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Dive into the research topics where Andrei V. Chernyshev is active.

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Featured researches published by Andrei V. Chernyshev.


Applied Optics | 2005

Experimental and theoretical study of light scattering by individual mature red blood cells by use of scanning flow cytometry and a discrete dipole approximation

Maxim A. Yurkin; Konstantin A. Semyanov; Peter Tarasov; Andrei V. Chernyshev; Alfons G. Hoekstra; Valeri P. Maltsev

Elastic light scattering by mature red blood cells (RBCs) was theoretically and experimentally analyzed by use of the discrete dipole approximation (DDA) and scanning flow cytometry (SFC), respectively. SFC permits measurement of the angular dependence of the light-scattering intensity (indicatrix) of single particles. A mature RBC is modeled as a biconcave disk in DDA simulations of light scattering. We have studied the effect of RBC orientation related to the direction of the light incident upon the indicatrix. Numerical calculations of indicatrices for several axis ratios and volumes of RBC have been carried out. Comparison of the simulated indicatrices and indicatrices measured by SFC showed good agreement, validating the biconcave disk model for a mature RBC. We simulated the light-scattering output signals from the SFC with the DDA for RBCs modeled as a disk-sphere and as an oblate spheroid. The biconcave disk, the disk-sphere, and the oblate spheroid models have been compared for two orientations, i.e., face-on and rim-on incidence, relative to the direction of the incident beam. Only the oblate spheroid model for rim-on incidence gives results similar to those of the rigorous biconcave disk model.


Applied Optics | 2004

Single-particle sizing from light scattering by spectral decomposition

Konstantin A. Semyanov; Peter Tarasov; Alexey Zharinov; Andrei V. Chernyshev; Alfons G. Hoekstra; Valeri P. Maltsev

A Fourier transform was applied to size an individual spherical particle from an angular light-scattering pattern. The position of the peak in the amplitude spectrum has a strong correlation with the particle size. A linear equation retrieved from regression analysis of theoretically simulated patterns provides a relation between the particle size and the location of the amplitude spectrums peak. The equation can be successfully applied to characterize particles of size parameters that range from 8 to 180 (corresponding to particle sizes that range from 1.2 to 27.2 microm at a wavelength of 0.633 microm). The precision of particle sizing depends on the refractive index and reaches a value of 60 nm within refractive-index region from 1.35 to 1.70. We have analyzed four samples of polystyrene microspheres with mean diameters of 1.9, 2.6, 3.0, and 4.2 microm and a sample of isovolumetrically sphered erythrocytes with a scanning flow cytometer to compare the accuracy of our new method with that of others.


Journal of Biomedical Optics | 2013

Accurate measurement of volume and shape of resting and activated blood platelets from light scattering

Alexander E. Moskalensky; Maxim A. Yurkin; Anastasiya I. Konokhova; Dmitry I. Strokotov; Vyacheslav M. Nekrasov; Andrei V. Chernyshev; Galina A. Tsvetovskaya; Elena D. Chikova; Valeri P. Maltsev

Abstract. We introduce a novel approach for determination of volume and shape of individual blood platelets modeled as an oblate spheroid from angle-resolved light scattering with flow-cytometric technique. The light-scattering profiles (LSPs) of individual platelets were measured with the scanning flow cytometer and the platelet characteristics were determined from the solution of the inverse light-scattering problem using the precomputed database of theoretical LSPs. We revealed a phenomenon of parameter compensation, which is partly explained in the framework of anomalous diffraction approximation. To overcome this problem, additional a priori information on the platelet refractive index was used. It allowed us to determine the size of each platelet with subdiffraction precision and independent of the particular value of the platelet aspect ratio. The shape (spheroidal aspect ratio) distributions of platelets showed substantial differences between native and activated by 10 μM adenosine diphosphate samples. We expect that the new approach may find use in hematological analyzers for accurate measurement of platelet volume distribution and for determination of the platelet activation efficiency.


Journal of Biomedical Optics | 2012

Light-scattering flow cytometry for identification and characterization of blood microparticles

Anastasiya I. Konokhova; Maxim A. Yurkin; Alexander E. Moskalensky; Andrei V. Chernyshev; Galina A. Tsvetovskaya; Elena D. Chikova; Valeri P. Maltsev

We describe a novel approach to study blood microparticles using the scanning flow cytometer, which measures light scattering patterns (LSPs) of individual particles. Starting from platelet-rich plasma, we separated spherical microparticles from non-spherical plasma constituents, such as platelets and cell debris, based on similarity of their LSP to that of sphere. This provides a label-free method for identification (detection) of microparticles, including those larger than 1 μm. Next, we rigorously characterized each measured particle, determining its size and refractive index including errors of these estimates. Finally, we employed a deconvolution algorithm to determine size and refractive index distributions of the whole population of microparticles, accounting for largely different reliability of individual measurements. Developed methods were tested on a blood sample of a healthy donor, resulting in good agreement with literature data. The only limitation of this approach is size detection limit, which is currently about 0.5 μm due to used laser wavelength of 0.66 μm.


Cytometry | 1999

Particle classification from light scattering with the scanning flow cytometer

Alexander N. Shvalov; Ivan V. Surovtsev; Andrei V. Chernyshev; Juhani T. Soini; Valeri P. Maltsev

BACKGROUND The differential light-scattering pattern, an indicatrix, provides the most complete characterization of the optical properties of a particle. Particle classification can be performed on the basis of particle parameters retrieved from the indicatrices. This classification extends the ability of flow cytometry in particle recognition. METHODS The scanning flow cytometer (SFC) permits an acquisition of traces of light scattering signals, i.e., native SFC traces, from single particles. The acquired native SFC traces are transformed into indicatrices. The performance of the SFC in measurements of indicatrices has been demonstrated for the following particles: lymphocytes, erythrocytes, polystyrene particles, and milk-fat particles. RESULTS The structure and profile of the indicatrix for each particle type have been found to be unique. Classification of polystyrene particles has been performed on the basis of the map formed by particle refractive index and size. The polystyrene particles were classified using this map into different size categories ranging from 1.4-7 microm, with a size deviation of 0.07 microm. CONCLUSIONS The method based on analysis of native SFC traces shows better performance in particle classification than the method based on the particle refractive index and size map. The classification performance of the SFC will be useful, for example, for particle sorting and particle identification, and with additional fluorescent measurements may have applications in multiparameter particle-based immunoassay.


Applied Optics | 1995

MEASUREMENT OF SCATTERING PROPERTIES OF INDIVIDUAL PARTICLES WITH A SCANNING FLOW CYTOMETER

Andrei V. Chernyshev; V. I. Prots; Alexander Doroshkin; Valeri P. Maltsev

A hydrofocusing head with an optical cuvette has been developed for the flow cytometer to generate complete scatter patterns of single particles at scattering angles ranging from 10° to 120°. The scatter signal has been measured as a function of the angle (a flying indicatrix) by the use of particle motion within a scanning system of the flow cytometer by the use of a single photomultiplier. Scattering data measured with the flow cytometer have been compared with those calculated from Mie theory for latex particles. A calculation algorithm has been used to estimate the size and the refractive index of spherical particles from the scattering data measured.


Cytometry | 1998

A new design of the flow cuvette and optical set‐up for the scanning flow cytometer

Juhani T. Soini; Andrei V. Chernyshev; Pekka Hänninen; Erkki Soini; Valeri P. Maltsev

We introduce a new design for the optical cuvette and a new optical lay-out for the Scanning Flow Cytometer (SFC) that permits measurement of the angular dependency of the scattered light from individual moving particles. The improved optical scheme of the SFC allows measurement of the angular scattering pattern of individual particles at polar angles from 10 degrees to 120 degrees with integration at azimuthal angles from 0 degrees to 360 degrees and with angular resolution of better than 0.5 degrees. The performance of the SFC is demonstrated using certified polystyrene particles as reference material The aim of this work is to develop a flow cytometer, which, by recording the entire light scattering pattern of individual biological particles, would provide more information about the particle structure than the ordinary wide angle, forward and side scattering concepts.


Measurement Science and Technology | 1997

Absolute real-time determination of size and refractive index of individual microspheres

Valeri P. Maltsev; Andrei V. Chernyshev; Konstantin A. Semyanov; Erkki Soini

The flying light scattering indicatrix (FLSI) method has been improved by employing a set of empirical equations combined with a decision tree which has been used for simultaneous real-time measurements and calculation of the size and refractive index of individual spherical particles. Empirical equations have been developed for determination of particle parameters over the range m to m and 1.37 to 1.60 for size and refractive index respectively. The FLSI method has been used for determination of the precision of a scanning flow cytometer for analysis of individual particles. A two-dimensional map (size X refractive index) was created for polystyrene latex and milk fat particles.


Cytometry Part A | 2016

Super‐resolved calibration‐free flow cytometric characterization of platelets and cell‐derived microparticles in platelet‐rich plasma

Anastasiya I. Konokhova; Darya N. Chernova; Alexander E. Moskalensky; Dmitry I. Strokotov; Maxim A. Yurkin; Andrei V. Chernyshev; Valeri P. Maltsev

Importance of microparticles (MPs), also regarded as extracellular vesicles, in many physiological processes and clinical conditions motivates one to use the most informative and precise methods for their characterization. Methods based on individual particle analysis provide statistically reliable distributions of MP population over characteristics. Although flow cytometry is one of the most powerful technologies of this type, the standard forward‐versus‐side‐scattering plots of MPs and platelets (PLTs) overlap considerably because of similarity of their morphological characteristics. Moreover, ordinary flow cytometry is not capable of measurement of size and refractive index (RI) of MPs. In this study, we 1) employed the potential of the scanning flow cytometer (SFC) for identification and characterization of MPs from light scattering; 2) suggested the reference method to characterize MP morphology (size and RI) with high precision; and 3) determined the lowest size of a MP that can be characterized from light scattering with the SFC. We equipped the SFC with 405 and 488 nm lasers to measure the light‐scattering profiles and side scattering from MPs, respectively. The developed two‐stage method allowed accurate separation of PLTs and MPs in platelet‐rich plasma. We used two optical models for MPs, a sphere and a bisphere, in the solution of the inverse light‐scattering problem. This solution provides unprecedented precision in determination of size and RI of individual spherical MPs—median uncertainties (standard deviations) were 6 nm and 0.003, respectively. The developed method provides instrument‐independent quantitative information on MPs, which can be used in studies of various factors affecting MP population.


Journal of Cellular Biochemistry | 2012

Arrangement of nuclear structures is not transmitted through mitosis but is identical in sister cells.

Darya Y. Orlova; Lenka Stixová; Stanislav Kozubek; Hinco J. Gierman; Gabriela Šustáčková; Andrei V. Chernyshev; Ruslan N. Medvedev; Soňa Legartová; Rogier Versteeg; Pavel Matula; Roman Stoklasa; Eva Bártová

Although it is well known that chromosomes are non‐randomly organized during interphase, it is not completely clear whether higher‐order chromatin structure is transmitted from mother to daughter cells. Therefore, we addressed the question of how chromatin is rearranged during interphase and whether heterochromatin pattern is transmitted after mitosis. We additionally tested the similarity of chromatin arrangement in sister interphase nuclei. We noticed a very active cell rotation during interphase, especially when histone hyperacetylation was induced or transcription was inhibited. This natural phenomenon can influence the analysis of nuclear arrangement. Using photoconversion of Dendra2‐tagged core histone H4 we showed that the distribution of chromatin in daughter interphase nuclei differed from that in mother cells. Similarly, the nuclear distribution of heterochromatin protein 1β (HP1β) was not completely identical in mother and daughter cells. However, identity between mother and daughter cells was in many cases evidenced by nucleolar composition. Moreover, morphology of nucleoli, HP1β protein, Cajal bodies, chromosome territories, and gene transcripts were identical in sister cell nuclei. We conclude that the arrangement of interphase chromatin is not transmitted through mitosis, but the nuclear pattern is identical in naturally synchronized sister cells. It is also necessary to take into account the possibility that cell rotation and the degree of chromatin condensation during functionally specific cell cycle phases might influence our view of nuclear architecture. J. Cell. Biochem. 113: 3313–3329, 2012.

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Valeri P. Maltsev

Novosibirsk State University

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Maxim A. Yurkin

Novosibirsk State University

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Dmitry I. Strokotov

Novosibirsk State University

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Darya Y. Orlova

Academy of Sciences of the Czech Republic

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Konstantin V. Gilev

Novosibirsk State University

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Eva Bártová

Academy of Sciences of the Czech Republic

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Stanislav Kozubek

Academy of Sciences of the Czech Republic

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