Andrew F. Laine

Texture classification by wavelet packet signatures

This correspondence introduces a new approach to characterize textures at multiple scales. The performance of wavelet packet spaces are measured in terms of sensitivity and selectivity for the classification of twenty-five natural textures. Both energy and entropy metrics were computed for each wavelet packet and incorporated into distinct scale space representations, where each wavelet packet (channel) reflected a specific scale and orientation sensitivity. Wavelet packet representations for twenty-five natural textures were classified without error by a simple two-layer network classifier. An analyzing function of large regularity (D/sub 20/) was shown to be slightly more efficient in representation and discrimination than a similar function with fewer vanishing moments (D/sub 6/) In addition, energy representations computed from the standard wavelet decomposition alone (17 features) provided classification without error for the twenty-five textures included in our study. The reliability exhibited by texture signatures based on wavelet packets analysis suggest that the multiresolution properties of such transforms are beneficial for accomplishing segmentation, classification and subtle discrimination of texture. >

Speckle reduction and contrast enhancement of echocardiograms via multiscale nonlinear processing

This paper presents an algorithm for speckle reduction and contrast enhancement of echocardiographic images. Within a framework of multiscale wavelet analysis, the authors apply wavelet shrinkage techniques to eliminate noise while preserving the sharpness of salient features. In addition, nonlinear processing of feature energy is carried out to enhance contrast within local structures and along object boundaries. The authors show that the algorithm is capable of not only reducing speckle, but also enhancing features of diagnostic importance, such as myocardial walls in two-dimensional echocardiograms obtained from the parasternal short-axis view. Shrinkage of wavelet coefficients via soft thresholding within finer levels of scale is carried out on coefficients of logarithmically transformed echocardiograms. Enhancement of echocardiographic features is accomplished via nonlinear stretching followed by hard thresholding of wavelet coefficients within selected (midrange) spatial-frequency levels of analysis. The authors formulate the denoising and enhancement problem, introduce a class of dyadic wavelets, and describe their implementation of a dyadic wavelet transform. Their approach for speckle reduction and contrast enhancement was shown to be less affected by pseudo-Gibbs phenomena. The authors show experimentally that this technique produced superior results both qualitatively and quantitatively when compared to results obtained from existing denoising methods alone. A study using a database of clinical echocardiographic images suggests that such denoising and enhancement may improve the overall consistency of expert observers to manually defined borders.

Circle recognition through a 2D Hough Transform and radius histogramming

We present a two-step algorithm for the recognition of circles. The first step uses a 2D Hough Transform for the detection of the centres of the circles and the second step validates their existence by radius histogramming. The 2D Hough Transform technique makes use of the property that every chord of a circle passes through its centre. We present results of experiments with synthetic data demonstrating that our method is more robust to noise than standard gradient based methods. The promise of the method is demonstrated with its application on a natural image and on a digitized mammogram.

Wavelet descriptors for multiresolution recognition of handprinted characters

We present a novel set of shape descriptors that represents a digitized pattern in a concise way and that is particularly well-suited for the recognition of handprinted characters. The descriptor set is derived from the wavelet transform of a patterns contour. The approach is closely related to feature extraction methods by Fourier series expansion. The motivation to use an orthonormal wavelet basis rather than the Fourier basis is that wavelet coefficients provide localized frequency information, and that wavelets allow us to decompose a function into a multiresolution hierarchy of localized frequency bands. We describe a character recognition system that relies upon wavelet descriptors to simultaneously analyze character shape at multiple levels of resolution. The system was trained and tested on a large database of more than 6000 samples of handprinted alphanumeric characters. The results show that wavelet descriptors are an efficient representation that can provide for reliable recognition in problems with large input variability.

Anatomical Brain Images Alone Can Accurately Diagnose Chronic Neuropsychiatric Illnesses

Objective Diagnoses using imaging-based measures alone offer the hope of improving the accuracy of clinical diagnosis, thereby reducing the costs associated with incorrect treatments. Previous attempts to use brain imaging for diagnosis, however, have had only limited success in diagnosing patients who are independent of the samples used to derive the diagnostic algorithms. We aimed to develop a classification algorithm that can accurately diagnose chronic, well-characterized neuropsychiatric illness in single individuals, given the availability of sufficiently precise delineations of brain regions across several neural systems in anatomical MR images of the brain. Methods We have developed an automated method to diagnose individuals as having one of various neuropsychiatric illnesses using only anatomical MRI scans. The method employs a semi-supervised learning algorithm that discovers natural groupings of brains based on the spatial patterns of variation in the morphology of the cerebral cortex and other brain regions. We used split-half and leave-one-out cross-validation analyses in large MRI datasets to assess the reproducibility and diagnostic accuracy of those groupings. Results In MRI datasets from persons with Attention-Deficit/Hyperactivity Disorder, Schizophrenia, Tourette Syndrome, Bipolar Disorder, or persons at high or low familial risk for Major Depressive Disorder, our method discriminated with high specificity and nearly perfect sensitivity the brains of persons who had one specific neuropsychiatric disorder from the brains of healthy participants and the brains of persons who had a different neuropsychiatric disorder. Conclusions Although the classification algorithm presupposes the availability of precisely delineated brain regions, our findings suggest that patterns of morphological variation across brain surfaces, extracted from MRI scans alone, can successfully diagnose the presence of chronic neuropsychiatric disorders. Extensions of these methods are likely to provide biomarkers that will aid in identifying biological subtypes of those disorders, predicting disease course, and individualizing treatments for a wide range of neuropsychiatric illnesses.

A review of imaging techniques for systems biology

This paper presents a review of imaging techniques and of their utility in system biology. During the last decade systems biology has matured into a distinct field and imaging has been increasingly used to enable the interplay of experimental and theoretical biology. In this review, we describe and compare the roles of microscopy, ultrasound, CT (Computed Tomography), MRI (Magnetic Resonance Imaging), PET (Positron Emission Tomography), and molecular probes such as quantum dots and nanoshells in systems biology. As a unified application area among these different imaging techniques, examples in cancer targeting are highlighted.

LV volume quantification via spatiotemporal analysis of real-time 3-D echocardiography

This paper presents a method of four-dimensional (4-D) (3-D+Time) space-frequency analysis for directional denoising and enhancement of real-time three-dimensional (RT3D) ultrasound and quantitative measures in diagnostic cardiac ultrasound. Expansion of echocardiographic volumes is performed with complex exponential wavelet-like basis functions called brushlets. These functions offer good localization in time and frequency and decompose a signal into distinct patterns of oriented harmonics, which are invariant to intensity and contrast range. Deformable-model segmentation is carried out on denoised data after thresholding of transform coefficients. This process attenuates speckle noise while preserving cardiac structure location. The superiority of 4-D over 3-D analysis for decorrelating additive white noise and multiplicative speckle noise on a 4-D phantom volume expanding in time is demonstrated. Quantitative validation, computed for contours and volumes, is performed on in vitro balloon phantoms. Clinical applications of this spatiotemporal analysis tool are reported for six patient cases providing measures of left ventricular volumes and ejection fraction.

Optimal k-Space Sampling for Dynamic Contrast-Enhanced MRI with an Application to MR Renography

For time‐resolved acquisitions with k‐space undersampling, a simulation method was developed for selecting imaging parameters based on minimization of errors in signal intensity versus time and physiologic parameters derived from tracer kinetic analysis. Optimization was performed for time‐resolved angiography with stochastic trajectories (TWIST) algorithm applied to contrast‐enhanced MR renography. A realistic 4D phantom comprised of aorta and two kidneys, one healthy and one diseased, was created with ideal tissue time‐enhancement pattern generated using a three‐compartment model with fixed parameters, including glomerular filtration rate (GFR) and renal plasma flow (RPF). TWIST acquisitions with different combinations of sampled central and peripheral k‐space portions were applied to this phantom. Acquisition performance was assessed by the difference between simulated signal intensity (SI) and calculated GFR and RPF and their ideal values. Sampling of the 20% of the center and 1/5 of the periphery of k‐space in phase‐encoding plane and data‐sharing of the remaining 4/5 minimized the errors in SI (<5%), RPF, and GFR (both <10% for both healthy and diseased kidneys). High‐quality dynamic human images were acquired with optimal TWIST parameters and 2.4 sec temporal resolution. The proposed method can be generalized to other dynamic contrast‐enhanced MRI applications, e.g., MR angiography or cancer imaging. Magn Reson Med, 2009.

A Partial Intensity Invariant Feature Descriptor for Multimodal Retinal Image Registration

Detection of vascular bifurcations is a challenging task in multimodal retinal image registration. Existing algorithms based on bifurcations usually fail in correctly aligning poor quality retinal image pairs. To solve this problem, we propose a novel highly distinctive local feature descriptor named partial intensity invariant feature descriptor (PIIFD) and describe a robust automatic retinal image registration framework named Harris-PIIFD. PIIFD is invariant to image rotation, partially invariant to image intensity, affine transformation, and viewpoint/perspective change. Our Harris-PIIFD framework consists of four steps. First, corner points are used as control point candidates instead of bifurcations since corner points are sufficient and uniformly distributed across the image domain. Second, PIIFDs are extracted for all corner points, and a bilateral matching technique is applied to identify corresponding PIIFDs matches between image pairs. Third, incorrect matches are removed and inaccurate matches are refined. Finally, an adaptive transformation is used to register the image pairs. PIIFD is so distinctive that it can be correctly identified even in nonvascular areas. When tested on 168 pairs of multimodal retinal images, the Harris-PIIFD far outperforms existing algorithms in terms of robustness, accuracy, and computational efficiency.

Contrast enhancement by multi-scale adaptive histogram equalization

An approach for contrast enhancement utilizing multi-scale analysis is introduced. Sub-band coefficients were modified by the method of adaptive histogram equalization. To achieve optimal contrast enhancement, the sizes of sub-regions were chosen with consideration to the support of the analysis filters. The enhanced images provided subtle details of tissues that are only visible with tedious contrast/brightness windowing methods currently used in clinical reading. We present results on chest CT data, which shows significant improvement over existing state-of-the-art methods: unsharp masking, adaptive histogram equalization (AHE), and the contrast limited adaptive histogram equalization (CLAHE). A systematic study on 109 clinical chest CT images by three radiologists suggests the promise of this method in terms of both interpretation time and diagnostic performance on different pathological cases. In addition, radiologists observed no noticeable artifacts or amplification of noise that usually appears in traditional adaptive histogram equalization and its variations.