Alfredo Medina-Molner

Structural analysis of Cu(II) ligation to the 5′-GMP nucleotide by pulse EPR spectroscopy

Simple copper salts are known to denature poly d(GC). On the other hand, copper complexes of substituted 1,4,7,10,13-pentaazacyclohexadecane-14,16-dione are able to convert the right-handed B form of the same DNA sequence to the corresponding left-handed Z form. A research program was started in order to understand why Cu(II) as an aquated ion melts DNA and induces the conformational change to Z-DNA in the form of an azamacrocyclic complex. In this paper, we present a continuous wave and pulse electron paramagnetic resonance study of the mononucleotide model system Cu(II)–guanosine 5′-monophosphate . Pulse EPR methods like electron–nuclear double resonance and hyperfine sublevel correlation spectroscopy provide unique information about the electronic and geometric structure of this model system through an elaborate mapping of the hyperfine and nuclear quadrupole interactions between the unpaired electron of the Cu(II) ion and the magnetic nuclei of the nucleotide ligand. It was found that the Cu(II) ion is directly bound to N7 of guanosine 5′-monophosphate and indirectly bound via a water of hydration to a phosphate group. This set of experiments opens the way to more detailed structural characterization of specifically bound metal ions in a variety of nucleic acids of biological interest, in particular to understand the role of the metal–(poly)nucleotide interaction.

Interaction of mono- and dinuclear metal complexes with mono- and oligonucleotides for analytical, radio- and chemotoxic purposes

In this article we briefly describe our recent results concerning the interaction of mononuclear [M(CO) 3 ] + (M = Re, 9 9 Tc and 9 9 m Tc) based complexes with guanine and plasmid DNA for chemo- and/or radiotherapeutic purposes. Furthermore, studies with mono- and dinuclear, coordinatively unsaturated Ni(II) and Cu(II) complexes inducing B- to Z-DNA transitions are outlined. The strong interaction of [M(CO) 3 ] + with one guanine allows the direct introduction of this core into oligodeoxynucleotides (ODN), without their previous derivatization, for further elucidation of their biological behavior. Vectors labeled in this way can later be used in radioimaging or -therapy studies. The [M(CO) 3 ] + core can also mediate the introduction of further biologically active or, for analytical purposes, fluorescent molecules. Alternatively, ODNs can be derivatized with amino acid based chelators such as histidine. We describe the induction of structural changes in plasmid DNA observed after reaction with the [M(CO) 3 ] + moiety. This indicates a cisplatin-like behavior useful for future chemotherapy. Finally, studies of the interaction of mono- and dinuclear complexes with ODN inducing B- to Z-DNA transitions are described and compared to the effect of common electrolytes alone. A clear correlation between salt type and salt concentration was found. These complexes have a strong potential to be used for analytical or biological purposes as well.

N,N,O and N,O,N Meridional cis Coordination of Two Guanines to Copper(II) by d(CGCGCG)2.

Many research groups study the generation of supramolecular n-dimensional arrays by combining metals with DNA building blocks. Most of the time, the natural nucleobases are modified to obtain higher-affinity metal binding sites. Using unmodified nucleobases avoids a potentially difficult synthesis; however, they have the possible disadvantage of a less defined and/or weaker coordination mode of the metal. Structural studies on the behavior of copper(II) as a linking metal and guanine as the natural ligand for metals in unmodified DNA are reported. Previously, the ability of mono- and dinuclear metal complexes to induce Z-DNA has been explored [Medina-Molner, A.; Spingler, B. Chem. Commun. 2012, 48, 1961; Medina-Molner, A.; Rohner, M.; Pandiarajan, D.; Spingler, B. Dalton Trans. 2015, 44, 3664]. Herein, X-ray crystallographic studies of the structures resulting from the combination of copper(II) ions with DNA hexamers of the general sequence d(CG)3 are presented. Three different packing motifs were observed in three crystal structures with resolutions ranging from 2.15 to 1.45 Å. The motifs are dependent upon other cations being present and/or the crystallization conditions. The first examples of intramolecular O6,N7-chelates of a neutral purine nucleobase to copper(II) were obtained as well as the first meridional N,N,O and N,O,N coordination modes of two guanines to copper(II). The fascinating coordination chemistry of copper(II) complexes generated by the Z-DNA oligonucleotides and the differences to simple nucleobases complexes with copper(II) are discussed in detail.