Ali Elkarmi

Biodegradation of 2,4-dichlorophenol originating from pharmaceutical industries

The aims of this work were to isolate a microorganism from the wastewater of pharmaceutical industries, to examine the difference in its growth utilization of 2,4-dichlorophenol as the sole carbon source pre and post-exposure to UV-irradiation and to investigate its efficiency of biodegradation at different temperatures and pH values using a laboratory benchtop bioreactor. Sludge was obtained from the wastewater and standard isolation and identification techniques were used to identify the microorganism. The biodegradability was tested at temperatures of 25, 30, 35 and 40°C and at pH values of 6.5, 7.0 and 8.0. The results indicated that the isolated microorganism was Pseudomonas alcaligenes, the maximum concentration of 2,4-dichlorophenol which bacteria can grow on before UVirradiation was 220 and 380 mg/l after UV-irradiation. The variation in temperature values resulted in different degradation rates and that the degradation of 2,4-dichlorophenol increased at a higher pH value. From these results, it is concluded that P. alcaligenes can be used for the degradation of 2,4-dichlorophenol, UV-irradiation can be successfully used for the improvement of P. alcaligenes biodegradability and that the best 2,4-dichlorophenol biodegradation was at 35°C and pH 7.

2-deoxy-D-Glucose Synergizes with Doxorubicin or L-Buthionine Sulfoximine to Reduce Adhesion and Migration of Breast Cancer Cells

BACKGROUND Cancer metastasis depends on cell motility which is driven by cycles of actin polymerization and depolymerization. Reactive oxygen species (ROS) and metabolic oxidative stress have long been associated with cancer. ROS play a vital role in regulating actin dynamics that are sensitive to oxidative modification. The current work aimed at studying the effects of sub-lethal metabolic oxidative stress on actin cytoskeleton, focal adhesion and cell migration. MATERIALS AND METHODS T47D human breast cancer cells were treated with 2-deoxy- D-glucose (2DG), L-buthionine sulfoximine (BSO), or doxorubicin (DOX), individually or in combination, and changes in intracellular total glutathione and malondialdehyde (MDA) levels were measured. The expression of three major antioxidant enzymes was studied by immunoblotting, and cells were stained with fluorescent- phalloidin to evaluate changes in F-actin organization. In addition, cell adhesion and degradation ability were measured. Cell migration was studied using wound healing and transwell migration assays. RESULTS Our results show that treating T47D human breast cancer cells with drug combinations (2DG/BSO, 2DG/DOX, or BSO/DOX) decreased intracellular total glutathione and increased oxidized glutathione, lipid peroxidation, and cytotoxicity. In addition, the drug combinations caused a reduction in cell area and mitotic index, prophase arrest and a decreased ability to form invadopodia. The formation of F-actin aggregates was increased in treated T47D cells. Moreover, combination therapy reduced cell adhesion and the rate of cell migration. CONCLUSIONS Our results suggest that exposure of T47D breast cancer cells to combination therapy reduces cell migration via effects on metabolic oxidative stress.

Allometry ofUrtica urens in polluted and unpolluted habitats

The allometry ofUrtica urens (small nettle), an important medicinal plant in many countries, growing in an area near pollution sources and an area away from pollution sources was determined. The allometric coefficients were determined for nonlinear relationships between plant height, stem width, root length, petiole length, leaf dry weight, petiole dry weight, leaf length, leaf width, leaf area and specific leaf area. The slopes of the linear equations were determined for the above parameters. The results showed that there is a difference in the allometry of different parts ofU. urens growing in these two areas. Air pollutants reduced the plant height, stem width, root length and petiole length and increased leaf parameters. The same pattern of growth was reflected by comparing the slopes of the straight lines of the parts of the plants growing in the two areas.

Allometric relationships ofmalva parviflora growing in two different bioclimatic regions

A total of 660 individual plants ofMalva parviflora, a medicinal plant in many countries, growing in two bioclimatic regions were randomly collected with the aim of examining the differences in the allometry of this herbaceous plant growing in two bioclimatic regions. Allometric relationships were found in plant height, stem width, leaf area, leaf length, leaf width, petiole length, and leaf dry weight whereas no relationship was found between plant height or petiole length with specific leaf area. Plants growing in the cool bioclimatic region showed that plant height increases more than the increase in stem width, leaf length, leaf width, and petiole length while plants growing in the warm bioclimatic region showed that plant height increase was lower than that of stem width, leaf length, leaf width, and petiole length. Plant height relationship with root length indicated that in the cool region the plant height increase was less than the increase in the root length while the opposite occurred in the warm region. These differences can be explained by the effects of the different environmental conditions present in the two bioclimatic regions such as water scarcity and availability on the growth ofM. parviflora.

Jordanian population data on five STR forensic loci: D16S539, TPOX, CSF1PO, Penta D, and Penta E

The allele distributions at five STR loci, D16S539, TPOX, CSF1PO, Penta D, and Penta E have been determined. None of the five loci were found to deviate from Hardy-Weinberg expectations according to the results of the G (homogeneity) test.

Inhibitory effect of Taraxacum officinale L (Compositae) aqueous root extract on spermatogenesis

Purpose: To investigate if T. officinale root aqueous extract has anti-spermatogenic activity similar to that of the whole plant which was shown previously to inhibit spermatogenesis. Methods: T. officinale aqueous extract was prepared by soaking 100 g of dried materials in 1 L distilled water for two days at 45 oC. Fifty adult male rats were divided into five groups and treated for 60 days. Four groups were gavaged with the whole plant or root aqueous extract in low or high doses. The male rat rats were allowed to mate with female rats. The control group received distilled water. Sperm count, motility and morphology as well as chromatin integrity were evaluated. Results: Serum testosterone level, sperm parameters, pregnancy rate and average number of fetuses per pregnant females decreased significantly in the treated groups compared to control and in the rootreceiving rats compared to the whole plant-receiving rats. Female rats which were mated with high dose root-receiving males did not deliver fetuses. Cross sections of seminiferous tubules of T. officinale treated rats showed lesions and disorganized germinal epithelium. Late spermatogenesis maturation arrest (spermatid stage) was observed in all of the treated groups except the high dose root-receiving group which showed early maturation arrest (spermatocyte stage). In addition, the mRNA level of two spermatogonial stem cell markers responsible for self-renewal and proliferation of spermatogonia increased in high dose-receiving rats. Conclusion: T. officinale root aqueous extract has inhibitory effects on spermatogenesis. Further studies are required to identify specific ingredient(s) in T. officinale that may be useful as male contraceptive(s). Keywords: Taraxacum officinale , Dandelion, GDNF family receptor alpha 1, Macrophage Colony- Stimulating Factor, Promyelocytic Leukaemia Zinc-Finger, Testosterone, Sperm count

Modeling Acquired Immunity as an Outcome of the Interaction between Host-related Factors and Potential Antigen Repertories.

In an attempt to understand why different organisms defend against potential antigens differently, the influence of possible interactions between host-related factors and respective antigen repertoires on the complexity of host defense mechanisms was investigated. A compartmental model coupling these two variables was developed and tested. Data analysis suggests that the more complex the organism, the larger the size of its antigen repertoire. The two variables seem to advance in a parallel fashion suggesting that they could reach a state of equilibrium. Therefore, host-related factors may play a role in determining the size of the antigen repertoire on the one hand; on the other hand, increased antigen repertoire size may dictate the evolution of more complex mechanisms of immunity. Although the interplay between the two variables maintains some common themes in different groups of organisms, it results in clear differences pertinent to immunologic specificity, diversity, memory and self nonself discrimination.