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Dive into the research topics where Andrew D. Jones is active.

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Featured researches published by Andrew D. Jones.


BioScience | 2010

Effects of US Maize Ethanol on Global Land Use and Greenhouse Gas Emissions: Estimating Market-mediated Responses

Thomas W. Hertel; Alla A. Golub; Andrew D. Jones; Michael O'Hare; Richard J. Plevin; Daniel M. Kammen

Releases of greenhouse gases (GHG) from indirect land-use change triggered by crop-based biofuels have taken center stage in the debate over the role of biofuels in climate policy and energy security. This article analyzes these releases for maize ethanol produced in the United States. Factoring market-mediated responses and by-product use into our analysis reduces cropland conversion by 72% from the land used for the ethanol feedstock. Consequently, the associated GHG release estimated in our framework is 800 grams of carbon dioxide per megajoule (MJ); 27 grams per MJ per year, over 30 years of ethanol production, or roughly a quarter of the only other published estimate of releases attributable to changes in indirect land use. Nonetheless, 800 grams are enough to cancel out the benefits that corn ethanol has on global warming, thereby limiting its potential contribution in the context of Californias Low Carbon Fuel Standard.


Environmental Science & Technology | 2010

Greenhouse Gas Emissions from Biofuels' Indirect Land Use Change Are Uncertain but May Be Much Greater than Previously Estimated

Richard J. Plevin; Michael O'Hare; Andrew D. Jones; Margaret S. Torn; Holly K. Gibbs

The life cycle greenhouse gas (GHG) emissions induced by increased biofuel consumption are highly uncertain: individual estimates vary from each other and each has a wide intrinsic error band. Using a reduced-form model, we estimated that the bounding range for emissions from indirect land-use change (ILUC) from US corn ethanol expansion was 10 to 340 g CO(2) MJ(-1). Considering various probability distributions to model parameters, the broadest 95% central interval, i.e., between the 2.5 and 97.5%ile values, ranged from 21 to 142 g CO(2)e MJ(-1). ILUC emissions from US corn ethanol expansion thus range from small, but not negligible, to several times greater than the life cycle emissions of gasoline. The ILUC emissions estimates of 30 g CO(2) MJ(-1) for the California Air Resources Board and 34 g CO(2)e MJ(-1) by USEPA (for 2022) are at the low end of the plausible range. The lack of data and understanding (epistemic uncertainty) prevents convergence of judgment on a central value for ILUC emissions. The complexity of the global system being modeled suggests that this range is unlikely to narrow substantially in the near future. Fuel policies that require narrow bounds around point estimates of life cycle GHG emissions are thus incompatible with current and anticipated modeling capabilities. Alternative policies that address the risks associated with uncertainty are more likely to achieve GHG reductions.


Science | 2016

Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium

Josephine M. Bryant; Dorothy M Grogono; Daniela Rodriguez-Rincon; Isobel Everall; Karen P. Brown; Pablo Moreno; Deepshikha Verma; Emily Hill; Judith Drijkoningen; Charles R. Esther; Peadar G. Noone; Olivia Giddings; Scott C. Bell; Rachel Thomson; Claire E. Wainwright; Chris Coulter; Sushil Pandey; Michelle E. Wood; Rebecca E Stockwell; Kay A. Ramsay; L. Sherrard; Timothy J. Kidd; Nassib Jabbour; Graham R. Johnson; Luke D. Knibbs; Lidia Morawska; Peter D. Sly; Andrew D. Jones; Diana Bilton; Ian Laurenson

Global spread of aggressive mycobacteria Many mycobacteria, in addition to those causing leprosy and tuberculosis, are capable of infecting humans. Some can be particularly dangerous in patients suffering from immunosuppression or chronic disease, such as cystic fibrosis (CF). Bryant et al. observed clusters of near-identical isolates of drug-resistant Mycobacterium abscessus in patients reporting to CF clinics. The similarity of the isolates suggests transmission between patients, rather than environmental acquisition. Although this bacterium is renowned for its environmental resilience, the mechanism for its long-distance transmission among the global CF patient community remains a puzzle. Science, this issue p. 751 Near-identical isolates of Mycobacterium abscessus indicate recent chains of transmission among cystic fibrosis patients. Lung infections with Mycobacterium abscessus, a species of multidrug-resistant nontuberculous mycobacteria, are emerging as an important global threat to individuals with cystic fibrosis (CF), in whom M. abscessus accelerates inflammatory lung damage, leading to increased morbidity and mortality. Previously, M. abscessus was thought to be independently acquired by susceptible individuals from the environment. However, using whole-genome analysis of a global collection of clinical isolates, we show that the majority of M. abscessus infections are acquired through transmission, potentially via fomites and aerosols, of recently emerged dominant circulating clones that have spread globally. We demonstrate that these clones are associated with worse clinical outcomes, show increased virulence in cell-based and mouse infection models, and thus represent an urgent international infection challenge.


Journal of Climate | 2012

Interactive Crop Management in the Community Earth System Model (CESM1): Seasonal Influences on Land–Atmosphere Fluxes

Samuel Levis; Gordon B. Bonan; Erik Kluzek; Peter E. Thornton; Andrew D. Jones; William J. Sacks; Christopher J. Kucharik

AbstractThe Community Earth System Model, version 1 (CESM1) is evaluated with two coupled atmosphere–land simulations. The CTRL (control) simulation represents crops as unmanaged grasses, while CROP represents a crop managed simulation that includes special algorithms for midlatitude corn, soybean, and cereal phenology and carbon allocation. CROP has a more realistic leaf area index (LAI) for crops than CTRL. CROP reduces winter LAI and represents the spring planting and fall harvest explicitly. At the peak of the growing season, CROP simulates higher crop LAI. These changes generally reduce the latent heat flux but not around peak LAI (late spring/early summer). In midwestern North America, where corn, soybean, and cereal abundance is high, simulated peak summer precipitation declines and agrees better with observations, particularly when crops emerge late as is found from a late planting sensitivity simulation (LateP). Differences between the CROP and LateP simulations underscore the importance of simul...


Journal of Climate | 2013

Greenhouse Gas Policy Influences Climate via Direct Effects of Land-Use Change

Andrew D. Jones; William D. Collins; James A. Edmonds; Margaret S. Torn; Anthony C. Janetos; Katherine Calvin; Allison M. Thomson; Louise M. Chini; Jiafu Mao; Xiaoying Shi; Peter E. Thornton; George C. Hurtt; Marshall A. Wise

AbstractProposed climate mitigation measures do not account for direct biophysical climate impacts of land-use change (LUC), nor do the stabilization targets modeled for phase 5 of the Coupled Model Intercomparison Project (CMIP5) representative concentration pathways (RCPs). To examine the significance of such effects on global and regional patterns of climate change, a baseline and an alternative scenario of future anthropogenic activity are simulated within the Integrated Earth System Model, which couples the Global Change Assessment Model, Global Land-Use Model, and Community Earth System Model. The alternative scenario has high biofuel utilization and approximately 50% less global forest cover than the baseline, standard RCP4.5 scenario. Both scenarios stabilize radiative forcing from atmospheric constituents at 4.5 W m−2 by 2100. Thus, differences between their climate predictions quantify the biophysical effects of LUC. Offline radiative transfer and land model simulations are also utilized to iden...


Environmental Science & Technology | 2010

The climate impacts of bioenergy systems depend on market and regulatory policy contexts.

Derek Lemoine; Richard J. Plevin; Avery Cohn; Andrew D. Jones; Adam R. Brandt; Sintana E. Vergara; Daniel M. Kammen

Biomass can help reduce greenhouse gas (GHG) emissions by displacing petroleum in the transportation sector, by displacing fossil-based electricity, and by sequestering atmospheric carbon. Which use mitigates the most emissions depends on market and regulatory contexts outside the scope of attributional life cycle assessments. We show that bioelectricitys advantage over liquid biofuels depends on the GHG intensity of the electricity displaced. Bioelectricity that displaces coal-fired electricity could reduce GHG emissions, but bioelectricity that displaces wind electricity could increase GHG emissions. The electricity displaced depends upon existing infrastructure and policies affecting the electric grid. These findings demonstrate how model assumptions about whether the vehicle fleet and bioenergy use are fixed or free parameters constrain the policy questions an analysis can inform. Our bioenergy life cycle assessment can inform questions about a bioenergy mandates optimal allocation between liquid fuels and electricity generation, but questions about the optimal level of bioenergy use require analyses with different assumptions about fixed and free parameters.


Journal of Molecular Graphics & Modelling | 2013

Characterization and comparison of pore landscapes in crystalline porous materials.

Marielle Pinheiro; Richard L. Martin; Chris H. Rycroft; Andrew D. Jones; Enrique Iglesia; Maciej Haranczyk

Crystalline porous materials have many applications, including catalysis and separations. Identifying suitable materials for a given application can be achieved by screening material databases. Such a screening requires automated high-throughput analysis tools that characterize and represent pore landscapes with descriptors, which can be compared using similarity measures in order to select, group and classify materials. Here, we discuss algorithms for the calculation of two types of pore landscape descriptors: pore size distributions and stochastic rays. These descriptors provide histogram representations that encode the geometrical properties of pore landscapes. Their calculation involves the Voronoi decomposition as a technique to map and characterize accessible void space inside porous materials. Moreover, we demonstrate pore landscape comparisons for materials from the International Zeolite Association (IZA) database of zeolite frameworks, and illustrate how the choice of pore descriptor and similarity measure affects the perspective of material similarity exhibiting a particular emphasis and sensitivity to certain aspects of structures.


Environmental Science & Technology | 2011

Application of XPS and solution chemistry analyses to investigate soluble manganese removal by MnO(x)(s)-coated media.

José M. Cerrato; William R. Knocke; Michael F. Hochella; Andrea M. Dietrich; Andrew D. Jones; Thomas F. Cromer

X-ray photoelectron spectroscopy (XPS) was applied to investigate Mn(II) removal by MnO(x)(s)-coated media under experimental conditions similar to the engineered environment of drinking water treatment plants in the absence and presence of chlorine. Macroscopic and spectroscopic results suggest that Mn(II) removal at pH 6.3 and pH 7.2 in the absence of chlorine was mainly due to adsorption onto the MnO(x)(s) surface coating, while removal in the presence of chlorine was due to a combination of initial surface adsorption followed by subsequent surface-catalyzed oxidation. However, Mn(III) was identified by XPS analyses of the Mn 3p photoline for experiments performed in the absence of chlorine at pH 6.3 and pH 7.2, suggesting that surface-catalyzed Mn oxidation also occurred at these conditions. Results obtained at pH 8.2 at 8 and 0.5 mg·L(-1) dissolved oxygen in the absence of chlorine suggest that Mn(II) removal was mainly due to initial adsorption followed by surface-catalyzed oxidation. XPS analyses suggest that Mn(IV) was the predominant species in experiments operated in the presence of chlorine. This study confirms that the use of chlorine combined with the catalytic action of MnO(x)(s) oxides is effective for Mn(II) removal from drinking water filtration systems.


ITF Round Tables | 2007

Energy and Greenhouse Impacts of Biofuels

Daniel M. Kammen; Alexander E. Farrell; Richard J. Plevin; Andrew D. Jones; Mark A. Delucchi; Gregory F. Nemet

In this paper, we review some of the basic energy balance and climate change impact issues associated with biofuels. For both the basic energy and greenhouse gas balances of producing and using a range of fuels, and for the increasingly debated and important issues of non-greenhouse gas impacts, such as land, fertilizer and water use, we conclude that an improved framework for the analysis and evaluation of biofuels is needed. These new methodologies and data sets are needed on both the physical and socioeconomic aspects of the life-cycle of biofuels. We detail some of the components that could be used to build this methodology and highlight key areas for future research. We look at the history and potential impacts of building the resource base for biofuel research, as well as at some of the land-use and socioeconomic impacts of different feedstock-to-fuel pathways.


Science Advances | 2018

The potential of agricultural land management to contribute to lower global surface temperatures

Allegra Mayer; Zeke Hausfather; Andrew D. Jones; Whendee L. Silver

Warming reduction can be achieved globally through improved agricultural land management using existing knowledge and technology. Removal of atmospheric carbon dioxide (CO2) combined with emission reduction is necessary to keep climate warming below the internationally agreed upon 2°C target. Soil organic carbon sequestration through agricultural management has been proposed as a means to lower atmospheric CO2 concentration, but the magnitude needed to meaningfully lower temperature is unknown. We show that sequestration of 0.68 Pg C year−1 for 85 years could lower global temperature by 0.1°C in 2100 when combined with a low emission trajectory [Representative Concentration Pathway (RCP) 2.6]. This value is potentially achievable using existing agricultural management approaches, without decreasing land area for food production. Existing agricultural mitigation approaches could lower global temperature by up to 0.26°C under RCP 2.6 or as much as 25% of remaining warming to 2°C. This declines to 0.14°C under RCP 8.5. Results were sensitive to assumptions regarding the duration of carbon sequestration rates, which is poorly constrained by data. Results provide a framework for the potential role of agricultural soil organic carbon sequestration in climate change mitigation.

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Peter E. Thornton

Oak Ridge National Laboratory

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William D. Collins

Lawrence Berkeley National Laboratory

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Jiafu Mao

Oak Ridge National Laboratory

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Xiaoying Shi

Oak Ridge National Laboratory

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Michael O'Hare

University of California

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Gregory F. Nemet

University of Wisconsin-Madison

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