Amelia S. Wenger

A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniques

Increased loads of land-based pollutants are a major threat to coastal-marine ecosystems. Identifying the affected marine areas and the scale of influence on ecosystems is critical to assess the impacts of degraded water quality and to inform planning for catchment management and marine conservation. Studies using remotely-sensed data have contributed to our understanding of the occurrence and influence of river plumes, and to our ability to assess exposure of marine ecosystems to land-based pollutants. However, refinement of plume modeling techniques is required to improve risk assessments. We developed a novel, complementary, approach to model exposure of coastal-marine ecosystems to land-based pollutants. We used supervised classification of MODIS-Aqua true-color satellite imagery to map the extent of plumes and to qualitatively assess the dispersal of pollutants in plumes. We used the Great Barrier Reef (GBR), the worlds largest coral reef system, to test our approach. We combined frequency of plume occurrence with spatially distributed loads (based on a cost-distance function) to create maps of exposure to suspended sediment and dissolved inorganic nitrogen. We then compared annual exposure maps (2007-2011) to assess inter-annual variability in the exposure of coral reefs and seagrass beds to these pollutants. We found this method useful to map plumes and qualitatively assess exposure to land-based pollutants. We observed inter-annual variation in exposure of ecosystems to pollutants in the GBR, stressing the need to incorporate a temporal component into plume exposure/risk models. Our study contributes to our understanding of plume spatial-temporal dynamics of the GBR and offers a method that can also be applied to monitor exposure of coastal-marine ecosystems to plumes and explore their ecological influences.

Climate change and the performance of larval coral reef fishes: the interaction between temperature and food availability

We tested the impacts of temperature and variable food availability on the development and metabolic rate of the larvae of a coral reef damselfish, Amphiprion percula. Our results suggest that larval fishes will be severely impacted, both independently and synergistically, by climate-change related elevated temperatures and reductions in food supply.

Suspended sediment prolongs larval development in a coral reef fish

Increasing sediment input into coastal environments is having a profound influence on shallow marine habitats and associated species. Coral reef ecosystems appear to be particularly sensitive, with increased sediment deposition and re-suspension being associated with declines in the abundance and diversity of coral reef fishes. While recent research has demonstrated that suspended sediment can have negative impacts on post-settlement coral reef fishes, its effect on larval development has not been investigated. In this study, we tested the effects of different levels of suspended sediment on larval growth and development time in Amphiprion percula, a coral reef damselfish. Larvae were subjected to four experimental concentrations of suspended sediment spanning the range found around coastal coral reefs (0–45 mg l−1). Larval duration was significantly longer in all sediment treatments (12 days) compared with the average larval duration in the control treatment (11 days). Approximately 75% of the fish in the control had settled by day 11, compared with only 40–46% among the sediment treatments. In the highest sediment treatment, some individuals had a larval duration twice that of the median duration in the control treatment. Unexpectedly, in the low sediment treatment, fish at settlement were significantly longer and heavier compared with fish in the other treatments, suggesting delayed development was independent of individual condition. A sediment-induced extension of the pelagic larval stage could significantly reduce numbers of larvae competent to settle and, in turn, have major effects on adult population dynamics.

Exposure of clownfish larvae to suspended sediment levels found on the Great Barrier Reef: impacts on gill structure and microbiome

Worldwide, increasing coastal development has played a major role in shaping coral reef species assemblages, but the mechanisms underpinning distribution patterns remain poorly understood. Recent research demonstrated delayed development in larval fishes exposed to suspended sediment, highlighting the need to further understand the interaction between suspended sediment as a stressor and energetically costly activities such as growth and development that are essential to support biological fitness. We examined the gill morphology and the gill microbiome in clownfish larvae (Amphiprion percula) exposed to suspended sediment concentrations (using Australian bentonite) commonly found on the inshore Great Barrier Reef. The gills of larvae exposed to 45 mg L−1 of suspended sediment had excessive mucous discharge and growth of protective cell layers, resulting in a 56% thicker gill epithelium compared to fish from the control group. Further, we found a shift from ‘healthy’ to pathogenic bacterial communities on the gills, which could increase the disease susceptibility of larvae. The impact of suspended sediments on larval gills may represent an underlying mechanism behind the distribution patterns of fish assemblages. Our findings underscore the necessity for future coastal development to consider adverse effects of suspended sediments on fish recruitment, and consequently fish populations and ecosystem health.

Effects of reduced water quality on coral reefs in and out of no‐take marine reserves

Near-shore marine environments are increasingly subjected to reduced water quality, and their ability to withstand it is critical to their persistence. The potential role marine reserves may play in mitigating the effects of reduced water quality has received little attention. We investigated the spatial and temporal variability in live coral and macro-algal cover and water quality during moderate and major flooding events of the Fitzroy River within the Keppel Bay region of the Great Barrier Reef Marine Park from 2007 to 2013. We used 7 years of remote sensing data on water quality and data from long-term monitoring of coral reefs to quantify exposure of coral reefs to flood plumes. We used a distance linear model to partition the contribution of abiotic and biotic factors, including zoning, as drivers of the observed changes in coral and macro-algae cover. Moderate flood plumes from 2007 to 2009 did not affect coral cover on reefs in the Keppel Islands, suggesting the reef has intrinsic resistance against short-term exposure to reduced water quality. However, from 2009 to 2013, live coral cover declined by ∼ 50% following several weeks of exposure to turbid, low salinity water from major flood plume events in 2011 and subsequent moderate events in 2012 and 2013. Although the flooding events in 2012 and 2013 were smaller than the flooding events between 2007 to 2009, the ability of the reefs to withstand these moderate floods was lost, as evidenced by a ∼ 20% decline in coral cover between 2011 to 2013. Although zoning (no-take reserve or fished) was identified a significant driver of coral cover, we recorded consistently lower coral cover on reserve reefs than on fished reefs throughout the study period and significantly lower cover in 2011. Our findings suggest that even reefs with an inherent resistance to reduced water quality are not able to withstand repeated disturbance events. The limitations of reserves in mitigating the effects of reduced water quality on near-shore coral reefs underscores the importance of integrated management approaches that combine effective land-based management with networks of no-take reserves.

Using MODIS data for mapping of water types within river plumes in the Great Barrier Reef, Australia: Towards the production of river plume risk maps for reef and seagrass ecosystems

River plumes are the major transport mechanism for nutrients, sediments and other land-based pollutants into the Great Barrier Reef (GBR, Australia) and are a major threat to coastal and marine ecosystems such as coral reefs and seagrass beds. Understanding the spatial extent, frequency of occurrence, loads and ecological impacts of land-based pollutants discharged through river plumes is essential to drive catchment management actions. In this study, a framework to produce river plume risk maps for seagrass and coral ecosystems, using supervised classification of MODIS Level 2 (L2) satellite products, is presented. Based on relevant L2 thresholds, river plumes are classified into Primary, Secondary, and Tertiary water types, which represent distinct water quality (WQ) parameters concentrations and combinations. Annual water type maps are produced over three wet seasons (2010-2013) as a case of study. These maps provide a synoptic basis to assess the likelihood and magnitude of the risk of reduced coastal WQ associated with the river discharge (river plume risk) and in combination with sound knowledge of the regional ecosystems can serve as the basis to assess potential ecological impacts for coastal and marine GBR ecosystems. The methods described herein provide relevant and easily reproducible large-scale information for river plume risk assessment and management.

Reserves as tools for alleviating impacts of marine disease

Marine protected areas can prevent over-exploitation, but their effect on marine diseases is less clear. We examined how marine reserves can reduce diseases affecting reef-building corals following acute and chronic disturbances. One year after a severe tropical cyclone, corals inside reserves had sevenfold lower levels of disease than those in non-reserves. Similarly, disease prevalence was threefold lower on reserve reefs following chronic exposure to terrestrial run-off from a degraded river catchment, when exposure duration was below the long-term site average. Examination of 35 predictor variables indicated that lower levels of derelict fishing line and injured corals inside reserves were correlated with lower levels of coral disease in both case studies, signifying that successful disease mitigation occurs when activities that damage reefs are restricted. Conversely, reserves were ineffective in moderating disease when sites were exposed to higher than average levels of run-off, demonstrating that reductions in water quality undermine resilience afforded by reserve protection. In addition to implementing protected areas, we highlight that disease management efforts should also target improving water quality and limiting anthropogenic activities that cause injury.

Determining trigger values of suspended sediment for behavioral changes in a coral reef fish

Sediment from land use increases water turbidity and threatens the health of inshore coral reefs. This study performed experiments with a damselfish, Pomacentrus moluccensis, in four sediment treatments, control (0 mg l⁻¹), 10 mg l⁻¹ (∼1.7 NTU), 20 mg l⁻¹ (∼3.3 NTU) and 30 mg l⁻¹ (∼5 NTU), to determine when sediment triggers a change in habitat use and movement. We reviewed the literature to assess how frequently P. moluccensis would experience sub-optimal sediment conditions on the reef. Preference for live coral declined from 49.4% to 23.3% and movement between habitats declined from 2.1 to 0.4 times between 20 mg l⁻¹ and 30 mg l⁻¹, suggesting a sediment threshold for behavioral changes. Inshore areas of the Great Barrier Reef, P. moluccensis may encounter sub-optimal conditions between 8% and 53% of the time. Changes in these vital processes may have long-term effects on the persistence of populations, particularly as habitat loss on coral reefs increases.

Effects of sedimentation, eutrophication, and chemical pollution on coral reef fishes

Increasing exposure to sediment, nutrients, and chemical pollutants are threatening an estimated 25% of the worlds coral reefs. This chapter reviews the direct and indirect effects of these three forms of marine pollution on the behavior, physiology, life histories, and communities of coral reef fishes, and the potential consequences of altered fish abundances for the ecology of coral reefs. Increased sediment, both in suspension and settled, can directly affect reef fishes by reducing visual and chemical cues, disrupting the feeding of planktivores and herbivores, and altering predator–prey interactions. Sublethal effects on physiological performance, including gill damage, impaired osmoregulation, and larval development may also have long-term ecological consequences for coral reef fish communities. Increased sediment and nutrient loads can also lead to algal blooms and the proliferation of macroalgae, exposing coral reef fishes to hypoxia, toxins, and degrading habitat quality. Pesticides, heavy metals, and other chemical contaminants can accumulate in coral reef fishes, with as yet unknown ecological consequences. Finally, pharmaceuticals and personal care products can act as endocrine disrupters and alter behavior, and can be vectors for antibiotic-resistant bacteria. The documented effects of pollution on reef fishes suggest the potential for feedback loops, with altered fish behavior and abundances detrimentally affecting reef health. Given the rapid spread of coastal pollution, field studies on their multifaceted effects on ecological processes in coral reefs deserve a high priority. Coral reefs are increasingly subject to the effects of sedimentation, eutrophication, and chemical pollution [717, 783, 2493]. Currently, 275 million people worldwide reside within 30 km of coral reefs [380]. Some of the greatest increases in population density and coastal development are occurring in emerging tropical economies, including those in the Coral Triangle – the global biodiversity hotspot for coral reef ecosystems [1138]. The main types of pollutants delivered into coral reefs are sediments, nutrients, pesticides (herbicides and insecticides), heavy metals, and industrial and pharmaceutical contaminants [346,380].

Ecological consequences of land clearing and policy reform in Queensland

Land clearing threatens biodiversity, impairs the functioning of terrestrial, freshwater, and marine ecosystems, and is a key contributor to human-induced climate change. The rates of land clearing in the State of Queensland, Australia, are at globally significant levels, and have been the subject of intense and polarised political debate. In 2016, a legislative bill that aimed to restore stronger controls over land clearing failed to pass in the Queensland Parliament, despite the clear scientific basis for policy reform. Here, we provide a short history of the recent policy debate over land clearing in Queensland, in the context of its global and national ecological significance. Land clearing affects regional climates, leading to hotter, drier climates that will impact on the Queensland economy and local communities. Loss of habitat from land clearing is a key threatening process for many endangered animals and plants. Runoff from land clearing results in sediment and nutrient enrichment, which threatens the health of the Great Barrier Reef. Australia has made national and international commitments to conserve biodiversity and reduce our greenhouse gas emissions, but current land clearing policies are not consistent with these commitments. Stronger regulation is needed to reduce vegetation loss, such as target-based regulation, which sets a cap on land clearing and could effectively halt vegetation loss over the long term. Lasting policy reform is required, and we recommend an effective policy mix that restricts clearing, provides economic opportunities for vegetation retention, and informs the Australian community about the value of native vegetation.