André Megali Amado

Singlet oxygen in the coupled photochemical and biochemical oxidation of dissolved organic matter.

Dissolved organic matter (DOM) is a significant (>700 Pg) global C pool. Transport of terrestrial DOM to the inland waters and coastal zones represents the largest flux of reduced C from land to water (215 Tg yr(-1)) (Meybeck, M. Am. J. Sci. 1983, 282, 401-450). Oxidation of DOM by interdependent photochemical and biochemical processes largely controls the fate of DOM entering surface waters. Reactive oxygen species (ROS) have been hypothesized to play a significant role in the photooxidation of DOM, because they may oxidize the fraction of DOM that is inaccessible to direct photochemical degradation by sunlight. We followed the effects of photochemically produced singlet oxygen ((1)O(2)) on DOM by mass spectrometry with (18)O-labeled oxygen, to understand how (1)O(2)-mediated transformations of DOM may lead to altered DOM bioavailability. The photochemical oxygen uptake by DOM attributed to (1)O(2) increased with DOM concentration, yet it remained a minority contributor to photochemical oxygen uptake even at very high DOM concentrations. When DOM samples were exposed to (1)O(2)-generating conditions (Rose Bengal and visible light), increases were observed in DOM constituents with higher oxygen content and release of H(2)O(2) was detected. Differential effects of H(2)O(2) and (1)O(2)-treated DOM showed that (1)O(2)-treated DOM led to slower bacterial growth rates relative to unmodified DOM. Results of this study suggested that the net effect of the reactions between singlet oxygen and DOM may be production of partially oxidized substrates with correspondingly lower potential biological energy yield.

Tropical freshwater ecosystems have lower bacterial growth efficiency than temperate ones.

Current models and observations indicate that bacterial respiration should increase and growth efficiency (BGE) should decrease with increasing temperatures. However, these models and observations are mostly derived from data collected in temperate regions, and the tropics are under-represented. The aim of this work was to compare bacterial metabolism, namely bacterial production (BP) and respiration (BR), bacterial growth efficiency (BGE) and bacterial carbon demand (BCD) between tropical and temperate ecosystems via a literature review and using unpublished data. We hypothesized that (1) tropical ecosystems have higher metabolism than temperate ones and, (2) that BGE is lower in tropical relative to temperate ecosystems. We collected a total of 498 coupled BP and BR observations (Ntotal = 498; Ntemperate = 301; Ntropical = 197), calculated BGE (BP/(BP+BR)) and BCD (BP+BR) for each case and examined patterns using a model II regression analysis and compared each parameter between the two regions using non-parametric Mann–Whitney U test. We observed a significant positive linear regression between BR and BP for the whole dataset, and also for tropical and temperate data separately. We found that BP, BR and BCD were higher in the tropics, but BGE was lower compared to temperate regions. Also, BR rates per BP unit were at least two fold higher in the tropics than in temperate ecosystems. We argue that higher temperature, nutrient limitation, and light exposure all contribute to lower BGE in the tropics, mediated through effects on thermodynamics, substrate stoichiometry, nutrient availability and interactions with photochemically produced compounds. More efforts are needed in this study area in the tropics, but our work indicates that bottom-up (nutrient availability and resource stoichiometry) and top-down (grazer pressure) processes, coupled with thermodynamic constraints, might contribute to the lower BGE in the tropics relative to temperate regions.

Climate change in Brazil: perspective on the biogeochemistry of inland waters

Although only a small amount of the Earths water exists as continental surface water bodies, this compartment plays an important role in the biogeochemical cycles connecting the land to the atmosphere. The territory of Brazil encompasses a dense river net and enormous number of shallow lakes. Human actions have been heavily influenced by the inland waters across the country. Both biodiversity and processes in the water are strongly driven by seasonal fluvial forces and/or precipitation. These macro drivers are sensitive to climate changes. In addition to their crucial importance to humans, inland waters are extremely rich ecosystems, harboring high biodiversity, promoting landscape equilibrium (connecting ecosystems, maintaining animal and plant flows in the landscape, and transferring mass, nutrients and inocula), and controlling regional climates through hydrological-cycle feedback. In this contribution, we describe the aquatic ecological responses to climate change in a conceptual perspective, and we then analyze the possible climate-change scenarios in different regions in Brazil. We also indentify some potential biogeochemical signals in running waters, natural lakes and man-made impoundments. The possible future changes in climate and aquatic ecosystems in Brazil are highly uncertain. Inland waters are pressured by local environmental changes because of land uses, landscape fragmentation, damming and diversion of water bodies, urbanization, wastewater load, and level of pollutants can alter biogeochemical patterns in inland waters over a shorter term than can climate changes. In fact, many intense environmental changes may enhance the effects of changes in climate. Therefore, the maintenance of key elements within the landscape and avoiding extreme perturbation in the systems are urgent to maintain the sustainability of Brazilian inland waters, in order to prevent more catastrophic future events.

Disentangling the Interactions Between Photochemical and Bacterial Degradation of Dissolved Organic Matter: Amino Acids Play a Central Role

Photochemical and bacterial degradation are important pathways to carbon mineralization and can be coupled in dissolved organic matter (DOM) decomposition. However, details of several mechanisms of the coupled photochemical and biological processing of DOM remain too poorly understood to achieve accurate predictions of the impact of these processes on DOM fate and reactivity. The aim of this study was to evaluate how photochemical degradation of amino acids affects bacterial metabolism and whether or not photochemical degradation of DOM competes for amino acids with biological processes. We examined the interactions between photochemical and bacterial degradation dynamics using a mixture of 18 amino acids and examined their dynamics and turnover rates within a larger pool of allochthonous or autochthonous DOM. We observed that photochemical exposure of DOM containing amino acids led to delayed biomass production (even though the final biomass did not differ), most likely due to a need for upregulation of biosynthetic pathways for amino acids that were damaged by photochemically produced reactive oxygen species (ROS). This response was most pronounced in bacterial communities where the abundance of photosensitive amino acids was highest (amended treatments and autochthonous DOM) and least pronounced when the abundance of these amino acids was low (unamended and allochthonous DOM), likely because these bacteria already had these biosynthetic pathways functioning. We observed both a cost and benefit associated with photochemical exposure of DOM. We observed a cost associated with photochemically produced ROS that partially degrade key amino acids and a benefit associated with an increase in the availability of other compounds in the DOM. Bacteria growing on DOM sources that are low in labile amino acids, such as those in terrestrially influenced environments, experience more of the benefits associated with photochemical exposure, whereas bacteria growing in more amino acid-rich environments, such as eutrophic and less terrestrially influenced waters, experience a higher cost due to the increased necessity of salvage pathways for these essential amino acids. Finally, we propose a conceptual model whereby the effects of DOM photochemical degradation on microbial metabolism result from the balance between two mechanisms: One is dependent on the DOM sources, and the other is dependent on the DOM concentration in natural systems.

Potential effects of UV radiation on photosynthetic structures of the bloom-forming cyanobacterium Cylindrospermopsis raciborskii CYRF-01

Cyanobacteria are aquatic photosynthetic microorganisms. While of enormous ecological importance, they have also been linked to human and animal illnesses around the world as a consequence of toxin production by some species. Cylindrospermopsis raciborskii, a filamentous nitrogen-fixing cyanobacterium, has attracted considerable attention due to its potential toxicity and ecophysiological adaptability. We investigated whether C. raciborskii could be affected by ultraviolet (UV) radiation. Non-axenic cultures of C. raciborskii were exposed to three UV treatments (UVA, UVB, or UVA + UVB) over a 6 h period, during which cell concentration, viability and ultrastructure were analyzed. UVA and UVA + UVB treatments showed significant negative effects on cell concentration (decreases of 56.4 and 64.3%, respectively). This decrease was directly associated with cell death as revealed by a cell viability fluorescent probe. Over 90% of UVA + UVB- and UVA-treated cells died. UVB did not alter cell concentration, but reduced cell viability in almost 50% of organisms. Transmission electron microscopy (TEM) revealed a drastic loss of thylakoids, membranes in which cyanobacteria photosystems are localized, after all treatments. Moreover, other photosynthetic- and metabolic-related structures, such as accessory pigments and polyphosphate granules, were damaged. Quantitative TEM analyses revealed a 95.8% reduction in cell area occupied by thylakoids after UVA treatment, and reduction of 77.6 and 81.3% after UVB and UVA + UVB treatments, respectively. Results demonstrated clear alterations in viability and photosynthetic structures of C. raciborskii induced by various UV radiation fractions. This study facilitates our understanding of the subcellular organization of this cyanobacterium species, identifies specific intracellular targets of UVA and UVB radiation and reinforces the importance of UV radiation as an environmental stressor.

Redfield ratios in inland waters: higher biological control of C:N:P ratios in tropical semi-arid high water residence time lakes

The canonical Redfield C:N:P ratio for algal biomass is often not achieved in inland waters due to higher C and N content and more variability when compared to the oceans. This has been attributed to much lower residence times and higher contributions of the watershed to the total organic matter pool of continental ecosystems. In this study we examined the effect of water residence times in low latitude lakes (in a gradient from humid to a semi-arid region) on seston elemental ratios in different size fractions. We used lake water specific conductivity as a proxy for residence time in a region of Eastern Brazil where there is a strong precipitation gradient. The C:P ratios decreased in the seston and bacterial size-fractions and increased in the dissolved fraction with increasing water retention time, suggesting uptake of N and P from the dissolved pool. Bacterial abundance, production and respiration increased in response to increased residence time and intracellular nutrient availability in agreement with the growth rate hypothesis. Our results reinforce the role of microorganisms in shaping the chemical environment in aquatic systems particularly at long water residence times and highlights the importance of this factor in influencing ecological stoichiometry in all aquatic ecosystems.

The Partitioning of Carbon Biomass among the Pico- and Nano-plankton Community in the South Brazilian Bight during a Strong Summer Intrusion of South Atlantic Central Water

To investigate how pico- and nanoplankton respond to oceanographic conditions in the Southwestern Atlantic Ocean, we assessed the influence of a summer intrusion of the South Atlantic Central Water (SACW) on the spatial and vertical dynamics of planktonic abundance and carbon biomass across environmental gradients. Seawater samples were collected from six depths within the euphotic zone at nine oceanographic stations in a transect on the Brazilian continental shelf in January 2013. The abundance of pico- and nanoplankton populations was determined by flow cytometry, and carbon biomass was calculated based on conversion factors from the literature. The autotrophic Synechococcus spp., picoeukaryotes and nanoeukaryotes were more abundant in the surface layers of the innermost stations influenced by Coastal Water (maximum of 1.19x105, 1.5x104, and 8.61x103 cell·mL−1, respectively), whereas Prochlorococcus spp. dominated (max. of 6.57x104 cell·mL−1) at the outermost stations influenced by Tropical Water and in the uplifting layers of the SACW around a depth of 100 m. Numerically, heterotrophic bacterial populations were predominant, with maximum concentrations (2.11x106 cell·mL−1) recorded in the surface layers of the inner and mid shelves in Coastal Water and the upper limits of the SACW. Nutrient-rich (high silicate and phosphate) and relatively less saline waters enhanced the picoeukaryotic biomass, while Synechococcus and heterotrophic bacteria were linked to higher temperatures, lower salinities, and higher inputs of ammonia and dissolved organic carbon. The relative importance of each group to carbon biomass partitioning under upwelling conditions is led by heterotrophic bacteria, followed by picoeukaryotes, Synechococcus and Prochlorococcus, and when the SACW is not as influential, the relative contribution of each phytoplanktonic group is more evenly distributed. In addition to habitat preferences, the physical structure of oligotrophic waters has a large impact on the vertical and spatial distribution patterns of picoplankton, reflecting the strong effect of the SACW intrusion.

flowDiv: a new pipeline for analyzing flow cytometric diversity

1 Flow cytometry (FCM) is a powerful analytical tool that is widely used worldwide, as it allows 2 the depiction of the innate complexity of a vast range of biological systems in few seconds. It 3 is a technique based on the spectroscopic properties of suspended particles that allows data to 4 be graphically summarized by biplots, known as cytograms. Such versatility got raises to differ5 ent analytical protocols which are commonly not interchangeable among expertise fields. In this 6 sense, environmental sciences, in particular, faces major concerns when dealing with the adoption 7 of non-specific protocols a particularity essentially driven by the highly heterogeneous nature of 8 environmental samples. Such intrinsic variety makes it difficult to adjust formal analytical protocols 9 that both keep standardized mathematical rationales and retain a clear ecological meaning, namely 10 when the focus of the analysis rely on the cytometric diversity the quantitative evaluation of the 11 differences among cytograms. Despite of the availability of promising tools conceived or adapted 12 to approach cytometric diversity, most of them face common technical challenges, as perspective 13 adjustment, dilution correction, resolution setup and enlightenment on the role of cytograms subre14 gions to global diversity. To address such questions and harmonize formal mathematical rationales 15 with coherent biological interpretation, we have developed flowDiv a pipeline designed for envi16 ronmental flow cytometry data analysis that handles data through consolidated macroecological 17 methods to offer biologically apprehensive outputs. flowDiv was implemented using R language 18 and has been published on CRAN (https://cran.r-project.org/web/packages/flowDiv/) with source 19 code also available on GitHub (https://github.com/bmsw/flowDiv). Applied to a dataset from 31 20 freshwater bodies in Argentinian Patagonia, flowDiv uncovered significant aspects regrading envi21 ronmental cytometric diversity, as its relation with taxonomic diversity and the role of environmental 22 variables on cytometric diversity. 23 1 PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.26934v1 | CC BY 4.0 Open Access | rec: 16 May 2018, publ: 16 May 2018

Scaling relationships among drivers of aquatic respiration in temperate lakes: from the smallest to the largest freshwater ecosystems

Abstract To address how various environmental parameters control or constrain planktonic respiration (PR), we used geometric scaling relationships and established biological scaling laws to derive quantitative predictions for the relationships among key drivers of PR. We then used empirical measurements of PR and environmental (soluble reactive phosphate [SRP], carbon [DOC], chlorophyll a [Chl-a)], and temperature) and landscape parameters (lake area [LA] and watershed area [WA]) from a set of 44 lakes that varied in size and trophic status to test our hypotheses. We found that landscape-level processes affected PR through direct effects on DOC and temperature and indirectly via SRP. In accordance with predictions made from known relationships and scaling laws, scale coefficients (the parameter that describes the shape of a relationship between 2 variables) were found to be negative and have an absolute value <1. Biological parameters scaled positively with physical and chemical processes in accordance with those predicted from theory or previous studies (i.e., temperature >1, others <1). We also found evidence of a significant relationship between temperature and SRP. Because our dataset included measurements of respiration from small pond catchments to the largest body of freshwater on the planet, Lake Superior, these findings should be applicable to controls of PR for the great majority of temperate aquatic ecosystems.