by EPR spectroscopy. For tiopronin-protected Au nanoparticles, we observed an increase in pKa of up to ca. 1.1 pH units that was affected by the position of the reporter moiety with respect to the monolayer interface.