André Farias de Moura

Chiral Inorganic Nanostructures

The field of chiral inorganic nanostructures is rapidly expanding. It started from the observation of strong circular dichroism during the synthesis of individual nanoparticles (NPs) and their assemblies and expanded to sophisticated synthetic protocols involving nanostructures from metals, semiconductors, ceramics, and nanocarbons. Besides the well-established chirality transfer from bioorganic molecules, other methods to impart handedness to nanoscale matter specific to inorganic materials were discovered, including three-dimentional lithography, multiphoton chirality transfer, polarization effects in nanoscale assemblies, and others. Multiple chiral geometries were observed with characteristic scales from ångströms to microns. Uniquely high values of chiral anisotropy factors that spurred the development of the field and differentiate it from chiral structures studied before, are now well understood; they originate from strong resonances of incident electromagnetic waves with plasmonic and excitonic states typical for metals and semiconductors. At the same time, distinct similarities with chiral supramolecular and biological systems also emerged. They can be seen in the synthesis and separation methods, chemical properties of individual NPs, geometries of the nanoparticle assemblies, and interactions with biological membranes. Their analysis can help us understand in greater depth the role of chiral asymmetry in nature inclusive of both earth and space. Consideration of both differences and similarities between chiral inorganic, organic, and biological nanostructures will also accelerate the development of technologies based on chiroplasmonic and chiroexcitonic effects. This review will cover both experiment and theory of chiral nanostructures starting with the origin and multiple components of mirror asymmetry of individual NPs and their assemblies. We shall consider four different types of chirality in nanostructures and related physical, chemical, and biological effects. Synthetic methods for chiral inorganic nanostructures are systematized according to chirality types, materials, and scales. We also assess technological prospects of chiral inorganic materials with current front runners being biosensing, chiral catalysis, and chiral photonics. Prospective venues for future fundamental research are discussed in the conclusion of this review.

Molecular Dynamics simulation of the sodium octanoate micelle in aqueous solution: comparison of force field parameters and molecular topology effects on the micellar structure

We have performed a series of 10 ns Molecular Dynamics simulations of the sodium octanoate micelle in aqueous solution in the constant NpT ensemble, at p = 1 bar and T = 300 K. Two molecular topologies were studied, one with all internal degrees of freedom and the other constraining bond stretching and angle bending degrees of freedom. Two Lennard-Jones parameters for sodium ions, namely the OPLS and ° Aqvist parameters, were used. The results show an artificial enhancement of stable sodium bridges between octanoate anions when the OPLS parameters for sodium are used. The ° Aqvist parameters give a micellar structure in good agreement with experimental and thermodynamical evidences. It is also observed that the aggregation of monomers is strongly dependent on the molecular topology. When the ° Aqvist parameters were employed, the model system without constraining geometry had one dissociated monomer after 10 ns, while the model system with bond length and bond angle constraining had five dissociated monomers after a 10 ns trajectory.

Aggregation Thermodynamics of Sodium Octanoate Micelles Studied by Means of Molecular Dynamics Simulations

The present work is aimed at studying the computation of the thermodynamic potentials that describe the stability of anionic surfactant molecules in micellar aggregates. We report a set of molecular dynamics simulations of a sodium octanoate micelle in aqueous solution using the umbrella sampling method along with the Jarzynski equality in order to compute the potential of mean force for the dissociation process of one surfactant molecule from a previously assembled micellar aggregate. The Jarzynski average was computed at several different temperatures in order to estimate the Gibbs energy of association for the octanoate anion, which was split into its enthalpic and entropic contributions. We also estimated the contributions arising from the polar head and the apolar tail for each thermodynamic potential, and a detailed picture emerged from these simulations. The aggregation is driven mostly by the Gibbs energy contribution arising from the hydrophobic tail, which was large enough to cancel out the unfavorable contribution from the polar head. Although the association process may be ascribed mostly to the transfer of the apolar tail to the micellar core, it should be noted that the polar head also contributed with a favorable entropic term to the overall Gibbs energy. These findings were rationalized by comparing the energetic and structural patterns of the hydration process of a free monomer in solution to an aggregated molecule. The interaction energy distributions presented at least two discernible populations and each population was related to a different structural pattern, as characterized by the radial distribution functions. Altogether, the changes in both the energy and structure of the hydration layer are consistent with the entropy-driven association of the surfactant into the micellar aggregate.

Análise de imagem em química analítica: empregando metodologias simples e didáticas para entender e prevenir o escurecimento de tecidos vegetais

A simple and didactic experiment was developed for image monitoring of the browning of fruit tissues caused by the enzyme polyphenol oxidase. The procedure, easy and inexpensive, is a valuable tool to teach and demonstrate the redox reaction between the enzyme and the natural polyphenols. To obtain the browning percentage for apple, pear and banana, digital photographs were employed, and the images were analyzed by means of Monte Carlo methods and digital analysis programs. The effects of several experimental conditions were studied, such as pH, light, temperature and the presence of oxygen or anti-oxidants. It was observed that each fruit presented a different condition that better minimized the oxidation process. The absence of oxygen and the application of a bissulphite solution were sufficient to keep the quality of all fruits tested.

Antimony-doped tin oxide nanocrystals: synthesis and solubility behavior in organic solvents.

This work focuses on the nonaqueous synthesis of antimony-doped tin oxide nanocrystals in the size range of 2-6 nm and the investigation of their solubility in organic solvents (CHCl(3) and THF) in the presence of amphiphilic molecules (oleic acid and oleylamine). To unravel the underlying processes, a set of molecular dynamics simulations is performed involving the compatibility of oleic acid and oleylamine in mixtures with both CHCl(3) and THF. The results show that the method is useful for obtaining the desired oxide, and that the interaction between amphiphilic molecules and solvents can be predicted by molecular dynamics simulations with very good qualitative agreement.

Revisiting the internal conformational dynamics and solvation properties of cyclodextrins

Molecular dynamics simulations were used to investigate the internal conformational dynamics and solvation properties of the three natural cyclodextrins, a-, b- and g-cyclodextrin in aqueous solution at room temperature. These glucose-derived oligosacharides present a molecular structure that confers them the ability to complex guest molecules and change their physicochemical properties. The structural behavior of cyclodextrins in solution is crucial for their complexation abilities. Analyses of the obtained trajectories show that inter-glucose hydrogen bonds between the secondary hydroxyl groups are present in solution, but show a very dynamical character where alternative hydrogen bonds to water molecules can be formed. Despite the lower hydrophilicity of the cyclodextrins inner-cavities, they were found to be solvated and the number of water molecules inside the cavity roughly doubles per glucose unit added to the ring. The residence times for water molecules inside the cavities are inversely proportional to the cavity size.

Chiromagnetic nanoparticles and gels

Boosting chiral nanoparticle responses Optical nanomaterials that combine chirality and magnetism are useful for magneto-optics and as chiral catalysts. Although chiral inorganic nanostructures can exhibit high circular dichroism, modulating this optical activity has usually required irreversible chemical changes. Yeom et al. synthesized paramagnetic cobalt oxide (Co3O4) nanoparticles with l- and d-cysteine surface ligands. These ligands created chiral distortions of the crystal lattices, and this anisotropy led to much stronger chiroptical activity. The circular dichroism in the ultraviolet of nanoparticle gels could be modulated with magnetic fields of ∼1.5 tesla. Science, this issue p. 309 Chiral amino acid ligands create lattice distortions that boost the chiroptical activity of cobalt oxide nanoparticles. Chiral inorganic nanostructures have high circular dichroism, but real-time control of their optical activity has so far been achieved only by irreversible chemical changes. Field modulation is a far more desirable path to chiroptical devices. We hypothesized that magnetic field modulation can be attained for chiral nanostructures with large contributions of the magnetic transition dipole moments to polarization rotation. We found that dispersions and gels of paramagnetic Co3O4 nanoparticles with chiral distortions of the crystal lattices exhibited chiroptical activity in the visible range that was 10 times as strong as that of nonparamagnetic nanoparticles of comparable size. Transparency of the nanoparticle gels to circularly polarized light beams in the ultraviolet range was reversibly modulated by magnetic fields. These phenomena were also observed for other nanoscale metal oxides with lattice distortions from imprinted amino acids and other chiral ligands. The large family of chiral ceramic nanostructures and gels can be pivotal for new technologies and knowledge at the nexus of chirality and magnetism.

Site-selective photoinduced cleavage and profiling of DNA by chiral semiconductor nanoparticles

AbstractGene editing is an important genetic engineering technique that enables gene manipulation at the molecular level. It mainly relies on engineered nucleases of biological origin, whose precise functions cannot be replicated in any currently known abiotic artificial material. Here, we show that chiral cysteine-modified CdTe nanoparticles can specifically recognize and, following photonic excitation, cut at the restriction site GAT′ATC (′ indicates the cut site) in double-stranded DNA exceeding 90 base pairs, mimicking a restriction endonuclease. Although photoinduced reactive oxygen species are found to be responsible for the cleavage activity, the sequence selectivity arises from the affinity between cysteine and the conformation of the specific DNA sequence, as confirmed by quantum-chemical calculations. In addition, we demonstrate non-enzymatic sequence-specific DNA incision in living cells and in vivo using these CdTe nanoparticles, which may help in the design of abiotic materials for gene editing and other biological applications.Genome editing relies on engineered nucleases to change an organism’s DNA, but has not yet been achieved using abiotic materials. Now, chiral cysteine-capped CdTe nanoparticles are found to specifically recognize and, following photoirradiation, cut between bases T and A at the GATATC restriction site in DNA with over 90 base pairs.

Investigating the spontaneous formation of SDS micelle in aqueous solution using a coarse-grained force field

A 1µs Molecular Dynamic simulation was performed with a realistic model system of Sodium Dodecyl Sulfate (SDS) micelles in aqueous solution, comprising of 360 DS-, 360 Na+ and 90000 water particles. After 300 ns three different micellar shapes and sizes 41, 68 and 95 monomers, were observed. The process led to stabilization in the total number of SDS clusters and an increase in the micellar radius to 2.23 nm, in agreement with experimental results. An important conclusion, is be aware that simulations employed in one aggregate, should be considered as a constraint. Size and shape distribution must be analyzed.

Solvation of Sodium Octanoate Micelles in Concentrated Urea Solution Studied by Means of Molecular Dynamics Simulations

The effects of urea on self-assembling remains a challenging topic on surface chemistry, and computational modeling may have a role on the unraveling of the molecular mechanisms underlying these effects. Bearing that in mind, we performed a set of molecular dynamics simulations to assess the effects of urea on the self-assembling properties of sodium octanoate, an anionic surfactant, as compared to the aggregation of the same surfactant in pure water as the solvent. The concentration of free monomers increased 3-fold in the presence of urea, in agreement with the accepted view that urea should increase monomer solubility. Regarding the size distribution of micellar aggregates, the urea solution favored smaller micelles and a narrower distribution. Preferential solvation by either water or urea changed along the surfactant molecules, from urea-rich shells around apolar atoms at the end of the hydrophobic tails to nearly no urea at the polar headgroups. This solvation profile is consistent with two different hypotheses from the literature: on one hand, urea molecules interact directly with apolar atoms from the hydrophobic tails, acting as a surfactant, and on the other hand the presence of urea molecules increases the hydration of polar sites. Another important observation regards the solvent structure, which exhibits a complex composition profile around both water and urea molecules. Although the solvent structure was appreciably different in each case, the free energy calculations for the dissociation of a pair of octanoate molecules pointed to a purely enthalpic free energy loss in urea solution, a finding that does not lend support to the third hypothesis that is often claimed as accounting for the urea effects, namely, that urea disrupts water structure and that this structural change decreases the hydrophobic effect due to an entropy change. The presence of urea had no significant effect on the molecular structure of the surfactant molecules, although it caused chain dynamics to become slower. The overall picture arising from the molecular-scale data extracted from our computational models is somewhat different from the traditional views about the structural and dynamical features of self-assembled surfactant systems, pointing out the need for more studies on other self-organized systems using a realistic model system as a way to achieve a more detailed picture.