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Dive into the research topics where Amber L. Simpson is active.

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Featured researches published by Amber L. Simpson.


Journal of The American College of Surgeons | 2014

Liver Planning Software Accurately Predicts Postoperative Liver Volume and Measures Early Regeneration

Amber L. Simpson; David A. Geller; Alan W. Hemming; William R. Jarnagin; Logan W. Clements; Michael I. D’Angelica; Prashanth Dumpuri; Mithat Gonen; Ivan Zendejas; Michael I. Miga; James D. Stefansic

BACKGROUND Postoperative or remnant liver volume (RLV) after hepatic resection is a critical predictor of perioperative outcomes. This study investigates whether the accuracy of liver surgical planning software for predicting postoperative RLV and assessing early regeneration. STUDY DESIGN Patients eligible for hepatic resection were approached for participation in the study from June 2008 to 2010. All patients underwent cross-sectional imaging (CT or MRI) before and early after resection. Planned remnant liver volume (pRLV) (based on the planned resection on the preoperative scan) and postoperative actual remnant liver volume (aRLV) (determined from early postoperative scan) were measured using Scout Liver software (Pathfinder Therapeutics Inc.). Differences between pRLV and aRLV were analyzed, controlling for timing of postoperative imaging. Measured total liver volume (TLV) was compared with standard equations for calculating volume. RESULTS Sixty-six patients were enrolled in the study from June 2008 to June 2010 at 3 treatment centers. Correlation was found between pRLV and aRLV (r = 0.941; p < 0.001), which improved when timing of postoperative imaging was considered (r = 0.953; p < 0.001). Relative volume deviation from pRLV to aRLV stratified cases according to timing of postoperative imaging showed evidence of measurable regeneration beginning 5 days after surgery, with stabilization at 8 days (p < 0.01). For patients at the upper and lower extremes of liver volumes, TLV was poorly estimated using standard equations (up to 50% in some cases). CONCLUSIONS Preoperative virtual planning of future liver remnant accurately predicts postoperative volume after hepatic resection. Early postoperative liver regeneration is measureable on imaging beginning at 5 days after surgery. Measuring TLV directly from CT scans rather than calculating based on equations accounts for extremes in TLV.


Journal of The American College of Surgeons | 2014

Remnant growth rate after portal vein embolization is a good early predictor of post-hepatectomy liver failure

Universe Leung; Amber L. Simpson; Raphael L.C. Araujo; Mithat Gonen; Conor McAuliffe; Michael I. Miga; E. Patricia Parada; Peter J. Allen; Michael I. D’Angelica; T. Peter Kingham; Ronald P. DeMatteo; Yuman Fong; William R. Jarnagin

BACKGROUND After portal vein embolization (PVE), the future liver remnant (FLR) hypertrophies for several weeks. An early marker that predicts a low risk of post-hepatectomy liver failure can reduce the delay to surgery. STUDY DESIGN Liver volumes of 153 patients who underwent a major hepatectomy (>3 segments) after PVE for primary or secondary liver malignancy between September 1999 and November 2012 were retrospectively evaluated with computerized volumetry. Pre- and post-PVE FLR volume and functional liver volume were measured. Degree of hypertrophy (DH = post-FLR/post-functional liver volume - pre-FLR/pre-functional liver volume) and growth rate (GR = DH/weeks since PVE) were calculated. Postoperative complications and liver failure were correlated with DH, measured GR, and estimated GR derived from a formula based on body surface area. RESULTS Eligible patients underwent 93 right hepatectomies, 51 extended right hepatectomies, 4 left hepatectomies, and 5 extended left hepatectomies. Major complications occurred in 44 patients (28.7%) and liver failure in 6 patients (3.9%). Nonparametric regression showed that post-embolization FLR percent correlated poorly with liver failure. Receiver operating characteristic curves showed that DH and GR were good predictors of liver failure (area under the curve [AUC] = 0.80; p = 0.011 and AUC = 0.79; p = 0.015) and modest predictors of major complications (AUC = 0.66; p = 0.002 and AUC = 0.61; p = 0.032). No patient with GR >2.66% per week had liver failure develop. The predictive value of measured GR was superior to estimated GR for liver failure (AUC = 0.79 vs 0.58; p = 0.046). CONCLUSIONS Both DH and GR after PVE are strong predictors of post-hepatectomy liver failure. Growth rate might be a better guide for the optimum timing of liver resection than static volumetric measurements. Measured volumetrics correlated with outcomes better than estimated volumetrics.


IEEE Transactions on Medical Imaging | 2014

A Mechanics-Based Nonrigid Registration Method for Liver Surgery Using Sparse Intraoperative Data

D. Caleb Rucker; Yifei Wu; Logan W. Clements; Janet E. Ondrake; Thomas S. Pheiffer; Amber L. Simpson; William R. Jarnagin; Michael I. Miga

In open abdominal image-guided liver surgery, sparse measurements of the organ surface can be taken intraoperatively via a laser-range scanning device or a tracked stylus with relatively little impact on surgical workflow. We propose a novel nonrigid registration method which uses sparse surface data to reconstruct a mapping between the preoperative CT volume and the intraoperative patient space. The mapping is generated using a tissue mechanics model subject to boundary conditions consistent with surgical supportive packing during liver resection therapy. Our approach iteratively chooses parameters which define these boundary conditions such that the deformed tissue model best fits the intraoperative surface data. Using two liver phantoms, we gathered a total of five deformation datasets with conditions comparable to open surgery. The proposed nonrigid method achieved a mean target registration error (TRE) of 3.3 mm for targets dispersed throughout the phantom volume, using a limited region of surface data to drive the nonrigid registration algorithm, while rigid registration resulted in a mean TRE of 9.5 mm. In addition, we studied the effect of surface data extent, the inclusion of subsurface data, the trade-offs of using a nonlinear tissue model, robustness to rigid misalignments, and the feasibility in five clinical datasets.


IEEE Transactions on Biomedical Engineering | 2013

Comparison Study of Intraoperative Surface Acquisition Methods for Surgical Navigation

Amber L. Simpson; Jessica Burgner; Courtenay L. Glisson; Stanley Duke Herrell; Burton Ma; Thomas S. Pheiffer; Robert J. Webster; Michael I. Miga

Soft-tissue image-guided interventions often require the digitization of organ surfaces for providing correspondence from medical images to the physical patient in the operating room. In this paper, the effect of several inexpensive surface acquisition techniques on target registration error and surface registration error (SRE) for soft tissue is investigated. A systematic approach is provided to compare image-to-physical registrations using three different methods of organ spatial digitization: 1) a tracked laser-range scanner (LRS), 2) a tracked pointer, and 3) a tracked conoscopic holography sensor (called a conoprobe). For each digitization method, surfaces of phantoms and biological tissues were acquired and registered to CT image volume counterparts. A comparison among these alignments demonstrated that registration errors were statistically smaller with the conoprobe than the tracked pointer and LRS ( p <; 0.01). In all acquisitions, the conoprobe outperformed the LRS and tracked pointer: for example, the arithmetic means of the SRE over all data acquisitions with a porcine liver were 1.73 ±0.77 mm, 3.25 ±0.78 mm, and 4.44 ±1.19 mm for the conoprobe, LRS, and tracked pointer, respectively. In a cadaveric kidney specimen, the arithmetic means of the SRE over all trials of the conoprobe and tracked pointer were 1.50 ±0.50 mm and 3.51 ±0.82 mm, respectively. Our results suggest that tissue displacements due to contact force and attempts to maintain contact with tissue, compromise registrations that are dependent on data acquired from a tracked surgical instrument and we provide an alternative method (tracked conoscopic holography) of digitizing surfaces for clinical usage. The tracked conoscopic holography device outperforms LRS acquisitions with respect to registration accuracy.


IEEE Journal of Translational Engineering in Health and Medicine | 2014

Near Real-Time Computer Assisted Surgery for Brain Shift Correction Using Biomechanical Models

Kay Sun; Thomas S. Pheiffer; Amber L. Simpson; Jared A. Weis; Reid C. Thompson; Michael I. Miga

Conventional image-guided neurosurgery relies on preoperative images to provide surgical navigational information and visualization. However, these images are no longer accurate once the skull has been opened and brain shift occurs. To account for changes in the shape of the brain caused by mechanical (e.g., gravity-induced deformations) and physiological effects (e.g., hyperosmotic drug-induced shrinking, or edema-induced swelling), updated images of the brain must be provided to the neuronavigation system in a timely manner for practical use in the operating room. In this paper, a novel preoperative and intraoperative computational processing pipeline for near real-time brain shift correction in the operating room was developed to automate and simplify the processing steps. Preoperatively, a computer model of the patients brain with a subsequent atlas of potential deformations due to surgery is generated from diagnostic image volumes. In the case of interim gross changes between diagnosis, and surgery when reimaging is necessary, our preoperative pipeline can be generated within one day of surgery. Intraoperatively, sparse data measuring the cortical brain surface is collected using an optically tracked portable laser range scanner. These data are then used to guide an inverse modeling framework whereby full volumetric brain deformations are reconstructed from precomputed atlas solutions to rapidly match intraoperative cortical surface shift measurements. Once complete, the volumetric displacement field is used to update, i.e., deform, preoperative brain images to their intraoperative shifted state. In this paper, five surgical cases were analyzed with respect to the computational pipeline and workflow timing. With respect to postcortical surface data acquisition, the approximate execution time was 4.5 min. The total update process which included positioning the scanner, data acquisition, inverse model processing, and image deforming was ~ 11-13 min. In addition, easily implemented hardware, software, and workflow processes were identified for improved performance in the near future.


IEEE Transactions on Biomedical Engineering | 2011

Tracking of Vessels in Intra-Operative Microscope Video Sequences for Cortical Displacement Estimation

Siyi Ding; Michael I. Miga; Thomas S. Pheiffer; Amber L. Simpson; Reid C. Thompson; Benoit M. Dawant

This article presents a method designed to automatically track cortical vessels in intra-operative microscope video sequences. The main application of this method is the estimation of cortical displacement that occurs during tumor resection procedures. The method works in three steps. First, models of vessels selected in the first frame of the sequence are built. These models are then used to track vessels across frames in the video sequence. Finally, displacements estimated using the vessels are extrapolated to the entire image. The method has been tested retrospectively on images simulating large displacement, tumor resection, and partial occlusion by surgical instruments and on 21 video sequences comprising several thousand frames acquired from three patients. Qualitative results show that the method is accurate, robust to the appearance and disappearance of surgical instruments, and capable of dealing with large differences in images caused by resection. Quantitative results show a mean vessel tracking error (VTE) of 2.4 pixels (0.3 or 0.6 mm, depending on the spatial resolution of the images) and an average target registration error (TRE) of 3.3 pixels (0.4 or 0.8 mm).


Medical Physics | 2012

Design and evaluation of an optically-tracked single-CCD laser range scanner.

Thomas S. Pheiffer; Amber L. Simpson; Brian Lennon; Reid C. Thompson; Michael I. Miga

PURPOSE Acquisition of laser range scans of an organ surface has the potential to efficiently provide measurements of geometric changes to soft tissue during a surgical procedure. A laser range scanner design is reported here which has been developed to drive intraoperative updates to conventional image-guided neurosurgery systems. METHODS The scanner is optically-tracked in the operating room with a multiface passive target. The novel design incorporates both the capture of surface geometry (via laser illumination) and color information (via visible light collection) through a single-lens onto the same charge-coupled device (CCD). The accuracy of the geometric data was evaluated by scanning a high-precision phantom and comparing relative distances between landmarks in the scans with the corresponding ground truth (known) distances. The range-of-motion of the scanner with respect to the optical camera was determined by placing the scanner in common operating room configurations while sampling the visibility of the reflective spheres. The tracking accuracy was then analyzed by fixing the scanner and phantom in place, perturbing the optical camera around the scene, and observing variability in scan locations with respect to a tracked pen probe ground truth as the camera tracked the same scene from different positions. RESULTS The geometric accuracy test produced a mean error and standard deviation of 0.25 ± 0.40 mm with an RMS error of 0.47 mm. The tracking tests showed that the scanner could be tracked at virtually all desired orientations required in the OR set up, with an overall tracking error and standard deviation of 2.2 ± 1.0 mm with an RMS error of 2.4 mm. There was no discernible difference between any of the three faces on the lasers range scanner (LRS) with regard to tracking accuracy. CONCLUSIONS A single-lens laser range scanner design was successfully developed and implemented with sufficient scanning and tracking accuracy for image-guided surgery.


medical image computing and computer assisted intervention | 2006

Using registration uncertainty visualization in a user study of a simple surgical task

Amber L. Simpson; Burton Ma; Elvis C. S. Chen; Randy E. Ellis; A. James Stewart

We present a novel method to visualize registration uncertainty and a simple study to motivate the use of uncertainty visualization in computer-assisted surgery. Our visualization method resulted in a statistically significant reduction in the number of attempts required to localize a target, and a statistically significant reduction in the number of targets that our subjects failed to localize. Most notably, our work addresses the existence of uncertainty in guidance and offers a first step towards helping surgeons make informed decisions in the presence of imperfect data.


IEEE Transactions on Biomedical Engineering | 2014

Evaluation of Conoscopic Holography for Estimating Tumor Resection Cavities in Model-Based Image-Guided Neurosurgery

Amber L. Simpson; Kay Sun; Thomas S. Pheiffer; D. Caleb Rucker; Allen K. Sills; Reid C. Thompson; Michael I. Miga

Surgical navigation relies on accurately mapping the intraoperative state of the patient to models derived from preoperative images. In image-guided neurosurgery, soft tissue deformations are common and have been shown to compromise the accuracy of guidance systems. In lieu of whole-brain intraoperative imaging, some advocate the use of intraoperatively acquired sparse data from laser-range scans, ultrasound imaging, or stereo reconstruction coupled with a computational model to drive subsurface deformations. Some authors have reported on compensating for brain sag, swelling, retraction, and the application of pharmaceuticals such as mannitol with these models. To date, strategies for modeling tissue resection have been limited. In this paper, we report our experiences with a novel digitization approach, called a conoprobe, to document tissue resection cavities and assess the impact of resection on model-based guidance systems. Specifically, the conoprobe was used to digitize the interior of the resection cavity during eight brain tumor resection surgeries and then compared against model prediction results of tumor locations. We should note that no effort was made to incorporate resection into the model but rather the objective was to determine if measurement was possible to study the impact on modeling tissue resection. In addition, the digitized resection cavity was compared with early postoperative MRI scans to determine whether these scans can further inform tissue resection. The results demonstrate benefit in model correction despite not having resection explicitly modeled. However, results also indicate the challenge that resection provides for model-correction approaches. With respect to the digitization technology, it is clear that the conoprobe provides important real-time data regarding resection and adds another dimension to our noncontact instrumentation framework for soft-tissue deformation compensation in guidance systems.


Archive | 2012

Model-Assisted Image-Guided Liver Surgery Using Sparse Intraoperative Data

Amber L. Simpson; Prashanth Dumpuri; William R. Jarnagin; Michael I. Miga

This chapter examines the application of intraoperatively acquired sparse data to model-assisted image-guided liver surgery. The results suggest intraoperative deformation correction from computer models and sparse data to be considerable. This is an important step in the translation of image-guided surgery techniques to the abdomen. Moreover, the algorithms explored are a cost-effective solution that potentially improves the application of surgery, is widely adoptable, and is relatively easy to integrate into current surgical workflow practices. While continued investigation towards improvement is needed, these do represent beneficial advances that can affect the clinical application of surgery today.

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William R. Jarnagin

Memorial Sloan Kettering Cancer Center

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Richard K. G. Do

Memorial Sloan Kettering Cancer Center

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Peter J. Allen

Memorial Sloan Kettering Cancer Center

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Mithat Gonen

Memorial Sloan Kettering Cancer Center

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T. Peter Kingham

Memorial Sloan Kettering Cancer Center

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Jayasree Chakraborty

Memorial Sloan Kettering Cancer Center

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Ronald P. DeMatteo

Memorial Sloan Kettering Cancer Center

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Linda M. Pak

Memorial Sloan Kettering Cancer Center

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