Amy L. Fuller

Automated Chemical Crystallography

The first fully automated small-molecule robotic X-ray diffractometer is described. After demonstrating the utility of the instrument using multiple samples of ammonium bitartrate, we investigated the conformational chirality of diphenyl dichalcogenide (E(2)Ph(2), where E = S, Se, or Te). Structural and computational studies suggest that the two enantiomers are energetically indistinguishable. Therefore, it was unsurprising that we found (in 35 suitable data collections) the proportion 0.51:0.49 of M-S(2)Ph(2) to P-S(2)Ph(2) in the bulk sample. Interestingly, after 65 data collections of Te(2)Ph(2), (46 provided suitable data sets), we found the proportion 0.72 +/- 0.13 of M-Te(2)Ph(2), suggesting there could be a statistically significant preference for the M-enantiomer in the sample examined here. We found that Se(2)Ph(2) underwent homochiral crystallization, with all 24 crystals being M. Our experiments may represent a salutary lesson in statistical analysis.

Intramolecular phosphine-phosphine donor-acceptor complexes.

The reaction of 5-diphenoxyphosphanyl-6-diisopropylphosphinoacenaphthene 12 with chlorotrimethylsilane unexpectedly gave a phosphonium-phosphine compound 13, containing the structural motif of four phosphorus atoms connected in a chain. To explain the mechanism of this complex transformation, a proposed intermediate 5-dichlorophosphino-6-diisopropylphosphinoacenaphthene 14 was synthesized by an alternative method. The two (formally) phosphine environments in 14 form an intramolecular donor-acceptor (phosphonium-phosphoranide) complex, stable at room temperature in the solid state and as a solution in certain solvents. A (31)P NMR mechanistic study showed that, despite the presence of a rigid acenaphthene backbone, 14 is unstable in the presence of nucleophiles and disproportionates into 13 and other phosphorus containing products. Both 13 and 14 have been crystallographically characterized.

Controlling Cu⋯Cu distances using halides: (8-phenylthionaphth-1-yl)diphenylphosphine copper halide dimers

In the isomorphous binuclear Cu2X2L2 systems (L = (8-phenylthionaphth-1-yl)diphenylphosphine the Cu...Cu separation is reduced as the halide size increases.

Synthetic and Structural Studies of 1‐Halo‐8‐(alkylchalcogeno)naphthalene Derivatives

A series of eight 1-halo-8-(alkylchalcogeno)naphthalene derivatives (1-8; halogen=Br, I; alkylchalcogen=SEt, SPh, SePh, TePh) containing a halogen and a chalcogen atom occupying the peri positions have been prepared and fully characterised by using X-ray crystallography, multinuclear NMR spectroscopy, IR spectroscopy and MS. Naphthalene distortion due to non-covalent substituent interactions was studied as a function of the bulk of the interacting chalcogen atoms and the size and nature of the alkyl group attached to them. X-ray data for 1, 2, 4 and 5-8 were compared. Molecular structures were analysed in terms of naphthalene ring torsions, peri-atom displacement, splay angle magnitude, X...E interactions, aromatic ring orientations and quasi-linear X...E-C arrangements. A general increase in the X...E distance was observed for molecules that contain bulkier atoms at the peri positions. The I...S distance of 4 is comparable with the I...Te distance of 8, and is ascribed to a stronger lone pair-lone pair repulsion due to the presence of an axial S(naphthyl) ring conformation. Density functional theory (B3LYP) calculations performed on 5-8 revealed Wiberg bond index values of 0.05-0.08, which indicate minor interactions taking place between the non-bonded atoms in these compounds.

O2-dependent aliphatic carbon-carbon bond cleavage reactivity in a Ni(II) enolate complex having a hydrogen bond donor microenvironment; comparison with a hydrophobic analogue.

A mononuclear Ni(II) complex having an acireductone type ligand, and supported by the bnpapa (N,N-bis((6-neopentylamino-2-pyridyl)methyl)-N-((2-pyridyl)methyl)amine) ligand, [(bnpapa)Ni(PhC(O)C(OH)C(O)Ph)]ClO(4) (14), has been prepared and characterized by elemental analysis, (1)H NMR, FTIR, and UV-vis. To gain insight into the (1)H NMR features of 14, the air stable analogue complexes [(bnpapa)Ni(CH(3)C(O)CHC(O)CH(3))]ClO(4) (16) and [(bnpapa)Ni(ONHC(O)CH(3))]ClO(4) (17) were prepared and characterized by X-ray crystallography, (1)H NMR, FTIR, UV-vis, mass spectrometry, and solution conductivity measurements. Compounds 16 and 17 are 1:1 electrolyte species in CH(3)CN. (1)H and (2)H NMR studies of 14, 16, and 17 and deuterated analogues revealed that the complexes having six-membered chelate rings for the exogenous ligand (14 and 16) do not have a plane of symmetry within the solvated cation and thus exhibit more complicated (1)H NMR spectra. Compound 17, as well as other simple Ni(II) complexes of the bnpapa ligand (e.g., [(bnpapa)Ni(ClO(4))(CH(3)CN)]ClO(4) (18) and [(bnpapaNi)(2)(mu-Cl)(2)](ClO(4))(2) (19)), exhibit (1)H NMR spectra consistent with the presence of a plane of symmetry within the cation. Treatment of [(bnpapa)Ni(PhC(O)C(OH)C(O)Ph)]ClO(4) (14) with O(2) results in aliphatic carbon-carbon bond cleavage within the acireductone-type ligand and the formation of [(bnpapa)Ni(O(2)CPh)]ClO(4) (9), benzoic acid, benzil, and CO. Use of (18)O(2) in the reaction gives high levels of incorporation (>80%) of one labeled oxygen atom into 9 and benzoic acid. The product mixture and level of (18)O incorporation in this reaction is different than that exhibited by the analogue supported the hydrophobic 6-Ph(2)TPA ligand, [(6-Ph(2)TPA)Ni(PhC(O)C(OH)C(O)Ph)]ClO(4) (2). We propose that this difference is due to variations in the reactivity of bnpapa- and 6-Ph(2)TPA-ligated Ni(II) complexes with triketone and/or peroxide species produced in the reaction pathway.

1-Bromo-8-(phenylselenyl)naphthalene

We are investigating the structures of 1,8-disubstituted naphthalenes as part of a wider study into steric crowding and hyperconjugation. In the title compound, C16H11BrSe, the Se⋯Br distance is 3.1136 (5) A. The Br and Se atoms lie 0.400 (1) and −0.421 (1) A, respectively, from the mean plane of the naphthalene backbone. The heavy atoms are further accommodated by in-plane distortions in the C—C—C group between the Br and Se atoms. As expected from the heavy atom displacement, the phenylselenyl group lies on one side of the naphthalene plane, the phenyl ring being inclined at 88° to the naphthalene plane.

Manganese(II) chemistry of a new N3O-donor chelate ligand: synthesis, X-ray structures, and magnetic properties of solvent- and oxalate-bound complexes

The synthesis and characterization of a new N3O donor ligand N-benzyl-N-((6-pivaloylamido-2-pyridyl)methyl)-N-(2-pyridylmethyl)amine (bpppa) is reported. Treatment of bpppa with Mn(II)(ClO4)2.6H2O in acetonitrile solution yielded the mononuclear [(bpppa)Mn(CH3CN)(H2O)](ClO4)2 (1) which was characterized by X-ray crystallography, elemental analysis, IR spectroscopy, mass spectrometry, and a solution magnetic moment measurement. Admixture of equimolar equivalents of bpppa and Mn(II)(ClO4)2.6H2O in methanol solution, followed by addition of 0.5 or 1 equivalents of sodium oxalate, yielded the binuclear complex [{(bpppa)Mn}2([mu]-C2O4)](ClO4)2 (2), which was characterized by X-ray crystallography, elemental analysis, IR spectroscopy, mass spectrometry, and solid-state magnetic measurements. While 1 is mononuclear, the formation of the binuclear oxalate derivative indicates that use of the bpppa ligand does not enable isolation of a complex that is structurally relevant to a proposed 1:1 Mn(II)-oxalate adduct in the catalytic cycle of the oxalate degrading enzyme oxalate decarboxylase.

Influence of water on the formation of O2-reactive divalent metal enolate complexes of relevance to acireductone dioxygenases.

Reaction conditions were evaluated for the preparation of [(6-PhTPA)Ni(PhC(O)C(OH)C(O)Ph)]ClO(4) (3) and [(6-Ph(2)TPA)Co(PhC(O)C(OH)C(O)Ph)]ClO(4) (7), two complexes of structural relevance to the enzyme/substrate (ES) adduct in Ni(II)- and Co(II)-containing forms of acireductone dioxygenase. The presence of water in reactions directed at the preparation of 3 and 7 was found to result in isomerization of the enolate precursor 2-hydroxy-1,3-diphenylpropane-1,3-dione to give the ester 2-oxo-2-phenylethylbenzoate. Performing synthetic procedures under dryer conditions reduced the amount of ester production and enabled the isolation of 3 in high yield. This complex was comprehensively characterized, including by X-ray crystallography. Using similar conditions for the 6-Ph(2)TPACo-containing system, the amount of ester generated was only modestly affected, but the formation of a benzoate complex ([(6-Ph(2)TPA)Co(O(2)CPh)]ClO(4), 10) resulting from ester hydrolysis was prevented. The best preparation of 7 was found to involve dry conditions and short reaction times. The approach outlined herein toward determining appropriate reaction conditions for the preparation of 3 and 7 involved the preparation and characterization of several air-stable (6-PhTPA)Ni- and (6-Ph(2)TPA)Co-containing analog complexes having enolate, solvent, and benzoate ligands. These complexes were used as paramagnetic (1)H NMR standards for evaluation of reaction mixtures containing 3 and 7.

8-Bromo-naphthalen-1-amine.

The title compound, C10H8BrN, was obtained by slow addition of sodium azide to 8-bromo-1-naphthoic acid, followed by addition of aqueous ammonia. The crude product was crystallized from petroleum ether to give pink crystals. Compared to other 1,8-disubstituted naphthalene compounds, this compound exhibits less strain between the 1 and 8 substituents. Additionally, the NH protons form both intra- and intermolecular hydrogen bonds. The naphthalene units are arranged in a herring-bone stacking motif.

1,2-Bis(2-bromo­benz­yl)diselane

In the title compound, C14H12Br2Se2, the Se—Se bond length [2.3034 (9) Å] is similar to those in diphenyl diselenide [2.3066 (7) and 2.3073 (10) Å] and shorter than that in 1,8-diselenonaphthalene [2.0879 (8)Å]. The molecule adopts a classical gauche conformation.