Ana Fita

Breeding and Domesticating Crops Adapted to Drought and Salinity: A New Paradigm for Increasing Food Production

World population is expected to reach 9.2 × 109 people by 2050. Feeding them will require a boost in crop productivity using innovative approaches. Current agricultural production is very dependent on large amounts of inputs and water availability is a major limiting factor. In addition, the loss of genetic diversity and the threat of climate change make a change of paradigm in plant breeding and agricultural practices necessary. Average yields in all major crops are only a small fraction of record yields, and drought and soil salinity are the main factors responsible for yield reduction. Therefore there is the need to enhance crop productivity by improving crop adaptation. Here we review the present situation and propose the development of crops tolerant to drought and salt stress for addressing the challenge of dramatically increasing food production in the near future. The success in the development of crops adapted to drought and salt depends on the efficient and combined use of genetic engineering and traditional breeding tools. Moreover, we propose the domestication of new halophilic crops to create a ‘saline agriculture’ which will not compete in terms of resources with conventional agriculture.

Characterization of composition traits related to organoleptic and functional quality for the differentiation, selection and enhancement of local varieties of tomato from different cultivar groups.

Tomato (Solanum lycopersicum) local varieties are having an increasing demand. We characterized 69 local tomato accessions from eight cultivar groups for proximate composition traits, major sugars, acids and antioxidants. A large diversity was found, with differences among accessions of almost tenfold for lycopene. Significant differences were found among cultivar group means for most traits. The Cherry and Penjar groups generally presented higher dry matter, soluble solids content, titratable acidity, taste index, β-carotene, ascorbic acid, total phenolics, and antioxidant activity that the other groups. Wide ranges of variation were found within each cultivar group. Positive correlations were found between proximate traits related to taste and antioxidants. The multivariate principal components analysis confirms the distinct profile of the Cherry and Penjar groups and the large variation within groups. The results will be useful for the differentiation, enhancement and selection of local tomato varieties with improved organoleptic properties and functional quality.

Introgressiomics: a new approach for using crop wild relatives in breeding for adaptation to climate change

The need to boost agricultural production in the coming decades in a climate change scenario requires new approaches for the development of new crop varieties that are more resilient and more efficient in the use of resources. Crop wild relatives (CWRs) are a source of variation for many traits of interest in breeding, in particular tolerance to abiotic and biotic stresses. However, their potential in plant breeding has largely remained unexploited. CWRs can make an effective contribution to broadening the genetic base of crops and to introgressing traits of interest, but their direct use by breeders in breeding programs is usually not feasible due to the presence of undesirable traits in CWRs (linkage drag) and frequent breeding barriers with the crop. Here we call for a new approach, which we tentatively call ‘introgressiomics’, which consists of mass scale development of plant materials and populations with introgressions from CWRs into the genetic background of crops. Introgressiomics is a form of pre-emptive breeding and can be focused, when looking for specific phenotypes, or un-focused, when it is aimed at creating highly diverse introgressed populations. Exploring germplasm collections and identifying adequate species and accessions from different genepools encompassing a high diversity, using different strategies like the creation of germplasm diversity sets, Focused identification of germplasm strategy (FIGS) or gap analysis, is a first step in introgressiomics. Interspecific hybridization and backcrossing is often a major barrier for introgressiomics, but a number of techniques can be used to potentially overcome these and produce introgression populations. The generation of chromosome substitution lines (CSLs), introgression lines (ILs), or multi-parent advanced inter-cross (MAGIC) populations by means of marker-assisted selection allows not only the genetic analysis of traits present in CWRs, but also developing genetically characterized elite materials that can be easily incorporated in breeding programs. Genomic tools, in particular high-throughput molecular markers, facilitate the characterization and development of introgressiomics populations, while new plant breeding techniques (NPBTs) can enhance the introgression and use of genes from CWRs in the genetic background of crops. An efficient use of introgressiomics populations requires moving the materials into breeding pipelines. In this respect public–private partnerships (PPPs) can contribute to an increased use of introgressed materials by breeders. We hope that the introgressiomics approach will contribute to the development of a new generation of cultivars with dramatically improved yield and performance that may allow coping with the environmental changes caused by climate change while at the same time contributing to a more efficient and sustainable agriculture.

Diversity in expression of phosphorus (P) responsive genes in Cucumis melo L.

Background Phosphorus (P) is a major limiting nutrient for plant growth in many soils. Studies in model species have identified genes involved in plant adaptations to low soil P availability. However, little information is available on the genetic bases of these adaptations in vegetable crops. In this respect, sequence data for melon now makes it possible to identify melon orthologues of candidate P responsive genes, and the expression of these genes can be used to explain the diversity in the root system adaptation to low P availability, recently observed in this species. Methodology and Findings Transcriptional responses to P starvation were studied in nine diverse melon accessions by comparing the expression of eight candidate genes (Cm-PAP10.1, Cm-PAP10.2, Cm-RNS1, Cm-PPCK1, Cm-transferase, Cm-SQD1, Cm-DGD1 and Cm-SPX2) under P replete and P starved conditions. Differences among melon accessions were observed in response to P starvation, including differences in plant morphology, P uptake, P use efficiency (PUE) and gene expression. All studied genes were up regulated under P starvation conditions. Differences in the expression of genes involved in P mobilization and remobilization (Cm-PAP10.1, Cm-PAP10.2 and Cm-RNS1) under P starvation conditions explained part of the differences in P uptake and PUE among melon accessions. The levels of expression of the other studied genes were diverse among melon accessions, but contributed less to the phenotypical response of the accessions. Conclusions This is the first time that these genes have been described in the context of P starvation responses in melon. There exists significant diversity in gene expression levels and P use efficiency among melon accessions as well as significant correlations between gene expression levels and phenotypical measurements.

Performance of Cucumis melo ssp. agrestis as a rootstock for melon

Summary Grafting is a suitable method to control soil-borne diseases in melon (Cucumis melo L.) crops. To date, several Cucurbita species and their inter-specific hybrids have been tested as rootstocks. However, graft-scion incompatibility and lower fruit quality have prevented their commercial use. The wild accession ‘Pat 81’ ssp. agrestis of C. melo is highly resistant to Monosporascus cannonballus Pollack et Uecker root rot, and develops a root system that is more suitable to withstand infested soils than that of cultivated melon. The potential of ‘Pat 81’ as a rootstock for melons (e.g., ‘Piel de Sapo’ type, C. melo ssp. melo) compared with the popular rootstock ‘RS 841’ (Cucurbita maxima Cucurbita moschata) has been evaluated here. The response of grafted plants to Monosporascus root rot disease, and rootstock effects on plant performance and fruit quality have been investigated using both classical methods and modern technologies (e.g., root image analysis and real-time PCR). The results indicate that, during infection, the root system of ‘Pat 81’ adapts to the needs of the aerial part of the ‘Piel de Sapo’ scion, displays a high level of resistance to M. cannonballus (similar to ‘RS 841’), and provides the plant with more healthy roots, with a higher root/vine biomass ratio compared with non-grafted ‘Piel de Sapo’. In addition, ‘Pat 81’ rootstock retains its favourable root structure (i.e., larger total length and root area) to withstand soil stress. In healthy soils, ‘Pat 81’ rootstocks had less effect on fruit quality than ‘RS 841’, leading to a lower percentage of non-marketable products. The high resistance of ‘Pat 81’, and its reduced effect on fruit quality, point to it as a good rootstock for the grafting of melons to resist M. Cannonballus infested soils.

Root transcriptional responses of two melon genotypes with contrasting resistance to Monosporascus cannonballus (Pollack et Uecker) infection.

BackgroundMonosporascus cannonballus is the main causal agent of melon vine decline disease. Several studies have been carried out mainly focused on the study of the penetration of this pathogen into melon roots, the evaluation of symptoms severity on infected roots, and screening assays for breeding programs. However, a detailed molecular view on the early interaction between M. cannonballus and melon roots in either susceptible or resistant genotypes is lacking. In the present study, we used a melon oligo-based microarray to investigate the gene expression responses of two melon genotypes, Cucumis melo ‘Piel de sapo’ (‘PS’) and C. melo ‘Pat 81’, with contrasting resistance to the disease. This study was carried out at 1 and 3 days after infection (DPI) by M. cannonballus.ResultsOur results indicate a dissimilar behavior of the susceptible vs. the resistant genotypes from 1 to 3 DPI. ‘PS’ responded with a more rapid infection response than ‘Pat 81’ at 1 DPI. At 3 DPI the total number of differentially expressed genes identified in ‘PS’ declined from 451 to 359, while the total number of differentially expressed transcripts in ‘Pat 81’ increased from 187 to 849. Several deregulated transcripts coded for components of Ca2+ and jasmonic acid (JA) signalling pathways, as well as for other proteins related to defence mechanisms. Transcriptional differences in the activation of the JA-mediated response in ‘Pat 81’ compared to ‘PS’ suggested that JA response might be partially responsible for their observed differences in resistance.ConclusionsAs a result of this study we have identified for the first time a set of candidate genes involved in the root response to the infection of the pathogen causing melon vine decline. This information is useful for understanding the disease progression and resistance mechanisms few days after inoculation.

Effects of root architecture on response to melon vine decline

Summary Melon vine decline (MVD) is a complex disease for which only a few genotypes of Cucumis melo have been described as being tolerant. These genotypes were selected under different inoculum conditions, and little is known about the morphological or biochemical mechanisms of their tolerance to MVD. In order to study the tolerance mechanisms acting in different resistant sources, we conducted a comparative analysis of three tolerant (‘Doublon’, ‘Deltex’, and ‘Pat 81’) and two susceptible (‘Piel de Sapo’ and ‘Amarillo Canario’) melon cultivars. Their responses to non-infested soils, naturally infested soils, and soils artificially inoculated with the principal causal agents of MVD – Monosporascus cannonballus and Acremonium cucurbitacearum – were studied in pots in a greenhouse, and the results were compared with their field responses. We performed a combined study on lesions, root architecture, and root:vine balance. A combination of all of these traits can predict the level of MVD tolerance in infested fields better than the severity of root lesions alone. These features should be taken into account in breeding programmes for resistance to MVD.

Successful Wide Hybridization and Introgression Breeding in a Diverse Set of Common Peppers (Capsicum annuum) Using Different Cultivated Ají (C. baccatum) Accessions as Donor Parents

Capsicum baccatum, commonly known as ají, has been reported as a source of variation for many different traits to improve common pepper (C. annuum), one of the most important vegetables in the world. However, strong interspecific hybridization barriers exist between them. A comparative study of two wide hybridization approaches for introgressing C. baccatum genes into C. annuum was performed: i) genetic bridge (GB) using C. chinense and C. frutescens as bridge species; and, ii) direct cross between C. annuum and C. baccatum combined with in vitro embryo rescue (ER). A diverse and representative collection of 18 accessions from four cultivated species of Capsicum was used, including C. annuum (12), C. baccatum (3), C. chinense (2), and C. frutescens (1). More than 5000 crosses were made and over 1000 embryos were rescued in the present study. C. chinense performed as a good bridge species between C. annuum and C. baccatum, with the best results being obtained with the cross combination [C. baccatum (♀) × C. chinense (♂)] (♀) × C. annuum (♂), while C. frutescens gave poor results as bridge species due to strong prezygotic and postzygotic barriers. Virus-like-syndrome or dwarfism was observed in F1 hybrids when both C. chinense and C. frutescens were used as female parents. Regarding the ER strategy, the best response was found in C. annuum (♀) × C. baccatum (♂) crosses. First backcrosses to C. annuum (BC1s) were obtained according to the crossing scheme [C. annuum (♀) × C. baccatum (♂)] (♀) × C. annuum (♂) using ER. Advantages and disadvantages of each strategy are discussed in relation to their application to breeding programmes. These results provide breeders with useful practical information for the regular utilization of the C. baccatum gene pool in C. annuum breeding.

Use of synchronous e-learning at university degrees

Different types of Course Management Systems (CMS) are fully integrated in conventional and online courses in many Universities degrees. Although they are suitable for lecturer‐student information sharing, their asynchronous nature prevents an efficient interaction, which may hamper the learning process. As an alternative, synchronous virtual learning platforms can help fill the gaps in traditional CMS. However, there is very little feedback regarding its use in higher education. The Universitat Politècnica de València introduced in 2010 a synchronous e‐learning platform, named Poli[ReunióN], an Adobe Connect‐based online service. Poli[ReunióN] provides virtual sessions where interaction between lecturers and students is enabled by means of audio/video‐conferences and software application sharing. By following this path, Poli[ReunióN] provides an opportunity for planning new educational experiences where technology may help to achieve new learning objectives. However, the implementation of this tool still needs to be explored. In order to check its usefulness, we have performed a multidisciplinary learning experience involving a wide range of subjects over several degrees: Private Telecommunication Systems (degree in Telecommunications Engineering), Algorithms and Data Structure (degree in Computer Sciences), English for International Tourism (degree in Tourism Management), Genetics and Plant Breeding (degree in Agricultural Engineering), and a specific course for teachers’ training. The advantages and disadvantages of the use of Poli[ReunióN] in tutoring and in different learning activities proposed in the aforementioned degrees are discussed from both perspectives—lecturers and students. These experiences may help lecturers and other education professionals to adopt similar e‐learning tools.

IMPROVING ACTIVITIES TO DEVELOP SOFT SKILLS USING FLIPPED TEACHING IN HIGHER EDUCATION

Flipped Teaching is a methodology that enables students to be more active and self-sufficient in their learning process, since it overthrows the classical teacher-student responsibilities assigned within it, improving skills related to planning and autonomy in students. Moreover, in higher education, soft skills have to be developed during this learning process, since graduated students, which are about to enter in the working world, must be properly trained. In this regard, university professors have to provide students with good materials and efficient activities covering both aspects. At the Universitat Politècnica de València a group of 4 professors has been working in active methodologies and flipped teaching during the past 3 years, a period in which several experiences have been conducted. This paper summarizes a set of lessons learnt about the link that most popular faceto-face activities have with the acquisition of soft skills, and proposes some new actions aimed at improving the type of training activities carried out during the educational practice in the frame of flipped teaching. Based on our experience, we highlight some of the common failures and weak points in diverse teaching subjects like Computer Science, Telecommunications, Linguistics, Agricultural Science and Physics, and soft skills such as comprehension and integration, critical thinking and long-life learning, among others. The discussion and results are based on a bank of surveys in which students assess the validity of the educational practice and the influence of these practices on the development and acquisition of these soft skills.