Andrew W. Trites

Behavioural responses of killer whales ( Orcinus orca ) to whale-watching boats: opportunistic observations and experimental approaches

Johnstone Strait provides important summer habitat for the northern resident killer whales Orcinus orca of British Columbia. The site is also an active whale-watching area. A voluntary code of conduct requests that boats do not approach whales closer than 100 m to address perceived, rather than demonstrated, effects of boat traffic on killer whales. The purpose of the study was to test the relevance of this distance guideline. Relationships between boat traffic and whale behaviour were studied in 1995 and 1996 by shore-based theodolite tracking of 25 identifiable focal animals from the population of 209 whales. Individual killer whales were repeatedly tracked in the absence of boats and during approaches by a 5.2 m motorboat that paralleled each whale at 100 m. In addition, whales were tracked opportunistically, when no effort was made to manipulate boat traffic. Dive times, swim speeds, and surface-active behaviours such as breaching and spy-hopping were recorded. On average, male killer whales swam significantly faster than females. Whales responded to experimental approaches by adopting a less predictable path than observed during the preceding, no-boat period, although males and females used subtly different avoidance tactics. Females responded by swimming faster and increasing the angle between successive dives, whereas males maintained their speed and chose a smooth, but less direct, path. Canonical correlations between whale behaviour and vessel proximity are consistent with these conclusions, which suggest that weakening whale-watching guidelines, or not enforcing them, would result in higher levels of disturbance. High variability in whale behaviour underscores the importance of large sample size and extensive experimentation when assessing the impacts of human activity on killer whales.

Molecular scatology as a tool to study diet: analysis of prey DNA in scats from captive Steller sea lions.

The DNA of prey present in animal scats may provide a valuable source of information for dietary studies. We conducted a captive feeding trial to test whether prey DNA could be reliably detected in scat samples from Steller sea lions (Eumetopias jubatus). Two sea lions were fed a diet of fish (five species) and squid (one species), and DNA was extracted from the soft component of collected scats. Most of the DNA obtained came from the predator, but prey DNA could be amplified using prey‐specific primers. The four prey species fed in consistent daily proportions throughout the trial were detected in more than 90% of the scat DNA extractions. Squid and sockeye salmon, which were fed as a relatively small percentage of the daily diet, were detected as reliably as the more abundant diet items. Prey detection was erratic in scats collected when the daily diet was fed in two meals that differed in prey composition, suggesting that prey DNA is passed in meal specific pulses. Prey items that were removed from the diet following one day of feeding were only detected in scats collected within 48 h of ingestion. Proportions of fish DNA present in eight scat samples (evaluated through the screening of clone libraries) were roughly proportional to the mass of prey items consumed, raising the possibility that DNA quantification methods could provide semi‐quantitative diet composition data. This study should be of broad interest to researchers studying diet since it highlights an approach that can accurately identify prey species and is not dependent on prey hard parts surviving digestion.

Dietary analysis from fecal samples : How many scats are enough?

Abstract Diets of mammals are increasingly being inferred from identification of hard parts from prey eaten and recovered in fecal remains (scats). Frequencies with which particular prey species occur among collections of scats are easily compiled to describe the average diet, and can be used to compare diets between and within geographic regions, and across years and seasons. Important to these analyses is the question of statistical power. In other words, how many scats should be collected to compare the diet among and between species? We addressed this problem by using Monte Carlo simulations and frequency of occurrence methods to analytically determine the consequence of sample size on the dietary analysis of scats. We considered 2 questions. First, how is the statistical power affected by sample size? Second, what is the likelihood of not identifying a prey species? We randomly sampled predetermined numbers of scats (n = 10–200) from computer-generated populations of scats containing prey of known species and frequencies of occurrences. We also randomly sampled a large database of field-collected scats from Steller sea lions (Eumetopias jubatus). We then used standard contingency table tests such as chi-square and Fishers exact test to determine whether differences between our samples and populations were statistically significant. We found that a minimum size of 59 scats is necessary to identify principal prey remains occurring in >5% of scats. However, 94 samples are required when comparing diets to distinguish moderate effect sizes over time or between areas. These findings have significant implications for the interpretation of published dietary data, as well as for the design of future scat-based dietary studies for pinnipeds and other species.

Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

A goal of many environmental DNA barcoding studies is to infer quantitative information about relative abundances of different taxa based on sequence read proportions generated by high‐throughput sequencing. However, potential biases associated with this approach are only beginning to be examined. We sequenced DNA amplified from faeces (scats) of captive harbour seals (Phoca vitulina) to investigate whether sequence counts could be used to quantify the seals’ diet. Seals were fed fish in fixed proportions, a chordate‐specific mitochondrial 16S marker was amplified from scat DNA and amplicons sequenced using an Ion Torrent PGM™. For a given set of bioinformatic parameters, there was generally low variability between scat samples in proportions of prey species sequences recovered. However, proportions varied substantially depending on sequencing direction, level of quality filtering (due to differences in sequence quality between species) and minimum read length considered. Short primer tags used to identify individual samples also influenced species proportions. In addition, there were complex interactions between factors; for example, the effect of quality filtering was influenced by the primer tag and sequencing direction. Resequencing of a subset of samples revealed some, but not all, biases were consistent between runs. Less stringent data filtering (based on quality scores or read length) generally produced more consistent proportional data, but overall proportions of sequences were very different than dietary mass proportions, indicating additional technical or biological biases are present. Our findings highlight that quantitative interpretations of sequence proportions generated via high‐throughput sequencing will require careful experimental design and thoughtful data analysis.

The effects of prey availability on pup mortality and the timing of birth of South American sea lions (Otaria flavescens) in Peru

Pup mortality and the timing of birth of South American sea lions Otaria flavescens were investigated to determine the possible relationship between fluctuations in prey availability in the Peruvian upwelling ecosystem and current and future reproductive success of sea lions during six consecutive breeding seasons. Our study from 1997 to 2002 encompassed the strongest El Nino on record and one La Nina event. Pup mortality ranged from 13% before El Nino to 100% during El Nino, and was negatively correlated with prey availability. Abortions were also more frequent when prey availability was low. However, pup mortality remained high following El Nino due to the punctuated short-term effects it had on population dynamics and subsequent maternal behaviour. Births occurred later in the season after years of low food availability and earlier following years of high food availability. The peak of pupping occurred around the peak of mortality in all years, and may have been the product of intensive competition between bulls at the peak of the breeding season. The stronger and more frequent El Ninos that appear to be occurring along the Peruvian coast may produce significant stochastic changes in future births and pup mortality, which may place the vulnerable South American sea lion population in Peru at greater risk.

Heat increment of feeding in Steller sea lions, Eumetopias jubatus.

The heat increment of feeding (HIF) was measured in six captive, juvenile Steller sea lions (Eumetopias jubatus), fed meals of either 2 or 4 kg of herring. HIF was calculated as the post-prandial increase in metabolism above baseline levels, and was measured using open-circuit (gas) respirometry. It averaged 12.4 +/- 0.9% (SE) of ingested energy intake for the 4-kg meal trials, and 9.9 +/- 0.9% for the 2-kg meal size. The effect lasted 8-10 hr for the larger meal size. Metabolism peaked 3.7 hr after feeding, and was 2.13 times higher than baseline levels. For the 2-kg meal size, the effect lasted 6-8 hr, with metabolism peaking 2.8 hr after ingestion at 1.76 times baseline levels. Our estimates of HIF for Steller sea lions are at the lower end of estimates for terrestrial mammals, and are consistent with estimates for other marine mammals.

Prey Patch Patterns Predict Habitat Use by Top Marine Predators with Diverse Foraging Strategies

Spatial coherence between predators and prey has rarely been observed in pelagic marine ecosystems. We used measures of the environment, prey abundance, prey quality, and prey distribution to explain the observed distributions of three co-occurring predator species breeding on islands in the southeastern Bering Sea: black-legged kittiwakes (Rissa tridactyla), thick-billed murres (Uria lomvia), and northern fur seals (Callorhinus ursinus). Predictions of statistical models were tested using movement patterns obtained from satellite-tracked individual animals. With the most commonly used measures to quantify prey distributions - areal biomass, density, and numerical abundance - we were unable to find a spatial relationship between predators and their prey. We instead found that habitat use by all three predators was predicted most strongly by prey patch characteristics such as depth and local density within spatial aggregations. Additional prey patch characteristics and physical habitat also contributed significantly to characterizing predator patterns. Our results indicate that the small-scale prey patch characteristics are critical to how predators perceive the quality of their food supply and the mechanisms they use to exploit it, regardless of time of day, sampling year, or source colony. The three focal predator species had different constraints and employed different foraging strategies – a shallow diver that makes trips of moderate distance (kittiwakes), a deep diver that makes trip of short distances (murres), and a deep diver that makes extensive trips (fur seals). However, all three were similarly linked by patchiness of prey rather than by the distribution of overall biomass. This supports the hypothesis that patchiness may be critical for understanding predator-prey relationships in pelagic marine systems more generally.

GROWTH IN BODY SIZE OF THE STELLER SEA LION (EUMETOPIAS JUBATUS)

Abstract Growth models (mass and length) were constructed for male (≥1 year old), female (≥1 year old), and pregnant female Steller sea lions (Eumetopias jubatus) shot on rookeries or haulouts, or in coastal waters of southeastern Alaska, the Gulf of Alaska, or the Bering Sea ice edge between 1976 and 1989. The Richards model best described growth in body length and mass. Females with fetuses were 3 cm longer and 28 kg heavier on average than females of the same age without fetuses. Males grew in length over a longer period than did females and exhibited a growth spurt in mass that coincided with sexual maturity between 5 and 7 years of age. Average predicted standard lengths of males and females ≥12 years of age were 3.04 and 2.32 m, respectively, and average predicted masses were 681 and 273 kg, respectively. Maximum recorded mass was 910 kg for an adult male. Males achieved 90% of their asymptotic length and mass by 8 and 9 years of age, respectively, compared with 4 and 13 years, respectively, for females. Residuals of the size-at-age models indicated seasonal changes in growth rates. Young animals (<6 years old) and adult males grew little during the breeding season (May–July), and adult males did not resume growth until sometime after November.

Prey capture attempts can be detected in Steller sea lions and other marine predators using accelerometers

We attached accelerometers to the head and jaw of a Steller sea lion (Eumetopias jubatus) to determine whether feeding attempts in a controlled setting could be quantified by acceleration features characteristic of head and jaw movements. Most of the 19 experimental feeding events that occurred during the 51 dives recorded resulted in specific acceleration patterns that were clearly distinguishable from swimming accelerations. The differential acceleration between the head-mounted and jaw-mounted accelerometers detected 84% of prey captures on the vertical axis and 89% on the horizontal axis. However, the jaw-mounted accelerometer alone proved to be equally effective at detecting prey capture attempts. Acceleration along the horizontal (surge)-axis appeared to be particularly efficient in detecting prey captures, and suggests that a single accelerometer placed under the jaw of a pinniped is a promising and easily implemented means of recording prey capture attempts.

Attendance patterns of Steller sea lions (Eumetopias jubatus) and their young during winter

Winter attendance patterns of lactating Steller sea lions Eumetopias jubatus and their offspring were recorded during the late stages of nursing when the young were expected to move from milk to independent foraging. Trip duration and nursing visits to shore by 24 mothers with pups (7‐9 months old) and six mothers with yearlings (19‐21 months old) were noted during 600 h of observations (from 22 January to 1 April 1996) at a non-breeding haulout site in south-eastern Alaska. Pups and yearlings tended to stay on or near the haulout while their mothers were away and showed no signs of weaning during winter. Their average trips to sea were 43% shorter in duration than those of lactating females, suggesting that pups and yearlings make independent trips away from the haulout while their mothers forage. The winter attendance cycle of lactating females (consisting of one trip to sea and one visit on land) averaged about 3 days, with the mothers of pups spending an average of 15 h of this time onshore with their offspring. The winter attendance cycle of pups and yearlings averaged just over 2 days, with the immature sea lions spending an average of 22 h on shore. Foraging trips by mothers of yearlings were significantly longer than those by mothers of pups. However, there was no significant difference in the foraging times of mothers of male and female pups. Lactating females spent more time at sea during winter than during summer. The probability of sighting an individual on the winter haulout during daylight hours was 15% for lactating females and 40% for immature animals.