Annabelle C. Singer
Massachusetts Institute of Technology
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Featured researches published by Annabelle C. Singer.
Neuron | 2009
Annabelle C. Singer; Loren M. Frank
Remembering experiences that lead to reward is essential for survival. The hippocampus is required for forming and storing memories of events and places, but the mechanisms that associate specific experiences with rewarding outcomes are not understood. Event memory storage is thought to depend on the reactivation of previous experiences during hippocampal sharp wave ripples (SWRs). We used a sequence switching task that allowed us to examine the interaction between SWRs and reward. We compared SWR activity after animals traversed spatial trajectories and either received or did not receive a reward. Here, we show that rat hippocampal CA3 principal cells are significantly more active during SWRs following receipt of reward. This SWR activity was further enhanced during learning and reactivated coherent elements of the paths associated with the reward location. This enhanced reactivation in response to reward could be a mechanism to bind rewarding outcomes to the experiences that precede them.
Neuron | 2013
Annabelle C. Singer; Margaret F. Carr; Mattias Karlsson; Loren M. Frank
The hippocampus frequently replays memories of past experiences during sharp-wave ripple (SWR) events. These events can represent spatial trajectories extending from the animals current location to distant locations, suggesting a role in the evaluation of upcoming choices. While SWRs have been linked to learning and memory, the specific role of awake replay remains unclear. Here we show that there is greater coordinated neural activity during SWRs preceding correct, as compared to incorrect, trials in a spatial alternation task. As a result, the proportion of cell pairs coactive during SWRs was predictive of subsequent correct or incorrect responses on a trial-by-trial basis. This effect was seen specifically during early learning, when the hippocampus is essential for task performance. SWR activity preceding correct trials represented multiple trajectories that included both correct and incorrect options. These results suggest that reactivation during awake SWRs contributes to the evaluation of possible choices during memory-guided decision making.
The Journal of Neuroscience | 2010
Annabelle C. Singer; Mattias Karlsson; Ana R. Nathe; Margaret F. Carr; Loren M. Frank
To learn we must identify and remember experiences uniquely but also generalize across experiences to extract common features. Hippocampal place cells can show similar firing patterns across locations, but the functional significance of this repetitive activity and the role of experience and learning in generating it are not understood. We therefore examined rat hippocampal place cell activity in the context of spatial tasks with multiple similar spatial trajectories. We found that, in environments with repeating elements, about half of the recorded place cells showed path-equivalent firing, where individual neurons are active in multiple similar locations. In contrast, place cells from animals performing a similar task in an environment with fewer similar elements were less likely to fire in a path-equivalent manner. Moreover, in the environment with multiple repeating elements, path equivalence developed with experience in the task, and increased path equivalence was associated with increased moment-by-moment correlations between pairs of path-equivalent neurons. As a result, correlated firing among path-equivalent neurons increased with experience. These findings suggest that coordinated hippocampal ensembles can encode generalizations across locations. Thus, path-equivalent ensembles are well suited to encode similarities among repeating elements, providing a framework for associating specific behaviors with multiple locations, while neurons without this repetitive structure maintain a distinct population code.
Learning & Memory | 2015
Brian Douglas Allen; Annabelle C. Singer; Edward S. Boyden
Over the last decade, there has been much excitement about the use of optogenetic tools to test whether specific cells, regions, and projection pathways are necessary or sufficient for initiating, sustaining, or altering behavior. However, the use of such tools can result in side effects that can complicate experimental design or interpretation. The presence of optogenetic proteins in cells, the effects of heat and light, and the activity of specific ions conducted by optogenetic proteins can result in cellular side effects. At the network level, activation or silencing of defined neural populations can alter the physiology of local or distant circuits, sometimes in undesired ways. We discuss how, in order to design interpretable behavioral experiments using optogenetics, one can understand, and control for, these potential confounds.
Nature Protocols | 2018
Annabelle C. Singer; Anthony Martorell; J. Miller Douglas; Fatema Abdurrob; Matthew K. Attokaren; John Tipton; Hansruedi Mathys; Chinnakkaruppan Adaikkan; Li-Huei Tsai
Microglia, the primary immune cells of the brain, play a key role in pathological and normal brain function. Growing efforts aim to reveal how these cells may be harnessed to treat both neurodegenerative diseases such as Alzheimer’s and developmental disorders such as schizophrenia and autism. We recently showed that using noninvasive exposure to 40-Hz white-light (4,000 K) flicker to drive 40-Hz neural activity transforms microglia into an engulfing state and reduces amyloid beta, a peptide thought to initiate neurotoxic events in Alzheimer’s disease (AD). This article describes how to construct an LED-based light-flicker apparatus, expose animals to 40-Hz flicker and control conditions, and perform downstream assays to study the effects of these stimuli. Light flicker is simple, faster to implement, and noninvasive, as compared with driving 40-Hz activity using optogenetics; however, it does not target specific cell types, as is achievable with optogenetics. This noninvasive approach to driving 40-Hz neural activity should enable further research into the interactions between neural activity, molecular pathology, and the brain’s immune system. Construction of the light-flicker system requires ~1 d and some electronics experience or available guidance. The flicker manipulation and assessment can be completed in a few days, depending on the experimental design.This protocol describes a noninvasive approach to evoke microglial engulfment and reduce amyloid levels in mouse brain. The authors describe assembly and operation of a light-flicker system, as well as assessment of the molecular and cellular effects.
Nature | 2018
Hannah Iaccarino; Annabelle C. Singer; Anthony Martorell; Andrii Rudenko; Fan Gao; Tyler Z. Gillingham; Hansruedi Mathys; Jinsoo Seo; Oleg Kritskiy; Fatema Abdurrob; Chinnakkaruppan Adaikkan; Rebecca G. Canter; Richard Rueda; Emery N. Brown; Edward S. Boyden; Li-Huei Tsai
Changes in gamma oscillations (20–50 Hz) have been observed in several neurological disorders. However, the relationship between gamma oscillations and cellular pathologies is unclear. Here we show reduced, behaviourally driven gamma oscillations before the onset of plaque formation or cognitive decline in a mouse model of Alzheimer’s disease. Optogenetically driving fast-spiking parvalbumin-positive (FS-PV)-interneurons at gamma (40 Hz), but not other frequencies, reduces levels of amyloid-β (Aβ)1–40 and Aβ 1–42 isoforms. Gene expression profiling revealed induction of genes associated with morphological transformation of microglia, and histological analysis confirmed increased microglia co-localization with Aβ. Subsequently, we designed a non-invasive 40 Hz light-flickering regime that reduced Aβ1–40 and Aβ1–42 levels in the visual cortex of pre-depositing mice and mitigated plaque load in aged, depositing mice. Our findings uncover a previously unappreciated function of gamma rhythms in recruiting both neuronal and glial responses to attenuate Alzheimer’s-disease-associated pathology.
The Journal of Neuroscience | 2017
Ilya Kolb; Giovanni Talei Franzesi; Michael Wang; Suhasa B. Kodandaramaiah; Craig R. Forest; Edward S. Boyden; Annabelle C. Singer
Repeated sequences of neural activity are a pervasive feature of neural networks in vivo and in vitro. In the hippocampus, sequential firing of many neurons over periods of 100–300 ms reoccurs during behavior and during periods of quiescence. However, it is not known whether the hippocampus produces longer sequences of activity or whether such sequences are restricted to specific network states. Furthermore, whether long repeated patterns of activity are transmitted to single cells downstream is unclear. To answer these questions, we recorded intracellularly from hippocampal CA1 of awake, behaving male mice to examine both subthreshold activity and spiking output in single neurons. In eight of nine recordings, we discovered long (900 ms) reoccurring subthreshold fluctuations or “repeats.” Repeats generally were high-amplitude, nonoscillatory events reoccurring with 10 ms precision. Using statistical controls, we determined that repeats occurred more often than would be expected from unstructured network activity (e.g., by chance). Most spikes occurred during a repeat, and when a repeat contained a spike, the spike reoccurred with precision on the order of ≤20 ms, showing that long repeated patterns of subthreshold activity are strongly connected to spike output. Unexpectedly, we found that repeats occurred independently of classic hippocampal network states like theta oscillations or sharp-wave ripples. Together, these results reveal surprisingly long patterns of repeated activity in the hippocampal network that occur nonstochastically, are transmitted to single downstream neurons, and strongly shape their output. This suggests that the timescale of information transmission in the hippocampal network is much longer than previously thought. SIGNIFICANCE STATEMENT We found long (≥900 ms), repeated, subthreshold patterns of activity in CA1 of awake, behaving mice. These repeated patterns (“repeats”) occurred more often than expected by chance and with 10 ms precision. Most spikes occurred within repeats and reoccurred with a precision on the order of 20 ms. Surprisingly, there was no correlation between repeat occurrence and classical network states such as theta oscillations and sharp-wave ripples. These results provide strong evidence that long patterns of activity are repeated and transmitted to downstream neurons, suggesting that the hippocampus can generate longer sequences of repeated activity than previously thought.
The Journal of Neuroscience | 2017
Jin Hyung Lee; Anatol C. Kreitzer; Annabelle C. Singer; Nicholas D. Schiff
eLife | 2018
Suhasa B. Kodandaramaiah; Francisco J. Flores; Gregory L. Holst; Annabelle C. Singer; Xue Han; Emery N. Brown; Edward S. Boyden; Craig R. Forest
Journal of Neurophysiology | 2017
Annabelle C. Singer; Giovanni Talei Franzesi; Suhasa B. Kodandaramaiah; Francisco J. Flores; Jeremy D. Cohen; Albert K. Lee; Christoph Börgers; Craig R. Forest; Nancy Kopell; Edward S. Boyden