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Featured researches published by Amy E. Bauer.


Preventive Veterinary Medicine | 2016

A cross sectional study evaluating the prevalence of Coxiella burnetii, potential risk factors for infection, and agreement between diagnostic methods in goats in Indiana

Amy E. Bauer; Kirk R.A. Hubbard; April J. Johnson; Joanne B. Messick; Hsin-Yi Weng; Roman M. Pogranichniy

Coxiella burnetii is the etiologic agent of the zoonotic disease Q fever and is considered to be endemic in domestic ruminants. Small ruminants in particular are important reservoirs for human infection. Serologic and molecular methods are both available for diagnosis of infection with C. burnetii, but there has been little research evaluating the prevalence of this organism in small ruminants outside of the context of clinical disease outbreaks. The objectives of this study were to estimate seroprevalence of C. burnetii and the prevalence of shedding of C. burnetii DNA in milk by goats in Indiana, USA, to evaluate potential risk factors for association with C. burnetii exposure and shedding, and to assess the level of agreement between the enzyme-linked immunosorbent assay (ELISA) and real-time polymerase chain reaction (PCR) tests used to estimate prevalence. A total of 649 does over 1 year of age and not pregnant at the time of sampling were included in the study. Serum samples were collected from 608 does representing 89 farms. Milk samples were collected from 387 does representing 85 farms. Both milk and serum samples were collected from 356 does representing 80 farms. The estimated individual seroprevalence and shedding prevalence in milk adjusted for clustering were 3.1% (n=23/608, 95% CI: 1.2-7.0%) and 2.5% (n=9/387, 9.5% CI: 1.0-5.6%) respectively. Estimated adjusted herd level C. burnetii seroprevalence and herd level shedding prevalence were 11.5% (n=10/89, 95% CI: 6.4-20.1%) and 7.0% (n=6/85, 95% CI: 3.3-14.6%) respectively. Based on a generalized estimating equation model (GEE), meat breeds of goat had 7.0 times increased odds of shedding C. burnetii DNA in milk samples as compared to dairy breeds. Agreement between tests as determined by Cohens kappa was poor at both the individual (kappa=0.04, 95% CI: -0.1 to 0.2) and herd (kappa=0.2, 95% CI: -0.1 to 0.5) levels. This indicates that serologic screening alone is unlikely to prevent the introduction of does shedding C. burnetii into herds.


PLOS ONE | 2018

A cross-sectional study to estimate prevalence of periodontal disease in a population of dogs (Canis familiaris) in commercial breeding facilities in Indiana and Illinois

Judith L. Stella; Amy E. Bauer; Candace C. Croney

The objectives of this cross-sectional study were: 1) to estimate the prevalence and characterize the severity of periodontal disease in a population of dogs housed in commercial breeding facilities; 2) to characterize PD preventive care utilized by facility owners; and 3) to assess inter-rater reliability of a visual scoring assessment tool. Adult dogs (N = 445) representing 42 breeds at 24 CB facilities in Indiana and Illinois were assessed. Periodontal disease was scored visually using the American Veterinary Dental Collage 0-IV scale. Inter-rater reliability was assessed on 198 dogs and facility owners were asked to provide information about the preventive care utilized. The overall prevalence of periodontal disease (Grades I-IV) was 86.3% (95% CI: 82.9, 89.3). An ordered logistic regression analysis found age (OR = 1.4; 95% CI 1.24, 1.54; P<0.0001), facility (OR = 1.13; 95% CI 1.09, 1.18; P<0.0001), sex (OR = 1.7; 95% CI 1.12, 2.65; P = 0.013), and non-professional dental scaling (OR = 2.82; 95% CI 1.34, 5.91; P = 0.006) to be statistically significant. Inter-rater reliability analysis found agreement to be 86.2%, with a weighted kappa of 0.4731 (95% CI 0.3847, 0.5615) indicating moderate agreement. Risk of periodontal disease increased with increasing age. Additionally, a trend toward decreasing risk with increasing weight was also found, although it was not statistically significant. The trends identified agree with studies that have evaluated periodontal disease in the companion dog population and do not support the assumption that the dental health of dogs in commercial breeding facilities is worse than that of the population as a whole. Although there were few cases of severe periodontal disease and all facilities employed some type of preventive care in this sample, the large number of dogs with some degree of disease (Grades I-IV) suggests that further investigation of preventive care is warranted.


PLOS ONE | 2018

Evaluating the validity and reliability of a visual dental scale for detection of periodontal disease (PD) in non-anesthetized dogs (Canis familiaris)

Amy E. Bauer; Judith L. Stella; Matthew Lemmons; Candace C. Croney

Periodontal disease is one of the most common conditions affecting companion dogs. The objectives of this cross-sectional study were: to determine 1) the agreement between visual assessments (VA) of periodontal disease (PD) performed on awake dogs and the reference standard (RS) of a dental examination and radiographs performed with the dog under general anesthesia, and 2) inter-rater reliability (IRR) for two individuals performing VAs of PD on the same dogs. One hundred and eight dogs were recruited from three veterinary practices. An oral examination and visual PD staging based on the American Veterinary Dental College’s (AVDC) 5-point scale was performed by the investigators prior to general anesthesia and the dental procedure. After the anesthetic evaluation and radiographs, the attending veterinarian staged each dog based on the AVDC’s 5-point scale. Agreement between the VA and RS as well as IRR were determined using percent agreement and a weighted kappa statistic. Eighty-nine dogs received a complete oral examination under general anesthesia with periodontal probing and full-mouth radiographs. Fifty-nine dogs received a VA by both raters. VA agreed with the RS 41.57% of the time with a weighted kappa of 0.42 (95% confidence interval 0.29–0.55), indicating moderate agreement. Between raters, VA agreed 61.02% of the time with a weighted kappa of 0.63 (95% confidence interval 0.49–0.76), indicating substantial IRR. The results of this study reinforce the idea that an oral examination in an awake dog can be a helpful screening tool, but should not be considered a comprehensive evaluation of periodontal health. In facilities housing large numbers of dogs such as shelters, breeding kennels, and research facilities, use of a VA can aid in identifying and prioritizing dogs most in need of procedures such as professional cleaning, periodontal treatment, including closed root planing, or surgical care.


Animal | 2018

Does Flooring Substrate Impact Kennel and Dog Cleanliness in Commercial Breeding Facilities

Judith L. Stella; Moriah Hurt; Amy E. Bauer; Paulo Gomes; Audrey Ruple; Alan Beck; Candace C. Croney

Simple Summary It is important to understand how the flooring substrate used in dog housing impacts dog health and well-being. Aspects to consider include paw, elbow, and hock health, the cleanliness of the dog, and the ability of the floors to be cleaned easily and thoroughly. This pilot study assessed the health and cleanliness of 118 dogs housed on three different types of flooring commonly found in commercial breeding kennels. No serious paw, elbow, or hock problems were identified. Thirty-one percent or fewer kennels at each facility were found to have fecal contamination after routine cleaning and the majority of dogs were clean. These findings indicate that a well-managed kennel can maintain clean, healthy dogs on different types of flooring substrates. Abstract Evaluation of kennel flooring surfaces is needed to understand their impacts on dog health and well-being. This pilot study aimed to characterize aspects of physical health, kennel cleanliness, and dog body cleanliness on flooring types common in US breeding kennels. Subjects were 118 adult dogs housed on diamond-coated expanded metal (DCEM), polypropylene (POLY), or concrete (CON) flooring at five commercial breeding facilities in Indiana, U.S. Body condition, paw, elbow, and hock health scores were recorded. Each indoor kennel and dog was visually assessed for cleanliness. Kennels were swabbed immediately after cleaning with electrostatic dry cloths and cultured for Escherichia coli. Descriptive statistics were used for analysis. Mean body condition score (BCS), kennel and dog cleanliness scores were all near ideal (3, 1.15, and 1.04, respectively). Thirty-one percent or fewer kennels at each facility were culture-positive for E. coli after cleaning. No serious paw, elbow, or hock problems were identified. Overall, the findings indicate that with appropriate management and regular access to additional surfaces, dog foot health, cleanliness, and kennel cleanliness can be maintained on the flooring types investigated.


Archive | 2017

Reproductive and Milk Production Profiles in Serrana Goats

João Simões; Amy E. Bauer

Serrana goats are the major Portuguese local breed, reared under a pastoralist system, mainly in mountain regions. Approximately 20,000 adult animals are registered in the respective pedigree book, in small farms normally with fewer than 100 goats. The overall production rate is 1.47 with cabrito, weighing 8–9 kg at 45 days old, for trade. The 150-days normalized milk production is low, less than 100 L in the Transmontano ecotype (11,000 goats), and mainly used in cheese manufacture. The empirical reproductive management and incipient genetic selection program were predominant for the Transmontano, Ribatejano, Jarmelista, and Serra ecotypes over the last three decades. In consequence, the selection of this breed can be considered environment-friendly. According to pedigree record data from 1987, the circannual profile of normal parturitions presents peaks, the first one in January, from goats bred in August, and the second in October for goats bred in May. The 150-days normalized milk production also demonstrates seasonal variations according to the month of goat parturitions for all four ecotypes. We conclude that an overall improvement of genetic, reproductive, and nutritional aspects should be addressed in regard to keeping the Serrana goat breed in pastoralist systems, independently of each ecotype.


American Journal of Veterinary Research | 2016

Detection of hemoplasma infection of goats by use of a quantitative polymerase chain reaction assay and risk factor analysis for infection

Kathy A. Johnson; Naíla C. do Nascimento; Amy E. Bauer; Hsin-Yi Weng; G. Kenitra Hammac; Joanne B. Messick

OBJECTIVE To develop and validate a real-time quantitative PCR (qPCR) assay for the detection and quantification of Mycoplasma ovis in goats and investigate the prevalence and risk factors for hemoplasma infection of goats located in Indiana. ANIMALS 362 adult female goats on 61 farms. PROCEDURES Primers were designed for amplification of a fragment of the dnaK gene of M ovis by use of a qPCR assay. Blood samples were collected into EDTA-containing tubes for use in total DNA extraction, blood film evaluation, and determination of PCV. Limit of detection, intra-assay variability, interassay variability, and specificity of the assay were determined. RESULTS Reaction efficiency of the qPCR assay was 94.45% (R(2), 0.99; slope, -3.4623), and the assay consistently detected as few as 10 copies of plasmid/reaction. Prevalence of infection in goats on the basis of results for the qPCR assay was 18.0% (95% confidence interval, 14% to 22%), with infected goats ranging from 1 to 14 years old, whereby 61% (95% confidence interval, 47% to 73%) of the farms had at least 1 infected goat. Bacterial load in goats infected with M ovis ranged from 1.05 × 10(3) target copies/mL of blood to 1.85 × 10(5) target copies/mL of blood; however, no bacteria were observed on blood films. Production use of a goat was the only risk factor significantly associated with hemoplasma infection. CONCLUSIONS AND CLINICAL RELEVANCE The qPCR assay was more sensitive for detecting hemoplasma infection than was evaluation of a blood film, and production use of a goat was a risk factor for infection.


BMC Veterinary Research | 2015

Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana.

Amy E. Bauer; Sonora Olivas; Maria Cooper; Heidie Hornstra; Paul Keim; Talima Pearson; April J. Johnson


Pet Behaviour Science | 2017

Evaluating FIDO: Developing and pilot testing the Field Instantaneous Dog Observation tool

Amy E. Bauer; Mary Jordan; Monica Colon; Traci Shreyer; Candace C. Croney


Research in Veterinary Science | 2017

An evaluation of risk factors for infection with Coxiella burnetii in domestic goats

Amy E. Bauer; April J. Johnson; Hsin-Yi Weng; Roman M. Pogranichniy; George E. Moore


Archive | 2017

Adding pieces to the puzzle: Assessing the geographic distribution of coxiella burnetii in dairy cattle and goats from the state of indiana (USA)

Amy E. Bauer; Sonora Olivas; Heidie Hornstra; Talima Pearson

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