Allyson E. Sgro

Single-synapse ablation and long-term imaging in live C. elegans

Synapses are individually operated, computational units for neural communication. To manipulate physically individual synapses in a living organism, we have developed a laser ablation technique for removing single synapses in live neurons in C. elegans that operates without apparent damage to the axon. As a complementary technique, we applied microfluidic immobilization of C. elegans to facilitate long-term fluorescence imaging and observation of neuronal development. With this technique, we directly demonstrated the existence of competition between developing synapses in the HSNL motor neuron.

From intracellular signaling to population oscillations: Bridging size- and time-scales in collective behavior

Collective behavior in cellular populations is coordinated by biochemical signaling networks within individual cells. Connecting the dynamics of these intracellular networks to the population phenomena they control poses a considerable challenge because of network complexity and our limited knowledge of kinetic parameters. However, from physical systems, we know that behavioral changes in the individual constituents of a collectively behaving system occur in a limited number of well‐defined classes, and these can be described using simple models. Here, we apply such an approach to the emergence of collective oscillations in cellular populations of the social amoeba Dictyostelium discoideum. Through direct tests of our model with quantitative in vivo measurements of single‐cell and population signaling dynamics, we show how a simple model can effectively describe a complex molecular signaling network at multiple size and temporal scales. The model predicts novel noise‐driven single‐cell and population‐level signaling phenomena that we then experimentally observe. Our results suggest that like physical systems, collective behavior in biology may be universal and described using simple mathematical models.

Fitness tradeoffs between spores and nonaggregating cells can explain the coexistence of diverse genotypes in cellular slime molds

Significance Cellular slime molds, including Dictyostelium discoideum, are amoebae whose life cycle includes both single-cellular and multicellular stages, the latter achieved when individual amoebae aggregate upon starvation. In the (not necessarily clonal) aggregate, there is strong selection to be represented in the reproductive spores. This would lead to a reduction in overall genotypic diversity inconsistent with the great diversity found in nature. We suggest that cells that fail to aggregate provide an additional fitness component that can resolve the inconsistency: Strong selection for aggregation only occurs in environments where food is slow to replenish. Otherwise, there is strong selection for unicellularity. These tradeoffs allow a multitude of genotypes to coexist when many environments with different food-recovery characteristics are connected via weak-to-moderate dispersal. Cellular slime molds, including the well-studied Dictyostelium discoideum, are amoebae whose life cycle includes both a single-cellular and a multicellular stage. To achieve the multicellular stage, individual amoebae aggregate upon starvation to form a fruiting body made of dead stalk cells and reproductive spores, a process that has been described in terms of cooperation and altruism. When amoebae aggregate they do not perfectly discriminate against nonkin, leading to chimeric fruiting bodies. Within chimeras, complex interactions among genotypes have been documented, which should theoretically reduce genetic diversity. This is however inconsistent with the great diversity of genotypes found in nature. Recent work has shown that a little-studied component of D. discoideum fitness—the loner cells that do not participate in the aggregation—can be selected for depending on environmental conditions and that, together with the spores, they could represent a bet-hedging strategy. We suggest that in all cellular slime molds the existence of loners could resolve the apparent diversity paradox in two ways. First, if loners are accounted for, then apparent genotypic skew in the spores of chimeras could simply be the result of different investments into spores versus loners. Second, in an ecosystem with multiple local environments differing in their food recovery characteristics and connected globally via weak-to-moderate dispersal, coexistence of multiple genotypes can occur. Finally, we argue that the loners make it impossible to define altruistic behavior, winners or losers, without a clear description of the ecology.

Quantitative biology: where modern biology meets physical sciences

Quantitative methods and approaches have been playing an increasingly important role in cell biology in recent years. They involve making accurate measurements to test a predefined hypothesis in order to compare experimental data with predictions generated by theoretical models, an approach that has benefited physicists for decades. Building quantitative models in experimental biology not only has led to discoveries of counterintuitive phenomena but has also opened up novel research directions. To make the biological sciences more quantitative, we believe a two-pronged approach needs to be taken. First, graduate training needs to be revamped to ensure biology students are adequately trained in physical and mathematical sciences and vice versa. Second, students of both the biological and the physical sciences need to be provided adequate opportunities for hands-on engagement with the methods and approaches necessary to be able to work at the intersection of the biological and physical sciences. We present the annual Physiology Course organized at the Marine Biological Laboratory (Woods Hole, MA) as a case study for a hands-on training program that gives young scientists the opportunity not only to acquire the tools of quantitative biology but also to develop the necessary thought processes that will enable them to bridge the gap between these disciplines.

SnapShot: Optical Control and Imaging of Brain Activity

Optical methods have assumed a leading role in the study of intact nervous system function. In comparison with traditional electrical recordings, optical imaging enables the measurement of activity in many structures at once, including subcellular domains. For observing function at the cellular level, multiphoton fluorescence microscopy allows tracking to be done with spatiotemporal resolution in the micron and millisecond range. Light can also be used to activate brain tissue by using “caged” neurotransmitters and second messengers, and, more recently, by using light-sensitive ion channels, pumps, and receptors to allow optogenetic activation.

A high-throughput method for generating uniform microislands for autaptic neuronal cultures

Generating microislands of culture substrate on coverslips by spray application of poly-d lysine is a commonly used method for culturing isolated neurons that form self (autaptic) synapses. This preparation has multiple advantages for studying synaptic transmission in isolation; however, generating microislands by spraying produces islands of non-uniform size and thus cultures vary widely in the number of islands containing single neurons. To address these problems, we developed a high-throughput method for reliably generating uniformly shaped microislands of culture substrate. Stamp molds formed of poly(dimethylsiloxane) (PDMS) were fabricated with arrays of circles and used to generate stamps made of 9.2% agarose. The agarose stamps were capable of loading sufficient poly D-lysine and collagen dissolved in acetic acid to rapidly generate coverslips containing at least 64 microislands per coverslip. When hippocampal neurons were cultured on these coverslips, there were significantly more single-neuron islands per coverslip. We noted that single neurons tended to form one of three distinct neurite-arbor morphologies, which varied with island size and the location of the cell body on the island. To our surprise, the number of synapses per autaptic neuron did not correlate with arbor shape or island size, suggesting that other factors regulate the number of synapses formed by isolated neurons. The stamping method we report can be used to increase the number of single-neuron islands per culture and aid in the rapid visualization of microislands.

Organic electro-optic glasses for WDM applications

This communication primarily deals with utilizing organic electro-optic (OEO) materials for the fabrication of active wavelength division multiplexing (WDM) transmitter/receiver systems and reconfigurable optical add/drop multiplexers (ROADMs), including the fabrication of hybrid OEO/silicon photonic devices. Fabrication is carried out by a variety of techniques including soft and nanoimprint lithography. The production of conformal and flexible ring microresonator devices is also discussed. The fabrication of passive devices is also briefly reviewed. Critical to the realization of improved performance for devices fabricated from OEO materials has been the improvement of electro-optic activity to values of 300 pm/V (or greater) at telecommunication wavelengths. This improvement in materials has been realized exploiting a theoretically-inspired (quantum and statistical mechanics) paradigm for the design of chromophores with dramatically improved molecular first hyperpolarizability and that exhibit intermolecular electrostatic interactions that promote self-assembly, under the influence of an electric poling field, into noncentrosymmetric macroscopic lattices. New design paradigms have also been developed for improving the glass transition of these materials, which is critical for thermal and photochemical stability and for optimizing processing protocols such as nanoimprint lithography. Ring microresonator devices discussed in this communication were initially fabricated using chromophore guest/polymer host materials characterized by electro-optic coefficients on the order of 50 pm/V (at telecommunication wavelengths). Voltage-controlled optical tuning of the pass band of these ring microresonators was experimental determined to lie in the range 1-10 GHz/V or all-organic and for OEO/silicon photonic devices. With new materials, values approaching 50 GHz/V should be possible. Values as high as 300 GHz/V may ultimately be achievable.