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Dive into the research topics where Amber Woolfenden is active.

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Featured researches published by Amber Woolfenden.


Cell | 2005

Identification of Bronchioalveolar Stem Cells in Normal Lung and Lung Cancer

Carla F. Kim; Erica L. Jackson; Amber Woolfenden; Sharon Lawrence; Imran Babar; Sinae Vogel; Denise Crowley; Roderick T. Bronson; Tyler Jacks

Injury models have suggested that the lung contains anatomically and functionally distinct epithelial stem cell populations. We have isolated such a regional pulmonary stem cell population, termed bronchioalveolar stem cells (BASCs). Identified at the bronchioalveolar duct junction, BASCs were resistant to bronchiolar and alveolar damage and proliferated during epithelial cell renewal in vivo. BASCs exhibited self-renewal and were multipotent in clonal assays, highlighting their stem cell properties. Furthermore, BASCs expanded in response to oncogenic K-ras in culture and in precursors of lung tumors in vivo. These data support the hypothesis that BASCs are a stem cell population that maintains the bronchiolar Clara cells and alveolar cells of the distal lung and that their transformed counterparts give rise to adenocarcinoma. Although bronchiolar cells and alveolar cells are proposed to be the precursor cells of adenocarcinoma, this work points to BASCs as the putative cells of origin for this subtype of lung cancer.


Cell Stem Cell | 2010

Primary tumor genotype is an important determinant in identification of lung cancer propagating cells.

Stephen Curtis; Kerstin W. Sinkevicius; Danan Li; Allison N. Lau; Rebecca R. Roach; Raffaella Zamponi; Amber Woolfenden; David G. Kirsch; Kwok-Kin Wong; Carla F. Kim

Successful cancer therapy requires the elimination or incapacitation of all tumor cells capable of regenerating a tumor. Therapeutic advances therefore necessitate the characterization of the cells that are able to propagate a tumor in vivo. We show an important link between tumor genotype and isolation of tumor-propagating cells (TPCs). Three mouse models of the most common form of human lung cancer each had TPCs with a unique cell-surface phenotype. The cell-surface marker Sca1 did not enrich for TPCs in tumors initiated with oncogenic Kras, and only Sca1-negative cells propagated EGFR mutant tumors. In contrast, Sca1-positive cells were enriched for tumor-propagating activity in Kras tumors with p53 deficiency. Primary tumors that differ in genotype at just one locus can therefore have tumor-propagating cell populations with distinct markers. Our studies show that the genotype of tumor samples must be considered in studies to identify, characterize, and target tumor-propagating cells.


American Journal of Physiology-lung Cellular and Molecular Physiology | 2008

Cellular kinetics and modeling of bronchioalveolar stem cell response during lung regeneration.

Rose Nolen-Walston; Carla F. Kim; Melissa R. Mazan; Edward P. Ingenito; Alisha M. Gruntman; Larry W. Tsai; Raymond C. Boston; Amber Woolfenden; Tyler Jacks; A. M. Hoffman

Organ regeneration in mammals is hypothesized to require a functional pool of stem or progenitor cells, but the role of these cells in lung regeneration is unknown. Whereas postnatal regeneration of alveolar tissue has been attributed to type II alveolar epithelial cells (AECII), we reasoned that bronchioalveolar stem cells (BASCs) have the potential to contribute substantially to this process. To test this hypothesis, unilateral pneumonectomy (PNX) was performed on adult female C57/BL6 mice to stimulate compensatory lung regrowth. The density of BASCs and AECII, and morphometric and physiological measurements, were recorded on days 1, 3, 7, 14, 28, and 45 after surgery. Vital capacity was restored by day 7 after PNX. BASC numbers increased by day 3, peaked to 220% of controls (P<0.05) by day 14, and then returned to baseline after active lung regrowth was complete, whereas AECII cell densities increased to 124% of baseline (N/S). Proliferation studies revealed significant BrdU uptake in BASCs and AECII within the first 7 days after PNX. Quantitative analysis using a systems biology model was used to evaluate the potential contribution of BASCs and AECII. The model demonstrated that BASC proliferation and differentiation contributes between 0 and 25% of compensatory alveolar epithelial (type I and II cell) regrowth, demonstrating that regeneration requires a substantial contribution from AECII. The observed cell kinetic profiles can be reconciled using a dual-compartment (BASC and AECII) proliferation model assuming a linear hierarchy of BASCs, AECII, and AECI cells to achieve lung regrowth.


Investigative Ophthalmology & Visual Science | 2014

Reliability of the mouse model of choroidal neovascularization induced by laser photocoagulation.

Stephen Poor; Yubin Qiu; Elizabeth Fassbender; Siyuan Shen; Amber Woolfenden; Andrea Delpero; Yong Kim; Natasha Buchanan; Thomas C. Gebuhr; Shawn Hanks; Erik Meredith; Bruce D Jaffee; Thaddeus P. Dryja

PURPOSE We attempted to reproduce published studies that evaluated whether the following factors influence choroidal neovascularization (CNV) induced by laser photocoagulation in murine retinas: small interfering RNA (siRNA), cobra venom factor, complement factors C3 and C5, and complement receptor C5aR. In addition, we explored whether laser-induced CNV in mice was influenced by the vendor of origin of the animals. METHODS Reagents or genotypes reported by others to influence CNV in this model were assessed using our standard procedures. Retrospective analyses of control or placebo mice in many experiments were done to evaluate whether the CNV area induced by laser photocoagulation varied according to vendor. RESULTS Administration of the following agents did not have a substantial impact on the CNV induced by laser burns in mice: siRNA, low-molecular-weight inhibitor of the C5a receptor (PMX53), or cobra venom factor. Jackson Laboratory (JAX) mice lacking either C3 or C5 had increased neovascularization compared to non-littermate JAX wild-type controls. Taconic mice lacking C3 had reduced CNV compared to non-littermate Taconic wild-type control mice. A retrospective analysis of vehicle-treated wild-type C57BL/6 mice used as controls across 132 experiments conducted from 2007 to 2010 revealed that mice purchased from JAX or from Charles River produced less neovascularization than mice from Taconic. CONCLUSIONS We present our recommended methods for conducting experiments with the mouse laser-induced CNV model to enhance reproducibility and minimize investigator bias.


Journal of Biological Chemistry | 2011

Pharmacologic Uncoupling of Angiogenesis and Inflammation during Initiation of Pathological Corneal Neovascularization

Jeremy M. Sivak; Allison C. Ostriker; Amber Woolfenden; John T. Demirs; Rosemarie Cepeda; Debby Long; Karen S. Anderson; Bruce Jaffee

Background: The mechanism initiating pathological corneal neovascularization (CoNV) remains unclear. Results: After injury, substantial CoNV occurs during an initial, VEGFR-2-dependent phase, prior to influence from inflammatory cells. Conclusion: Pathological CoNV can be pharmacologically uncoupled from inflammatory cell recruitment and may be coordinated by VEGF from repair epithelial cells. Significance: This work reveals a window in which angiogenesis and inflammation can be selectively targeted during injury repair. Pathological neovascularization occurs when a balance of pro- and anti-angiogenic factors is disrupted, accompanied by an amplifying inflammatory cascade. However, the interdependence of these responses and the mechanism triggering the initial angiogenic switch have remained unclear. We present data from an epithelial debridement model of corneal neovascularization describing an initial 3-day period when a substantial component of neovascular growth occurs. Administration of selective inhibitors shows that this initial growth requires signaling through VEGFR-2 (vascular endothelial growth factor receptor-2), independent of the accompanying inflammatory response. Instead, increased VEGF production is found prominently in repair epithelial cells and is increased prior to recruitment of neutrophil/granulocytes and macrophage/monocytes. Consequently, early granulocyte and monocyte depletion has little effect on corneal neovascularization outgrowth. These data indicate that it is possible to pharmacologically uncouple these mechanisms during early injury-driven neovascularization in the cornea and suggest that initial tissue responses are coordinated by repair epithelial cells.


Journal of Medicinal Chemistry | 2015

Discovery of Oral VEGFR-2 Inhibitors with Prolonged Ocular Retention That Are Efficacious in Models of Wet Age-Related Macular Degeneration

Erik Meredith; Nello Mainolfi; Stephen Poor; Yubin Qiu; Karl Miranda; James C. Powers; Donglei Liu; Fupeng Ma; Catherine Solovay; Chang Rao; Leland Johnson; Nan Ji; Gerald Artman; Leo Hardegger; Shawn Hanks; Siyuan Shen; Amber Woolfenden; Elizabeth Fassbender; Jeremy M. Sivak; Yiqin Zhang; Debby Long; Rosemarie Cepeda; Fang Liu; Vinayak Hosagrahara; Wendy Lee; Peter Tarsa; Karen S. Anderson; Jason Matthew Elliott; Bruce Jaffee

The benefit of intravitreal anti-VEGF therapy in treating wet age-related macular degeneration (AMD) is well established. Identification of VEGFR-2 inhibitors with optimal ADME properties for an ocular indication provides opportunities for dosing routes beyond intravitreal injection. We employed a high-throughput in vivo screening strategy with rodent models of choroidal neovascularization and iterative compound design to identify VEGFR-2 inhibitors with potential to benefit wet AMD patients. These compounds demonstrate preferential ocular tissue distribution and efficacy after oral administration while minimizing systemic exposure.


PLOS ONE | 2014

Lack of Involvement of CEP Adducts in TLR Activation and in Angiogenesis

John S. Gounarides; Jennifer Cobb; Jing Zhou; Frank Cook; Xuemei Yang; Hong Yin; Erik Meredith; Chang Rao; Qian Huang; YongYao Xu; Karen Anderson; Andrea De Erkenez; Sha-Mei Liao; Maura Crowley; Natasha Buchanan; Stephen Poor; Yubin Qiu; Elizabeth Fassbender; Siyuan Shen; Amber Woolfenden; Amy Jensen; Rosemarie Cepeda; Bijan Etemad-Gilbertson; Shelby Giza; Muneto Mogi; Bruce D Jaffee; Sassan Azarian

Proteins that are post-translationally adducted with 2-(ω-carboxyethyl)pyrrole (CEP) have been proposed to play a pathogenic role in age-related macular degeneration, by inducing angiogenesis in a Toll Like Receptor 2 (TLR2)-dependent manner. We have investigated the involvement of CEP adducts in angiogenesis and TLR activation, to assess the therapeutic potential of inhibiting CEP adducts and TLR2 for ocular angiogenesis. As tool reagents, several CEP-adducted proteins and peptides were synthetically generated by published methodology and adduction was confirmed by NMR and LC-MS/MS analyses. Structural studies showed significant changes in secondary structure in CEP-adducted proteins but not the untreated proteins. Similar structural changes were also observed in the treated unadducted proteins, which were treated by the same adduction method except for one critical step required to form the CEP group. Thus some structural changes were unrelated to CEP groups and were artificially induced by the synthesis method. In biological studies, the CEP-adducted proteins and peptides failed to activate TLR2 in cell-based assays and in an in vivo TLR2-mediated retinal leukocyte infiltration model. Neither CEP adducts nor TLR agonists were able to induce angiogenesis in a tube formation assay. In vivo, treatment of animals with CEP-adducted protein had no effect on laser-induced choroidal neovascularization. Furthermore, in vivo inactivation of TLR2 by deficiency in Myeloid Differentiation factor 88 (Myd88) had no effect on abrasion-induced corneal neovascularization. Thus the CEP-TLR2 axis, which is implicated in other wound angiogenesis models, does not appear to play a pathological role in a corneal wound angiogenesis model. Collectively, our data do not support the mechanism of action of CEP adducts in TLR2-mediated angiogenesis proposed by others.


Journal of Medicinal Chemistry | 2018

The Discovery of N-(1-Methyl-5-(trifluoromethyl)-1H-pyrazol-3-yl)-5-((6- ((methylamino)methyl)pyrimidin-4-yl)oxy)-1H-indole-1-carboxamide (Acrizanib), a VEGFR-2 Inhibitor Specifically Designed for Topical Ocular Delivery, as a Therapy for Neovascular Age-Related Macular Degeneration

Christopher Michael Adams; Karen Anderson; Gerald Artman; Jean-Claude Bizec; Rosemarie Cepeda; Jason Elliott; Elizabeth Fassbender; Malay Ghosh; Shawn Hanks; Leo Hardegger; Vinayak P. Hosagrahara; Bruce D Jaffee; Keith Jendza; Nan Ji; Leland Johnson; Wendy Lee; Donglei Liu; Fang Liu; Debby Long; Fupeng Ma; Nello Mainolfi; Erik Meredith; Karl Miranda; Yao Peng; Stephen Poor; James J. Powers; Yubin Qiu; Chang Rao; Siyuan Shen; Jeremy M. Sivak


Investigative Ophthalmology & Visual Science | 2015

Weekly oral delivery of a vascular endothelial growth factor receptor (VEGFR) inhibitor compound optimized for ocular exposure improves safety and maintains efficacy compared to daily dosing

Yubin Qiu; Siyuan Shen; Elizabeth Fassbender; Amber Woolfenden; Debby Long; Ron Newton; Erik Meredith; Bruce D Jaffee; Stephen Poor


Investigative Ophthalmology & Visual Science | 2015

A vascular endothelial growth factor receptor inhibitor (VEGFRi) achieves topical efficacy in rat and monkey models of choroidal neovascularization (CNV)

Stephen Poor; Yubin Qiu; Amber Woolfenden; Debby Long; Christopher Michael Adams; Jason Elliott; Vinayak P. Hosagrahara; Jeremy M. Sivak; Bruce D Jaffee

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