Andrew J. Keefe

Poly(zwitterionic)protein conjugates offer increased stability without sacrificing binding affinity or bioactivity

Treatment with therapeutic proteins is an attractive approach to targeting a number of challenging diseases. Unfortunately, the native proteins themselves are often unstable in physiological conditions, reducing bioavailability and therefore increasing the dose that is required. Conjugation with poly(ethylene glycol) (PEG) is often used to increase stability, but this has a detrimental effect on bioactivity. Here, we introduce conjugation with zwitterionic polymers such as poly(carboxybetaine). We show that poly(carboxybetaine) conjugation improves stability in a manner similar to PEGylation, but that the new conjugates retain or even improve the binding affinity as a result of enhanced protein-substrate hydrophobic interactions. This chemistry opens a new avenue for the development of protein therapeutics by avoiding the need to compromise between stability and affinity.

Sequence, Structure, and Function of Peptide Self-assembled Monolayers

Cysteine is commonly used to attach peptides onto gold surfaces. Here we show that the inclusion of an additional linker with a length of four residues (-PPPPC) and a rigid, hydrophobic nature is a better choice for forming peptide self-assembled monolayers (SAMs) with a well-ordered structure and high surface density. We compared the structure and function of the nonfouling peptide EKEKEKE-PPPPC-Am with EKEKEKE-C-Am. Circular dichroism, attenuated total internal reflection Fourier transform IR spectroscopy, and molecular dynamics results showed that EKEKEKE-PPPPC-Am forms a secondary structure while EKEKEKE-C-Am has a random structure. Surface plasmon resonance sensor results showed that protein adsorption on EKEKEKE-PPPPC-Am/gold is very low with small variation while protein adsorption on EKEKEKE-C-Am/gold is high with large variation. X-ray photoelectron spectroscopy results showed that both peptides have strong gold-thiol binding with the gold surface, indicating that their difference in protein adsorption is due to their assembled structures. Further experimental and simulation studies were performed to show that -PPPPC is a better linker than -PC, -PPC, and -PPPC. Finally, we extended EKEKEKE-PPPPC-Am with the cell-binding sequence RGD and demonstrated control over specific versus nonspecific cell adhesion without using poly(ethylene glycol). Adding a functional peptide to the nonfouling EK sequence avoids complex chemistries that are used for its connection to synthetic materials.

Multifunctional and degradable zwitterionic nanogels for targeted delivery, enhanced MR imaging, reduction-sensitive drug release, and renal clearance

Multifunctional and degradable nanogels encapsulating both model drug (fluorescently labeled dextran) and imaging reagent (monodisperse Fe(3)O(4) nanoparticles) were developed by polymerizing zwitterionic monomers with a disulfide crosslinker. Results show that the nanogels have a hydrodynamic size of about 110 nm in saline solution and their size remained unchanged for over 6 months. After being conjugated with a targeting ligand, the nanogels showed a significant cellular uptake by human umbilical vein endothelial cells (HUVEC). The nanogels show low macrophage uptake, implying potential low interaction with the innate immune system. Upon entering the reducing intracellular environment, the disulfide bonds were efficiently cleaved, resulting in the spontaneous release of the encapsulated model drug and Fe(3)O(4) nanoparticles. Magnetic resonance imaging (MRI) studies show that the encapsulation of multiple monodisperse Fe(3)O(4) nanoparticles by the nanogels significantly enhanced their MRI performance (R2 relaxivity), while the disassembling of the Fe(3)O(4) nanoparticles due to the nanogels degradation brings their R2 relaxivity back to that of their original monodisperse form. Furthermore, the degradation properties enable the removal of the disassembled nanogels from the body by renal clearance.

Cellulose Paper Sensors Modified with Zwitterionic Poly(carboxybetaine) for Sensing and Detection in Complex Media

Poly(carboxybetaine) (PCB) functionalized cellulose paper was used as a paper-based microfluidic device. The results showed that the PCB modified paper sensor was able to achieve (a) more rapid and sensitive glucose detection from undiluted human serum compared to bare cellulose and (b) specific antigen detection via covalently immobilized antibodies.

Biologically Inspired Stealth Peptide-Capped Gold Nanoparticles

Introduction into the human body makes most nanoparticle systems susceptible to aggregation via nonspecific protein binding. Here, we developed a peptide-capped gold nanoparticle platform that withstands aggregation in undiluted human serum at 37 °C for 24 h. This biocompatible and natural system is based on mimicking human proteins which are enriched in negatively charged glutamic acid and positively charged lysine residues on their surface. The multifunctional EKEKEKE-PPPPC-Am peptide sequence consists of a stealth glutamic acid/lysine portion combined with a surface anchoring linker containing four prolines and a cysteine. Particle stability was measured via optical spectroscopy and dynamic light scattering in single protein, high salt, and undiluted human serum solutions. In vitro cell experiments demonstrate EKEKEKE-PPPPC-Am capped gold nanoparticles effectively minimize nonspecific cell uptake by nonphagocytic bovine aortic endothelial cells and phagocytic murine macrophage RAW 264.7 cells. Cytotoxicity studies show that peptide-capped gold nanoparticles do not affect cell viability. Finally, the peptide EKEKEKE-PPPPC-Am was extended with cyclic RGD to demonstrate specific cell targeting and stealth without using poly(ethylene glycol). Adding the functional peptide via peptide sequence extension avoids complex conjugation chemistries that are used for connection to synthetic materials. Inductively coupled plasma mass spectroscopy results indicate high aortic bovine endothelial cell uptake of c[RGDfE(SGG-KEKEKE-PPPPC-Am)] capped gold nanoparticles and low uptake of the control scrambled sequence c[RDGfE(SGG-KEKEKE-PPPPC-Am)] capped gold nanoparticles.

The effect of lightly crosslinked poly(carboxybetaine) hydrogel coating on the performance of sensors in whole blood

Surface coatings of high packing densities have been routinely used to prevent nonspecific biomolecular and microorganism attachment. Hydrogels are another class of low fouling materials used to create three-dimensional matrixes for the free diffusion of small analytes or drugs and the high-loading of bio-recognition elements. However, biomolecules are subject to being entrapped within hydrogel matrixes or adhered onto hydrogel surfaces, making them questionable for use in whole blood. Here, we demonstrate the feasibility of a lightly crosslinked poly(carboxybetaine) hydrogel for use in whole blood, as opposite to the conventional wisdom of high packing density in surface coatings. Proteins are able to diffuse in and out of the matrix freely without being altered from their native conformations. In order to demonstrate its long-term performance in whole blood, this hydrogel was used as the surface coating of a glucose sensor. This work paves a new way for the development of surface coatings and sensors to achieve long-term stability and high performance in whole blood.

Decoding nonspecific interactions from nature

The interactions which govern chemical processes may be broadly categorized into specific interactions, high activity for a certain target molecule, and nonspecific interactions, low activity for all targets. Despite their ubiquity in biology and chemistry, nonspecific interactions are generally overlooked and a fundamental understanding of nonspecific interactions is lacking. Molecular chaperones are large protein complexes which have evolved to resist nonspecific interactions. Their interior surface resists binding to thousands of types of misfolded proteins. Proteins found in the cytoplasm, a crowded environment with many spurious binding targets, are another example. These proteins have evolved high selectivity and stability despite nonspecific interactions. Using structural bioinformatics, we have studied the interiors of molecular chaperones from five species and examined the surface chemistry of 1162 proteins, categorized by if they are present in the cytoplasm or extracellular space. A better understanding of how nature resists nonspecific interactions is key for the chemistry of materials, surfaces, and particles which must remain stable in complex environments. The abundance of amino acids, their interactions, their hydration, and sequence patterns were compared in these two systems, molecular chaperones and proteins surfaces. Striking similarities were found and trends were identified as the system environments became harsher. Peptide based mimics were synthesized to test the conclusions. This, in turn, has led to the design of new stealth compounds and a deeper understanding of nonspecific interactions.

Simple and robust approach for passivating and functionalizing surfaces for use in complex media.

Pluronic is a popular triblock copolymer used as a surfactant to introduce hydrophilic coatings onto many different types of material surfaces, from engineering to biomedical applications. Unfortunately, this is limited in its ability to resist fouling from complex media (i.e., blood) and leaves the surface hard for further modification. Herein, we report a simple, yet robust approach for passivating and functionalizing surfaces based on zwitterionic poly(carboxybetaine) (PCB) based triblock copolymer, which can be directly applied to surfaces to prevent nonspecific protein adsorption from undiluted blood plasma, and to provide additional functionalities needed for the attachment of biomolecules. Several hydrophobic surfaces including polydimethylsiloxane, silanized silica, and self-assembled monolayers are tested to demonstrate its applicability to a wide range of systems. This approach provides a robust, convenient, and effective surface modification method for real-world applications from simple surface passivation to specific targeting in complex media.

Free energy of solvated salt bridges: a simulation and experimental study.

Charged amino acids are the most common on surfaces of proteins and understanding the interactions between these charged amino acids, salt bridging, is crucial for understanding protein-protein interactions. Previous simulations have been limited to implicit solvent or fixed binding geometry due to the sampling required for converged free energies. Using well-tempered metadynamics, we have calculated salt bridge free energy surfaces in water and confirmed the results with NMR experiments. The simulations give binding free energies, quantitative ranking of salt bridging strength, and insights into the hydration of the salt bridges. The arginine-aspartate salt bridge was found to be the weakest and arginine-glutamate the strongest, showing that arginine can discriminate between aspartate and glutamate, whereas the salt bridges with lysine are indistinguishable in their free energy. The salt bridging hydration is found to be complementary to salt bridge orientation with arginine having specific orientations.

Screening Nonspecific Interactions of Peptides without Background Interference

The need to discover new peptide sequences to perform particular tasks has lead to a variety of peptide screening methods: phage display, yeast display, bacterial display and resin display. These are effective screening methods because the role of background binding is often insignificant. In the field of nonfouling materials, however, a premium is placed on chemistries that have extremely low levels of nonspecific binding. Due to the presence of background binding, it is not possible to use traditional peptide screening methods to select for nonfouling chemistries. Here, we developed a peptide screening method, as compared to traditional methods, that can successfully evaluate the effectiveness of nonfouling peptide sequences. We have tested the effect of different peptide lengths and chemistries on the adsorption of protein. The order of residues within a single sequence was also adjusted to determine the effect of charge segregation on protein adsorption.