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Dive into the research topics where Andrew E. Vaughan is active.

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Featured researches published by Andrew E. Vaughan.


Nature | 2015

Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury

Andrew E. Vaughan; Alexis N. Brumwell; Ying Xi; Jeffrey E. Gotts; Doug G. Brownfield; Barbara Treutlein; Kevin Tan; Victor Tan; Feng Chun Liu; Mark R. Looney; Michael A. Matthay; Jason R. Rock; Harold A. Chapman

Broadly, tissue regeneration is achieved in two ways: by proliferation of common differentiated cells and/or by deployment of specialized stem/progenitor cells. Which of these pathways applies is both organ- and injury-specific. Current models in the lung posit that epithelial repair can be attributed to cells expressing mature lineage markers. By contrast, here we define the regenerative role of previously uncharacterized, rare lineage-negative epithelial stem/progenitor (LNEP) cells present within normal distal lung. Quiescent LNEPs activate a ΔNp63 (a p63 splice variant) and cytokeratin 5 remodelling program after influenza or bleomycin injury in mice. Activated cells proliferate and migrate widely to occupy heavily injured areas depleted of mature lineages, at which point they differentiate towards mature epithelium. Lineage tracing revealed scant contribution of pre-existing mature epithelial cells in such repair, whereas orthotopic transplantation of LNEPs, isolated by a definitive surface profile identified through single-cell sequencing, directly demonstrated the proliferative capacity and multipotency of this population. LNEPs require Notch signalling to activate the ΔNp63 and cytokeratin 5 program, and subsequent Notch blockade promotes an alveolar cell fate. Persistent Notch signalling after injury led to parenchymal ‘micro-honeycombing’ (alveolar cysts), indicative of failed regeneration. Lungs from patients with fibrosis show analogous honeycomb cysts with evidence of hyperactive Notch signalling. Our findings indicate that distinct stem/progenitor cell pools repopulate injured tissue depending on the extent of the injury, and the outcomes of regeneration or fibrosis may depend in part on the dynamics of LNEP Notch signalling.


Molecular Therapy | 2010

Expression of human α1-antitrypsin in mice and dogs following AAV6 vector-mediated gene transfer to the lungs

Christine L. Halbert; David K. Madtes; Andrew E. Vaughan; Zejing Wang; Rainer Storb; Stephen J. Tapscott; A. Dusty Miller

We evaluated the potential of lung-directed gene therapy for alpha1-antitrypsin (AAT) deficiency using an adeno-associated virus type 6 (AAV6) vector containing a human AAT (hAAT) complementary DNA (cDNA) delivered to the lungs of mice and dogs. The results in normal and immune-deficient mice showed that hAAT concentrations were much higher in lung fluid than in plasma, and therapeutic levels were obtained even in normal mice. However, in normal mice an immune response against the vector and/or transgene limited long-term gene expression. An AAV6 vector expressing a marker protein verified that AAV6 vectors efficiently transduced lung cells in dogs. Delivery of AAV6-hAAT resulted in low levels of hAAT in dog serum but therapeutic levels in the lung that persisted for at least 58 days to 4 months in three immunosuppressed dogs. Expression in the serum was not detectable after 45 days in one nonimmune suppressed dog. A lymphoproliferative response to AAV capsid but not to hAAT was detected even after immunosuppression. These results in mice and dogs show the feasibility of expression of therapeutic levels of AAT in the lungs after AAV vector delivery, and advocate for approaches to prevent cellular immune responses to AAV capsid proteins for persistence of gene expression in humans.We evaluated the potential of lung-directed gene therapy for α1-antitrypsin (AAT) deficiency using an adeno-associated virus type 6 (AAV6) vector containing a human AAT (hAAT) complementary DNA (cDNA) delivered to the lungs of mice and dogs. The results in normal and immune-deficient mice showed that hAAT concentrations were much higher in lung fluid than in plasma, and therapeutic levels were obtained even in normal mice. However, in normal mice an immune response against the vector and/or transgene limited long-term gene expression. An AAV6 vector expressing a marker protein verified that AAV6 vectors efficiently transduced lung cells in dogs. Delivery of AAV6-hAAT resulted in low levels of hAAT in dog serum but therapeutic levels in the lung that persisted for at least 58 days to 4 months in three immunosuppressed dogs. Expression in the serum was not detectable after 45 days in one nonimmune suppressed dog. A lymphoproliferative response to AAV capsid but not to hAAT was detected even after immunosuppression. These results in mice and dogs show the feasibility of expression of therapeutic levels of AAT in the lungs after AAV vector delivery, and advocate for approaches to prevent cellular immune responses to AAV capsid proteins for persistence of gene expression in humans.


Biochimica et Biophysica Acta | 2013

Regenerative activity of the lung after epithelial injury.

Andrew E. Vaughan; Harold A. Chapman

Lung epithelial cells use remarkably adaptive sensing and signaling systems to maintain a physiological state supporting gas exchange and minimizing environmental insults. One facet of epithelial adaptability is the reversible acquisition of mesenchymal features, a process termed epithelial-mesenchymal transition (EMT). Although in the adult, permanent and complete EMT appears rare or non-existent, a growing body of evidence implicates a critical role for the activation of EMT signaling in tissue remodeling, including fibrotic lung disease. The specific phenotypes of cells undergoing EMT re-programming during epithelial responses to injury continue to be defined and are reviewed here. Several recent studies implicate epithelial expression of canonical EMT transcription factors, such as Snail and Twist1, with the acquisition of a less differentiated, more proliferative stem-like state, providing an additional link between activation of EMT signaling and tissue repair. In lung airways, proliferating variant clara cells rely upon Snail for effective epithelial repair, and in the breast, cells possessing the greatest regenerative capacity also express Snail2. The ongoing elucidation of signaling underlying epithelial stem/progenitor expansion coincides with recent discoveries implicating regenerative activity in the lung, possibly including de novo regeneration of airway and alveolar units. It remains largely unknown what signals drive organization of epithelial progenitor cells that expand after lung injury, to what degree such organization is ever functionally relevant, and whether the lung regenerative potential recently observed in mouse models extends to humans. Yet these unknowns with clinical potential bring future mechanistic studies of EMT and lung repair directly into the field of regenerative medicine. This article is part of a Special Issue entitled: Fibrosis: Translation of basic research to human disease.


Journal of Virology | 2012

Xpr1 Is an Atypical G-Protein-Coupled Receptor That Mediates Xenotropic and Polytropic Murine Retrovirus Neurotoxicity

Andrew E. Vaughan; Ramon Mendoza; R. Aranda; Jean-Luc Battini; A D Miller

ABSTRACT Xenotropic murine leukemia virus-related virus (XMRV) was first identified in human prostate cancer tissue and was later found in a high percentage of humans with chronic fatigue syndrome (CFS). While exploring potential disease mechanisms, we found that XMRV infection induced apoptosis in SY5Y human neuroblastoma cells, suggesting a mechanism for the neuromuscular pathology seen in CFS. Several lines of evidence show that the cell entry receptor for XMRV, Xpr1, mediates this effect, and chemical cross-linking studies show that Xpr1 is associated with the Gβ subunit of the G-protein heterotrimer. The activation of adenylate cyclase rescued the cells from XMRV toxicity, indicating that toxicity resulted from reduced G-protein-mediated cyclic AMP (cAMP) signaling. Some proteins with similarity to Xpr1 are involved in phosphate uptake into cells, but we found no role of Xpr1 in phosphate uptake or its regulation. Our results indicate that Xpr1 is a novel, atypical G-protein-coupled receptor (GPCR) and that xenotropic or polytropic retrovirus binding can disrupt the cAMP-mediated signaling function of Xpr1, leading to the apoptosis of infected cells. We show that this pathway is also responsible for the classic toxicity of the polytropic mink cell focus-forming (MCF) retrovirus in mink cells. Although it now seems clear that the detection of XMRV in humans was the result of sample contamination with a recombinant mouse virus, our findings may have relevance to neurologic disease induced by MCF retroviruses in mice.


Journal of Virology | 2011

The Left Half of the XMRV Retrovirus Is Present in an Endogenous Retrovirus of NIH/3T3 Swiss Mouse Cells

Ramon Mendoza; Andrew E. Vaughan; A D Miller

ABSTRACT Xenotropic murine leukemia virus-related virus (XMRV) is a gammaretrovirus found in association with human prostate cancer and chronic fatigue syndrome, although these associations are controversial. XMRV shows at most 94% identity to known mouse retroviruses. Here we used XMRV-specific PCR to search for a more closely related source of XMRV in mice. While we could not find a complete copy, we did find a 3,600-bp region of XMRV in an endogenous retrovirus present in NIH/3T3 cells. These results show that XMRV has clear ancestors in mice and highlight another possible source of contamination in PCR assays for XMRV.


Journal of Virology | 2011

The left half of XMRV is present in an endogenous retrovirus of NIH/3T3 Swiss mouse cells

Ramon Mendoza; Andrew E. Vaughan; A. Dusty Miller

ABSTRACT Xenotropic murine leukemia virus-related virus (XMRV) is a gammaretrovirus found in association with human prostate cancer and chronic fatigue syndrome, although these associations are controversial. XMRV shows at most 94% identity to known mouse retroviruses. Here we used XMRV-specific PCR to search for a more closely related source of XMRV in mice. While we could not find a complete copy, we did find a 3,600-bp region of XMRV in an endogenous retrovirus present in NIH/3T3 cells. These results show that XMRV has clear ancestors in mice and highlight another possible source of contamination in PCR assays for XMRV.


Molecular Cancer Research | 2011

Lung Cancer in Mice Induced by the Jaagsiekte Sheep Retrovirus Envelope Protein Is Not Maintained by Rare Cancer Stem Cells, but Tumorigenicity Does Correlate with Wnt Pathway Activation

Andrew E. Vaughan; Christine L. Halbert; Sarah K. Wootton; A. Dusty Miller

JSRV, a simple beta-retrovirus, is the etiologic agent of ovine pulmonary adenocarcinoma, a form of non–small cell lung cancer in sheep and goats. It has been shown that the envelope protein alone is sufficient to induce tumorigenesis in the lungs of mice when delivered via an adeno-associated viral vector. Here, we tested the hypothesis that JSRV envelope–induced tumors are maintained by a small population of tumor-initiating cells, termed cancer stem cells. To test this hypothesis, dissociated cancer cells were sorted from envelope-induced tumors in mouse lung based on the putative stem cell markers Sca-1, CD34, and CD133, the pluripotency-associated transcription factor Oct4, and the level of Wnt signaling. No association with increased tumor-initiating capacity was found with any of the cell-surface markers. In addition, we were unable to detect any evidence of Oct4 expression in tumor-bearing mouse lung. However, tumor cells possessing an active Wnt signaling pathway did show a significant correlation with increased tumor formation upon transplantation. Limiting dilution transplant analysis suggests the existence of a large fraction of cells with the ability to propagate tumor growth, with increasing tumor initiation potential correlating with activated Wnt signaling. Mol Cancer Res; 10(1); 86–95. ©2011 AACR.


Retrovirology | 2017

Evidence against a role for jaagsiekte sheep retrovirus in human lung cancer

A. Dusty Miller; Marcelo De las Heras; Jingyou Yu; Fushun Zhang; Shan-Lu Liu; Andrew E. Vaughan; Thomas L. Vaughan; Raul Rosadio; Stefano Rocca; Giuseppe Palmieri; James J. Goedert; Junya Fujimoto; Ignacio I. Wistuba

BackgroundJaagsiekte sheep retrovirus (JSRV) causes a contagious lung cancer in sheep and goats that can be transmitted by aerosols produced by infected animals. Virus entry into cells is initiated by binding of the viral envelope (Env) protein to a specific cell-surface receptor, Hyal2. Unlike almost all other retroviruses, the JSRV Env protein is also a potent oncoprotein and is responsible for lung cancer in animals. Of concern, Hyal2 is a functional receptor for JSRV in humans.ResultsWe show here that JSRV is fully capable of infecting human cells, as measured by its reverse transcription and persistence in the DNA of cultured human cells. Several studies have indicated a role for JSRV in human lung cancer while other studies dispute these results. To further investigate the role of JSRV in human lung cancer, we used highly-specific mouse monoclonal antibodies and a rabbit polyclonal antiserum against JSRV Env to test for JSRV expression in human lung cancer. JSRV Env expression was undetectable in lung cancers from 128 human subjects, including 73 cases of bronchioalveolar carcinoma (BAC; currently reclassified as lung invasive adenocarcinoma with a predominant lepidic component), a lung cancer with histology similar to that found in JSRV-infected sheep. The BAC samples included 8 JSRV DNA-positive samples from subjects residing in Sardinia, Italy, where sheep farming is prevalent and JSRV is present. We also tested for neutralizing antibodies in sera from 138 Peruvians living in an area where sheep farming is prevalent and JSRV is present, 24 of whom were directly exposed to sheep, and found none.ConclusionsWe conclude that while JSRV can infect human cells, JSRV plays little if any role in human lung cancer.


Retrovirology | 2011

Mechanism for XMRV neurotoxicity

Andrew E. Vaughan; Ramon Mendoza; Ramona Aranda; Jean-Luc Battini; A. Dusty Miller

Xenotropic murine leukemia virus-related virus (XMRV) has been found in a high percentage of humans with chronic fatigue syndrome (CFS). However, more recent studies have failed to confirm these results, and it now appears likely that the original findings were due to patient sample contamination. Because it initially appeared that XMRV was involved in CFS, we explored potential mechanisms of XMRV neurotoxicity that might underliethe neuromuscular pathology seen in CFS. Indeed, we found that XMRV infection induced apoptosis in SY5Y human neuroblastoma cells. We hypothesized that signaling through the cell-entry receptor for XMRV, the xenotropic and polytropic retrovirus receptor (Xpr1), mediated this toxicity. In support of this hypothesis, SY5Y cells expressing mouse Xpr1, which unlike human Xpr1 does not bind or promote entry of xenotropic retroviruses, were resistant to XMRV toxicity, even though XMRV could still infect these cells. Similarly, SY5Y cells expressing several XMRV binding-defective deletion mutants of human Xpr1 were resistant to XMRV toxicity. These results indicate that Xpr1 mediates the toxicity of XMRV. Xpr1 is related the yeast Syg1 protein, which associates with the β subunit of the yeast G-protein. We found that human Xpr1 is also associated with the human Gβ subunit, and that over expression of mouse or human Xpr1 increased intracellular cAMP, a typical output of stimulatory G-protein signaling. Moreover, increasing the cAMP level in SY5Y cells by direct activation of adenylate cyclase protected the SY5Y cells from the toxic effects of XMRV and polytropic retrovirus infection. These results indicate that Xpr1 is a G-protein-coupled receptor (GPCR), and that xenotropic or polytropic retrovirus binding can disrupt the cAMP-mediated signaling function of Xpr1 leading to apoptosis of infected cells. In addition, we found that this pathway is responsible for the toxicity of the polytropic mink cell focus-forming (MCF) retrovirus in mink cells, the basis for the classic MCF focus assay.Xpr1 orthologs are widely distributed in animals, plants and unicellular organisms, but these proteins show no sequence similarity to known GPCRs. Some proteins with similarity to Xpr1 are involved in phosphate uptake into cells, but we found no role of Xpr1 in phosphate uptake or its regulation. Lastly, some polytropic retroviruses induce neurologic disease in mice, and we propose that alterations of Xpr1-mediated G-protein signalinglikely are responsible. However, because of recent results indicting that XMRV is not a human retrovirus, a role for XMRV in human disease is unlikely.


Nature Cell Biology | 2017

Local lung hypoxia determines epithelial fate decisions during alveolar regeneration

Ying Xi; Thomas J. Kim; Alexis N. Brumwell; Ian H. Driver; Ying Wei; Victor Tan; Julia R. Jackson; Jianming Xu; Dong-Kee Lee; Jeffrey E. Gotts; Michael A. Matthay; John M. Shannon; Harold A. Chapman; Andrew E. Vaughan

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A. Dusty Miller

Fred Hutchinson Cancer Research Center

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Ramon Mendoza

Fred Hutchinson Cancer Research Center

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Ying Xi

University of California

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A D Miller

Fred Hutchinson Cancer Research Center

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Christine L. Halbert

Fred Hutchinson Cancer Research Center

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Ian H. Driver

University of California

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Jason R. Rock

University of California

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