Aline Medina

Surface-Altered Protonation Studied by Photoelectron Spectroscopy and Reactive Dynamics Simulations

The extent to which functional groups are protonated at aqueous interfaces as compared to bulk is deemed essential to several areas in chemistry and biology. The origin of such changes has been the source of intense debate. We use X-ray photoelectron spectroscopy and all-atom reactive molecular dynamics simulations as two independent methods to probe, at the molecular scale, both bulk and surface distributions of protonated species of cysteine in an aqueous solution. We show that the distribution of the cysteine species at the surface is quite different from that in the bulk. We argue that this finding, however, cannot be simply related to a change in the extent of proton sharing between the two conjugate acid/base pairs that may occur between these two regions. The present theoretical simulations identify species at the surface that are not present in the bulk.

Ionization and Fragmentation of Formamide Induced by Synchrotron Radiation in the Valence Region via Photoelectron Photoion Coincidence Measurements and Density Functional Theory Calculations.

We have performed a theoretical and experimental study of the formamide (HCONH2) photofragmentation and photoionization processes in the gas phase. The experiment was perfomed by using a time-of-flight mass spectrometer using the photoelectron photoion coincidence (PEPICO) technique in the valence region, from photons with energy between 10 and 20 eV. We have obtained both mass and partial ion yield spectra, identified by the mass-to-charge ratio as a function of the photon energy. With this setup, we could ascertain the threshold energy for the production of formamide cation and its cationic fragments. The theoretical analysis of the formamide photofragmentation channels are fulfilled by the density functional theory (DFT) and the time-dependent density functional theory (TDDFT). The theoretical analysis allowed us to estimate, for example, which atoms are lost during the photofragmentation. We have also developed a theoretical-experimental analysis of the main fragments produced in the dissociation: m/q = 45 (HCONH2+), m/q = 44 (CONH2+), m/q = 29 (HCO+), m/q = 17 (NH3+), and m/q = 16 (NH2+).

Communication: Protonation process of formic acid from the ionization and fragmentation of dimers induced by synchrotron radiation in the valence region

The ionization and fragmentation of monomers of organic molecules have been extensively studied in the gas phase using mass spectroscopy. In the spectra of these molecules it is possible to identify the presence of protonated cations, which have a mass-to-charge ratio one unit larger than the parent ion. In this work, we investigate this protonation process as a result of dimers photofragmentation. Experimental photoionization and photofragmentation results of doubly deuterated formic acid (DCOOD) in the gas phase by photons in the vacuum ultraviolet region are presented. The experiment was performed by using a time-of-flight mass spectrometer installed at the Brazilian Synchrotron Light Laboratory and spectra for different pressure values in the experimental chamber were obtained. The coupled cluster approach with single and double substitutions was employed to assist the experimental analysis. Results indicate that protonated formic acid ions are originated from dimer dissociation, and the threshold photoionization of (DCOOD)⋅D(+) is also determined.

Photoabsorption and photoionization cross sections for formaldehyde in the vacuum-ultraviolet energy range

We report a theoretical-experimental investigation on the interaction of vacuum-ultraviolet radiation with formaldehyde (H2CO) in the gas phase. Experimentally, the absolute photoabsorption cross sections and the photoionization quantum yields were measured in the (11.0–21.5) eV range using the double-ion chamber technique. Also, the absolute photoionization and neutral-decay cross sections were derived from these data. In addition, in the same energy region, the dissociation pattern was obtained with a time-of-flight mass spectrometer using the photoelectron-photoion coincidence technique, and the absolute photoionization cross sections were derived for each ionic fragment observed. Moreover, theoretical photoionization cross sections were calculated for the ionization of the four outermost molecular valence orbitals (2b2, 1b1, 5a1, and 1b2) from the threshold to 35 eV. The calculations were performed using the iterative Schwinger variational method to solve the Lippmann-Schwinger equation in the exact s...

Ionization and Fragmentation of DCOOD Induced by Synchrotron Radiation at the Oxygen 1s Edge: The Role of Dimer Formation

The ionization and photofragmentation of molecules in the core region has been widely investigated for monomers and dimers of organic molecules in the gas phase. In this study, we used synchrotron radiation to excite electrons of the oxygen K-edge in an effusive molecular beam of doubly deuterated formic acid. We used time-of-flight mass spectrometry and employed the spectroscopic techniques photoelectron-photoion coincidence and photoelectron photoion-photoion coincidence to obtain spectra of single and double coincidences at different pressures. Our results indicate the presence of ions and ion pairs that have charge-to-mass ratio higher than the monomer DCOOD, as the (DCOOD)·D(+), and pairs (DCO(+), DCO(+)) and (CO(+), DCO(+)). Comparing the spectra obtained for different pressures we can ascertain that these ions are formed by the fragmentation of DCOOD dimers.

Collisional production of metastable hydrogen atoms from cold H2

We have investigated the production of metastable H(22S) coming from the dissociation of cold H2 molecules by electron impact. Two detectors have analysed the neutral fragments as a function of their time-of-flight through localized quenching of H(22S) in H(22P) and Lyman-a detection.

Photostability studies of prebiotic molecules at the VUV region

In this work we report absolute cross section studies of prebiotic molecules measured in the VUV range using the double ion chamber technique and synchrotron radiation. Absorption, ionization and neutral decay cross sections will be presented, together with the absolute ionization quantum yield. Additionally, partial ion yield spectra were measured by a TOF mass spectrometer.

New experiment for coincidence detection of H(2l)+H(2l') coming from dissociation of H2 induced by electron impact

In this work we present a new experimental apparatus being set up in Rio de Janeiro to study coincidence detection of pairs of excited hydrogen atoms coming from the dissociation of a single H2 molecule by detecting emitted Lyman-alpha radiation.