Amit K. Samanta

Blue Shifting C-H ··· O Hydrogen Bonded Complexes between Chloroform and Small Cyclic Ketones: Ring-Size Effects on Stability and Spectral Shifts

Blue-shifting C-H...O hydrogen bonded complexes between chloroform and three small cyclic ketones (cyclohexanone, cyclopentanone, and cyclobutanone) have been identified by use of FTIR spectroscopy in CCl(4) solution at room temperature. The shifts of the C-H stretching fundamental of chloroform (nu(C-H)) in the said three complexes are +1, +2, and +5 cm(-1), respectively, and the complexation results in enhancement of the nu(C-H) transition intensity in all three cases. The 1:1 stoichiometry of the complexes is suggested by identifying distinct isosbestic points between the carbonyl stretching (nu(C=O)) fundamentals of the monomers and corresponding complexes for spectra measured with different chloroform to ketone concentrations. The nu(C=O) bands in the three complexes are red-shifted by 8, 19, and 6 cm(-1), and apparently have no correlation with the respective blue shifts of the nu(C-H) bands. Spectral analysis reveals that the complex with cyclohexanone is most stable, and the stability decreases with the ring size of the cyclic ketones. A qualitative explanation of the relative stabilities of the complexes is presented by correlating the hydrogen bond acceptor abilities of the carbonyl groups with the ring size of the cyclic ketones. Quantum mechanical calculations at the DFT/B3LYP/6-311++G(d,p) and MP2/6-31+G(d) levels were performed for predictions of the shapes of the complexes, electronic structure parameters of C-H (donor) and C=O (acceptor) groups, intermolecular interaction energies, spectral shifts, and evolution of those properties when the hydrogen bond distance between the donor-acceptor moieties is scanned. The results show that the binding energies of the complexes are correlated with the dipole moments, proton affinity, and n(O) --> sigma*(C-H) hyperconjugative charge transfer abilities of the three ketones. NBO analysis reveals that the blue shifting of the nu(C-H) transition in a complex is the net effect of hyperconjugation and repolarization/rehybridization of the bond under the influence of the electric field of carbonyl oxygen.

Experimental and theoretical investigations of the dissociation energy (D0) and dynamics of the water trimer, (H2O)3.

We report a joint experimental-theoretical study of the predissociation dynamics of the water trimer following excitation of the hydrogen bonded OH-stretch fundamental. The bond dissociation energy (D0) for the (H2O)3 → H2O + (H2O)2 dissociation channel is determined from fitting the speed distributions of selected rovibrational states of the water monomer fragment using velocity map imaging. The experimental value, D0 = 2650 ± 150 cm(-1), is in good agreement with the previously determined theoretical value, 2726 ± 30 cm(-1), obtained using an ab initio full-dimensional potential energy surface (PES) together with Diffusion Monte Carlo calculations [ Wang ; Bowman . J. Chem. Phys. 2011 , 135 , 131101 ]. Comparing this value to D0 of the dimer places the contribution of nonpairwise additivity to the hydrogen bonding at 450-500 cm(-1). Quasiclassical trajectory (QCT) calculations using this PES help elucidate the reaction mechanism. The trajectories show that most often one hydrogen bond breaks first, followed by breaking and re-forming of hydrogen bonds (often with different hydrogen bonds breaking) until, after many picoseconds, a water monomer is finally released. The translational energy distributions calculated by QCT for selected rotational levels of the monomer fragment agree with the experimental observations. The product translational and rotational energy distributions calculated by QCT also agree with statistical predictions. The availability of low-lying intermolecular vibrational levels in the dimer fragment is likely to facilitate energy transfer before dissociation occurs, leading to statistical-like product state distributions.

Experimental and theoretical investigations of energy transfer and hydrogen-bond breaking in small water and HCl clusters

Water is one of the most pervasive molecules on earth and other planetary bodies; it is the molecule that is searched for as the presumptive precursor to extraterrestrial life. It is also the paradigm substance illustrating ubiquitous hydrogen bonding (H-bonding) in the gas phase, liquids, crystals, and amorphous solids. Moreover, H-bonding with other molecules and between different molecules is of the utmost importance in chemistry and biology. It is no wonder, then, that for nearly a century theoreticians and experimentalists have tried to understand all aspects of H-bonding and its influence on reactivity. It is somewhat surprising, therefore, that several fundamental aspects of H-bonding that are particularly important for benchmarking theoretical models have remained unexplored experimentally. For example, even the binding strength between two gas-phase water molecules has never been determined with sufficient accuracy for comparison with high-level electronic structure calculations. Likewise, the effect of cooperativity (nonadditivity) in small H-bonded networks is not known with sufficient accuracy. An even greater challenge for both theory and experiment is the description of the dissociation dynamics of H-bonded small clusters upon acquiring vibrational excitation. This is because of the long lifetimes of many clusters, which requires running classical trajectories for many nanoseconds to achieve dissociation. In this Account, we describe recent progress and ongoing research that demonstrates how the combined and complementary efforts of theory and experiment are enlisted to determine bond dissociation energies (D0) of small dimers and cyclic trimers of water and HCl with unprecedented accuracy, describe dissociation dynamics, and assess the effects of cooperativity. The experimental techniques rely on IR excitation of H-bonded X-H stretch vibrations, measuring velocity distributions of fragments in specific rovibrational states, and determining product state distributions at the pair-correlation level. The theoretical methods are based on high-level ab initio potential energy surfaces used in quantum and classical dynamical calculations. We achieve excellent agreement on D0 between theory and experiments for all of the clusters that we have compared, as well as for cooperativity in ring trimers of water and HCl. We also show that both the long-range and the repulsive parts of the potential must be involved in bond breaking. We explain why H-bonds are so resilient and hard to break, and we propose that a common motif in the breaking of cyclic trimers is the opening of the ring following transfer of one quantum of stretch excitation to form open-chain structures that are weakly bound. However, it still takes many vibrational periods to release one monomer fragment from the open-chain structures. Our success with water and HCl dimers and trimers led us to embark on a more ambitious project: studies of mixed water and HCl small clusters. These clusters eventually lead to ionization of HCl and serve as prototypes of acid dissociation in water. Measurements and calculations of such ionizations are yet to be achieved, and we are now characterizing these systems by adding monomers one at a time. We describe our completed work on the HCl-H2O dimer and mention our recent theoretical results on larger mixed clusters.

Cooperative strengthening of an intramolecular O—H···O hydrogen bond by a weak C—H···O counterpart: matrix-isolation infrared spectroscopy and quantum chemical studies on 3-methyl-1,2-cyclohexanedione

Matrix-isolation infrared spectra of 1,2-cyclohexanedione (CD) and 3-methyl-1,2-cyclohexanedione (3-MeCD) were measured in a nitrogen matrix at 8 K. The spectral features reveal that, in the matrix environment, both molecules exist exclusively in the monohydroxy tautomeric form, which is stabilized by an intramolecular O-H...O=C hydrogen bond (HB). The nu(O-H) band of the enol tautomer of 3-MeCD appears at a relatively lower frequency and displays a somewhat broader bandwidth compared to that of CD, and these spectral differences between the two molecules are interpreted as being due to the formation of an interconnected C-H...O HB, where the enolic oxygen is the HB acceptor and one of the C-H covalent bonds of the methyl group is the HB donor. Electronic structure calculations at the B3LYP/6-311++G**, MP2/6-311++G**, and MP2/cc-pVTZ levels predict that this tautomer (enol-2) is approximately 3.5 kcal/mol more stable than a second enolic form (enol-1) where such interconnected H-bonding is absent. Theoretical analysis with a series of molecules having similar functional groups reveals that part of the excess stability (approximately 1 kcal/mol) of enol-2 originates from a cooperative interaction between the interconnected C-H...O and O-H...O HBs. In the IR spectrum, a weak band at 3007 cm(-1) is assigned to nu(C-H) of the methyl C-H bond involved in the H-bonded network. The spectra predicted by both harmonic and anharmonic calculations reveal that this transition is largely blue-shifted compared to the fundamentals of the other two methyl C-H stretching frequencies that are not involved in H-bonding. The conclusions are corroborated further by natural bond orbital (NBO) analysis.

CH···O interaction lowers hydrogen transfer barrier to keto–enol tautomerization of β-cyclohexanedione: combined infrared spectroscopic and electronic structure calculation study

Molecular association and keto-enol tautomerization of β-cyclohexanedione (β-CHD) have been investigated in argon matrix and also in a thin solid film prepared by depositing pure β-CHD vapor on a cold (8 K) KBr window. Infrared spectra reveal that, in low-pressure vapor and argon matrix, the molecules are exclusively in diketo tautomeric form. The CH···O hydrogen bonded dimers of the diketo tautomer are produced by annealing the matrix at 28 K. No indication is found for keto-enol tautomerization of β-CHD in dimeric complexes in argon matrix within the temperature range of 8-28 K. On the other hand, in thin film of pure diketo tautomer, the conversion initiates only when the film is heated at temperatures above 165 K. The observed threshold appears to be associated with excitation of the intermolecular modes, and the IR spectra recorded at high temperatures display narrowing of vibrational bandwidths, which has been associated with reorientations of the molecules in the film. The nonoccurrence of tautomerization of the matrix isolated dimer is consistent with the barrier predicted by electronic structure calculations at B3LYP/6-311++G** and MP2/6-311++G** levels of theory. The transition state calculation predicts that CH···O interaction has a dramatic effect on lowering of the tautomerization barrier, from more than 60 kcal/mol for the bare molecule to ~35-45 kcal/mol for dimers.

Energetics and Predissociation Dynamics of Small Water, HCl, and Mixed HCl–Water Clusters

This Review summarizes recent research on vibrational predissociation (VP) of hydrogen-bonded clusters. Specifically, the focus is on breaking of hydrogen bonds following excitation of an intramolecular vibration of the cluster. VP of the water dimer and trimer, HCl clusters, and mixed HCl-water clusters are the major topics, but related work on hydrogen halide dimers and trimers, ammonia clusters, and mixed dimers with polyatomic units are reviewed for completion and comparison. The theoretical focus is on generating accurate potential energy surfaces (PESs) that can be used in detailed dynamical calculations, mainly using the quasiclassical trajectory approach. These PESs have to extend from the region describing large amplitude motion around the minimum to regions where fragments are formed. The experimental methodology exploits velocity map imaging to generate pair-correlated product translational energy distributions from which accurate bond dissociation energies of dimers and trimers and energy disposal in fragments are obtained. The excellent agreement between theory and experiment on bond dissociation energies, energy disposal in fragments, and the contributions of cooperativity demonstrates that it is now possible, with state-of-the-art experimental and theoretical methods, to make accurate predictions about dynamical and energetic properties of dissociating clusters.

Experiment and Theory Elucidate the Multichannel Predissociation Dynamics of the HCl Trimer: Breaking Up Is Hard To Do

The breaking of hydrogen bonds in molecular systems has profound effects on liquids, e.g., water, biomolecules, e.g., DNA, etc., and so it is no exaggeration to assert the importance of these bonds to living systems. However, despite years of extensive research on hydrogen bonds, many of the details of how these bonds break and the corresponding energy redistribution processes remain poorly understood. Here we report extensive experimental and theoretical insights into the breakup of two or three hydrogen bonds in the dissociation of a paradigm system of a hydrogen-bonded network, the ring HCl trimer. Experimental state-to-state vibrational predissociation dynamics of the trimer following vibrational excitation were studied by using velocity map imaging and resonance-enhanced multiphoton ionization, providing dissociation energies and product state distributions for the trimers breakup into three separate monomers or into dimer + monomer. Accompanying the experiments are high-level calculations using diffusion Monte Carlo and quasiclassical simulations, whose results validate the experimental ones and further elucidate energy distributions in the products. The calculations make use of a new, highly accurate potential energy surface. Simulations indicate that the dissociation mechanism requires the excitation to first relax into low-frequency motions of the trimer, resulting in the breaking of a single hydrogen bond. This allows the system to explore a critical van der Waals minimum region from which dissociation occurs readily to monomer + dimer.

Hydrogen-bond vibrations in the S1↔S0 spectra of a nucleobase pair analog: A mixed dimer between 2-pyridone and formamide

The vibronically resolved electronic spectra for S(1)<-->S(0) transitions of a mixed dimer between 2-pyridone (2PY) and formamide have been measured in a supersonic free jet expansion using laser-induced fluorescence spectroscopy. Quantum chemistry method at different levels of theory has been used to optimize the geometries of the dimer for the S(0) and S(1) electronic states and also to calculate the normal vibrational modes. Assignments for the vibronic bands observed in the dispersed fluorescence spectrum of the 0(0) (0) band have been suggested with the aid of the ground state frequencies calculated by density functional theoretical method. Spectral analysis reveals that electronic excitation causes extensive mixing of the low-frequency intermolecular vibrational modes of the dimer with some of the intramolecular modes of the 2PY moiety. This spectral behavior is consistent with the complete active space self-consistent field theoretical prediction that with respect to a number of geometrical parameters the dimer geometry in S(1) is significantly distorted from the geometry of the S(0) state.

Descriptor-Based Approach for the Prediction of Cation Vacancy Formation Energies and Transition Levels

Point defects largely determine the observed optical and electrical properties of a given material, yet the characterization and identification of defects has remained a slow and tedious process, both experimentally and theoretically. We demonstrate a computationally-cheap model that can reliably predict the formation energies of cation vacancies as well as the location of their electronic states in a large set of II-VI and III-V materials using only parameters obtained from the bulk primitive unit cell (2-4 atoms). We apply our model to ordered alloys within the CdZnSeTe, CdZnS, and ZnMgO systems and predict the positions of cation vacancy charge-state transition levels with a mean absolute error of < 0.2 eV compared to the explicitly calculated values, showing useful accuracy without the need for the expensive and large-scale calculations typically required. This suggests the properties of other point defects may also be predicted with useful accuracy from only bulk-derived properties.

Antagonistic Interplay Between an Intermolecular CH⋅⋅⋅O and an Intramolecular OH⋅⋅⋅O Hydrogen Bond in a 1:1 Complex Between 1,2-Cyclohexanedione and Chloroform: A Combined Matrix Isolation Infrared and Quantum Chemistry Study

Matrix isolation infrared spectra of a weak C-H···O hydrogen-bonded complex between the keto-enol form of 1,2-cyclohexanedione (HCHD) and chloroform have been measured. The spectra reveal that the intramolecular O-H···O H-bond of HCHD is weakened as a result of complex formation, manifesting in prominent blue shift (∼23 cm-1) of the νO-H band and red shifts (∼7 cm-1) of νC═O bands of the acceptor (HCHD). The νC-H band of donor CHCl3 undergoes a large red shift of ∼33 cm-1. Very similar spectral effects are also observed for formation of the complex in CCl4 solution at room temperature. Our analysis reveals that out of several possible iso-energetic conformational forms of the complex, the one involving antagonistic interplay between the two hydrogen bonds (intermolecular C-H···O and intramolecular O-H···O) is preferred. The combined experimental and calculated data presented here suggest that in condensed media, conformational preferences are guided by directional hyperconjugative charge transfer interactions at the C-H···O hydrogen bonding site of the complex.