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Dive into the research topics where Alfredo Sánchez de Merás is active.

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Featured researches published by Alfredo Sánchez de Merás.


Wiley Interdisciplinary Reviews: Computational Molecular Science | 2014

The Dalton quantum chemistry program system

Kestutis Aidas; Celestino Angeli; Keld L. Bak; Vebjørn Bakken; Radovan Bast; Linus Boman; Ove Christiansen; Renzo Cimiraglia; Sonja Coriani; Pål Dahle; Erik K. Dalskov; Ulf Ekström; Thomas Enevoldsen; Janus Juul Eriksen; Patrick Ettenhuber; Berta Fernández; Lara Ferrighi; Heike Fliegl; Luca Frediani; Kasper Hald; Asger Halkier; Christof Hättig; Hanne Heiberg; Trygve Helgaker; Alf C. Hennum; Hinne Hettema; Eirik Hjertenæs; Stine Høst; Ida Marie Høyvik; Maria Francesca Iozzi

Dalton is a powerful general‐purpose program system for the study of molecular electronic structure at the Hartree–Fock, Kohn–Sham, multiconfigurational self‐consistent‐field, Møller–Plesset, configuration‐interaction, and coupled‐cluster levels of theory. Apart from the total energy, a wide variety of molecular properties may be calculated using these electronic‐structure models. Molecular gradients and Hessians are available for geometry optimizations, molecular dynamics, and vibrational studies, whereas magnetic resonance and optical activity can be studied in a gauge‐origin‐invariant manner. Frequency‐dependent molecular properties can be calculated using linear, quadratic, and cubic response theory. A large number of singlet and triplet perturbation operators are available for the study of one‐, two‐, and three‐photon processes. Environmental effects may be included using various dielectric‐medium and quantum‐mechanics/molecular‐mechanics models. Large molecules may be studied using linear‐scaling and massively parallel algorithms. Dalton is distributed at no cost from http://www.daltonprogram.org for a number of UNIX platforms.


Journal of Chemical Physics | 1997

The CC3 model: An iterative coupled cluster approach including connected triples

Henrik Koch; Ove Christiansen; Poul Jo; rgensen; Alfredo Sánchez de Merás; Trygve Helgaker

An alternative derivation of many-body perturbation theory (MBPT) has been given, where a coupled cluster parametrization is used for the wave function and the method of undetermined Lagrange multipliers is applied to set up a variational coupled cluster energy expression. In this variational formulation, the nth-order amplitudes determine the energy to order 2n+1 and the nth-order multipliers determine the energy to order 2n+2. We have developed an iterative approximate coupled cluster singles, doubles, and triples model CC3, where the triples amplitudes are correct through second order and the singles amplitudes are treated without approximations due to the unique role of singles as approximate orbital relaxation parameters. The compact energy expressions obtained from the variational formulation exhibit in a simple way the relationship between CC3, CCSDT-1a [Lee et al., J. Chem. Phys. 81, 5906 (1984)] CCSDT-1b models [Urban et al., J. Chem. Phys. 83, 4041 (1985)], and the CCSD(T) model [Raghavachari et...


Journal of Chemical Physics | 2003

Reduced scaling in electronic structure calculations using Cholesky decompositions

Henrik Koch; Alfredo Sánchez de Merás; Thomas Bondo Pedersen

We demonstrate that substantial computational savings are attainable in electronic structure calculations using a Cholesky decomposition of the two-electron integral matrix. In most cases, the computational effort involved calculating the Cholesky decomposition is less than the construction of one Fock matrix using a direct O(N2) procedure.


Journal of Chemical Physics | 1996

Large‐scale calculations of excitation energies in coupled cluster theory: The singlet excited states of benzene

Ove Christiansen; Henrik Koch; Asger Halkier; Poul Jo; rgensen; Trygve Helgaker; Alfredo Sánchez de Merás

Algorithms for calculating singlet excitation energies in the coupled cluster singles and doubles (CCSD) model are discussed and an implementation of an atomic‐integral direct algorithm is presented. Each excitation energy is calculated at a cost comparable to that of the CCSD ground‐state energy. Singlet excitation energies are calculated for benzene using up to 432 basis functions. Basis‐set effects of the order of 0.2 eV are observed when the basis is increased from augmented polarized valence double‐zeta (aug‐cc‐pVDZ) to augmented polarized valence triple‐zeta (aug‐cc‐pVTZ) quality. The correlation problem is examined by performing calculations in the hierarchy of coupled cluster models CCS, CC2, CCSD, and CC3, as well as by using the CCSDR(3) perturbative triples corrections. The effect of triple excitations are less than 0.2 eV for all excitations except for the 2 1E2g state. The calculated excitation energies are compared with experiment and other theoretical results.


Journal of Chemical Physics | 1996

The integral‐direct coupled cluster singles and doubles model

Henrik Koch; Alfredo Sánchez de Merás; Trygve Helgaker; Ove Christiansen

An efficient and highly vectorized implementation of the coupled cluster singles and doubles (CCSD) model using a direct atomic integral technique is presented. The minimal number of n6 processes has been implemented for the most time consuming terms and point group symmetry is used to further reduce operation counts and memory requirements. The significantly increased application range of the CCSD method is illustrated with sample calculations on several systems with more than 500 basis functions. Furthermore, we present the basic trends of an open ended algorithm and discuss the use of integral prescreening.


Journal of Chemical Physics | 2008

Accurate ab initio density fitting for multiconfigurational self-consistent field methods

Francesco Aquilante; Thomas Bondo Pedersen; Roland Lindh; Björn O. Roos; Alfredo Sánchez de Merás; Henrik Koch

Using Cholesky decomposition and density fitting to approximate the electron repulsion integrals, an implementation of the complete active space self-consistent field (CASSCF) method suitable for large-scale applications is presented. Sample calculations on benzene, diaquo-tetra-mu-acetato-dicopper(II), and diuraniumendofullerene demonstrate that the Cholesky and density fitting approximations allow larger basis sets and larger systems to be treated at the CASSCF level of theory with controllable accuracy. While strict error control is an inherent property of the Cholesky approximation, errors arising from the density fitting approach are managed by using a recently proposed class of auxiliary basis sets constructed from Cholesky decomposition of the atomic electron repulsion integrals.


Journal of Chemical Physics | 2004

Polarizability and optical rotation calculated from the approximate coupled cluster singles and doubles CC2 linear response theory using Cholesky decompositions.

Thomas Bondo Pedersen; Alfredo Sánchez de Merás; Henrik Koch

A new implementation of the approximate coupled cluster singles and doubles CC2 linear response model using Cholesky decomposition of the two-electron integrals is presented. Significantly reducing storage demands and computational effort without sacrificing accuracy compared to the conventional model, the algorithm is well suited for large-scale applications. Extensive basis set convergence studies are presented for the static and frequency-dependent electric dipole polarizability of benzene and C60, and for the optical rotation of CNOFH2 and (-)-trans-cyclooctene (TCO). The origin-dependence of the optical rotation is calculated and shown to persist for CC2 even at basis set convergence.


Linear-Scaling Techniques in Computational Chemistry and Physics : Methods and Applications | 2011

Cholesky Decomposition Techniques in Electronic Structure Theory

Francesco Aquilante; Linus Boman; Jonas Boström; Henrik Koch; Roland Lindh; Alfredo Sánchez de Merás; Thomas Bondo Pedersen

We review recently developed methods to efficiently utilize the Cholesky decomposition technique in electronic structure calculations. The review starts with a brief introduction to the basics of the Cholesky decomposition technique. Subsequently, examples of applications of the technique to ab inito procedures are presented. The technique is demonstrated to be a special type of a resolution-of-identity or density-fitting scheme. This is followed by explicit examples of the Cholesky techniques used in orbital localization, computation of the exchange contribution to the Fock matrix, in MP2, gradient calculations, and so-called method specific Cholesky decomposition. Subsequently, examples of calibration of the method with respect to computed total energies, excitation energies, and auxiliary basis set pruning are presented. In particular, it is demonstrated that the Cholesky method is an unbiased method to derive auxiliary basis sets. Furthermore, details of the implementational considerations are put forward and examples from a parallel Cholesky decomposition scheme is presented. Finally, an outlook and perspectives are presented, followed by a summary and conclusions section. We are of the opinion that the Cholesky decomposition method is a technique that has been overlooked for too long. We have just recently started to understand how to efficiently incorporate the method in existing ab initio programs. The full potential of the Cholesky technique has not yet been fully explored.


Journal of Chemical Physics | 2008

Method specific Cholesky decomposition : Coulomb and exchange energies

Linus Boman; Henrik Koch; Alfredo Sánchez de Merás

We present a novel approach to the calculation of the Coulomb and exchange contributions to the total electronic energy in self consistent field and density functional theory. The numerical procedure is based on the Cholesky decomposition and involves decomposition of specific Hadamard product matrices that enter the energy expression. In this way, we determine an auxiliary basis and obtain a dramatic reduction in size as compared to the resolution of identity (RI) method. Although the auxiliary basis is determined from the energy expression, we have complete control of the errors in the gradient or Fock matrix. Another important advantage of this method specific Cholesky decomposition is that the exchange energy and Fock matrix can be evaluated with a linear scaling effort contrary to the RI method or standard Cholesky decomposition of the two-electron integral matrix. The methods presented show the same scaling properties as the so-called local density fitting methods, but with full error control.


Journal of Chemical Physics | 2000

Size-intensive decomposition of orbital energy denominators

Henrik Koch; Alfredo Sánchez de Merás

We introduce an alternative to Almlof and Haser’s Laplace transform decomposition of orbital energy denominators used in obtaining reduced scaling algorithms in perturbation theory based methods. The new decomposition is based on the Cholesky decomposition of positive semidefinite matrices. We show that orbital denominators have a particular short and size-intensive Cholesky decomposition. The main advantage in using the Cholesky decomposition, besides the shorter expansion, is the systematic improvement of the results without the penalties encountered in the Laplace transform decomposition when changing the number of integration points in order to control the convergence. Applications will focus on the coupled-cluster singles and doubles model including connected triples corrections [CCSD(T)], and several numerical examples are discussed.

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Henrik Koch

Norwegian University of Science and Technology

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Paolo Lazzeretti

University of Modena and Reggio Emilia

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Linus Boman

Norwegian University of Science and Technology

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Henrik Koch

Norwegian University of Science and Technology

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