Anne Tresset

Ancient DNA, pig domestication, and the spread of the Neolithic into Europe

The Neolithic Revolution began 11,000 years ago in the Near East and preceded a westward migration into Europe of distinctive cultural groups and their agricultural economies, including domesticated animals and plants. Despite decades of research, no consensus has emerged about the extent of admixture between the indigenous and exotic populations or the degree to which the appearance of specific components of the “Neolithic cultural package” in Europe reflects truly independent development. Here, through the use of mitochondrial DNA from 323 modern and 221 ancient pig specimens sampled across western Eurasia, we demonstrate that domestic pigs of Near Eastern ancestry were definitely introduced into Europe during the Neolithic (potentially along two separate routes), reaching the Paris Basin by at least the early 4th millennium B.C. Local European wild boar were also domesticated by this time, possibly as a direct consequence of the introduction of Near Eastern domestic pigs. Once domesticated, European pigs rapidly replaced the introduced domestic pigs of Near Eastern origin throughout Europe. Domestic pigs formed a key component of the Neolithic Revolution, and this detailed genetic record of their origins reveals a complex set of interactions and processes during the spread of early farmers into Europe.

Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs.

The extinct aurochs (Bos primigenius primigenius) was a large type of cattle that ranged over almost the whole Eurasian continent. The aurochs is the wild progenitor of modern cattle, but it is unclear whether European aurochs contributed to this process. To provide new insights into the demographic history of aurochs and domestic cattle, we have generated high-confidence mitochondrial DNA sequences from 59 archaeological skeletal finds, which were attributed to wild European cattle populations based on their chronological date and/or morphology. All pre-Neolithic aurochs belonged to the previously designated P haplogroup, indicating that this represents the Late Glacial Central European signature. We also report one new and highly divergent haplotype in a Neolithic aurochs sample from Germany, which points to greater variability during the Pleistocene. Furthermore, the Neolithic and Bronze Age samples that were classified with confidence as European aurochs using morphological criteria all carry P haplotype mitochondrial DNA, suggesting continuity of Late Glacial and Early Holocene aurochs populations in Europe. Bayesian analysis indicates that recent population growth gives a significantly better fit to our data than a constant-sized population, an observation consistent with a postglacial expansion scenario, possibly from a single European refugial population. Previous work has shown that most ancient and modern European domestic cattle carry haplotypes previously designated T. This, in combination with our new finding of a T haplotype in a very Early Neolithic site in Syria, lends persuasive support to a scenario whereby gracile Near Eastern domestic populations, carrying predominantly T haplotypes, replaced P haplotype-carrying robust autochthonous aurochs populations in Europe, from the Early Neolithic onward. During the period of coexistence, it appears that domestic cattle were kept separate from wild aurochs and introgression was extremely rare.

Genomic and archaeological evidence suggest a dual origin of domestic dogs

A dogged investigation of domestication The history of how wolves became our pampered pooches of today has remained controversial. Frantz et al. describe high-coverage sequencing of the genome of an Irish dog from the Bronze Age as well as ancient dog mitochondrial DNA sequences. Comparing ancient dogs to a modern worldwide panel of dogs shows an old, deep split between East Asian and Western Eurasian dogs. Thus, dogs were domesticated from two separate wolf populations on either side of the Old World. Science, this issue p. 1228 Dogs may have been domesticated independently in Eastern and Western Eurasia from distinct wolf populations. The geographic and temporal origins of dogs remain controversial. We generated genetic sequences from 59 ancient dogs and a complete (28x) genome of a late Neolithic dog (dated to ~4800 calendar years before the present) from Ireland. Our analyses revealed a deep split separating modern East Asian and Western Eurasian dogs. Surprisingly, the date of this divergence (~14,000 to 6400 years ago) occurs commensurate with, or several millennia after, the first appearance of dogs in Europe and East Asia. Additional analyses of ancient and modern mitochondrial DNA revealed a sharp discontinuity in haplotype frequencies in Europe. Combined, these results suggest that dogs may have been domesticated independently in Eastern and Western Eurasia from distinct wolf populations. East Eurasian dogs were then possibly transported to Europe with people, where they partially replaced European Paleolithic dogs.

The use of isotope ratios to test for seaweed eating in sheep

The primitive sheep of North Ronaldsay Island (Orkney), which feed almost exclusively on seaweed, have developed physiological features linked to that diet. The use of seaweed to feed domestic animals, attested for centuries in north-western Europe, may have appeared soon after the arrival of the first domestic herds during the 5th and 4th millennia BC . The use of isotope analysis of sheep tooth enamel as a means to investigate seaweed grazing in prehistoric times was tested. The teeth of five modern North Ronaldsay sheep were analysed for carbon (δ 13 C) and oxygen (δ 18 O) isotope ratios. Owing to differences in the δ 13 C of marine vs terrestrial plants, the seaweed-eating sheep have δ 13 C values clearly outside the range expected for terrestrial plant eaters. Results show that one group of individuals relied exclusively on seaweed throughout the year. In a second group, terrestrial plants provided about half the dietary carbon pool during the summer. In individuals relying exclusively on seaweed, the amplitude of seasonal change in the δ 18 O values of tooth enamel was low, possibly because of ingestion of marine water through fresh seaweed consumption. Analysis of a sheep tooth from the Neolithic site of Holm of Papa Westray (Orkney, Scotland), suggests that as early as at the beginning of the 4th millennium BC in the Orkney, seaweed contributed to the winter diet of domestic sheep.

Dual origins of dairy cattle farming--evidence from a comprehensive survey of European Y-chromosomal variation.

Background Diversity patterns of livestock species are informative to the history of agriculture and indicate uniqueness of breeds as relevant for conservation. So far, most studies on cattle have focused on mitochondrial and autosomal DNA variation. Previous studies of Y-chromosomal variation, with limited breed panels, identified two Bos taurus (taurine) haplogroups (Y1 and Y2; both composed of several haplotypes) and one Bos indicus (indicine/zebu) haplogroup (Y3), as well as a strong phylogeographic structuring of paternal lineages. Methodology and Principal Findings Haplogroup data were collected for 2087 animals from 138 breeds. For 111 breeds, these were resolved further by genotyping microsatellites INRA189 (10 alleles) and BM861 (2 alleles). European cattle carry exclusively taurine haplotypes, with the zebu Y-chromosomes having appreciable frequencies in Southwest Asian populations. Y1 is predominant in northern and north-western Europe, but is also observed in several Iberian breeds, as well as in Southwest Asia. A single Y1 haplotype is predominant in north-central Europe and a single Y2 haplotype in central Europe. In contrast, we found both Y1 and Y2 haplotypes in Britain, the Nordic region and Russia, with the highest Y-chromosomal diversity seen in the Iberian Peninsula. Conclusions We propose that the homogeneous Y1 and Y2 regions reflect founder effects associated with the development and expansion of two groups of dairy cattle, the pied or red breeds from the North Sea and Baltic coasts and the spotted, yellow or brown breeds from Switzerland, respectively. The present Y1-Y2 contrast in central Europe coincides with historic, linguistic, religious and cultural boundaries.

Last hunter-gatherers and first farmers of Europe

The Neolithisation of Europe has seen the transformation of hunting-gathering societies into farming communities. At least partly exogenous in its origins, this process led to major transformations in many aspects of life-styles, such as social structures, land use or diet. It involved the arrival of new human populations and gave way to the importation, intentional or unwanted of many non-European animal and plant species. It also provoked important changes in interactions between humans and natural environments. In many respects, it set the foundations of long-term European peasantry developments and prefigured later agropastoral colonizations. As such, it must be seen as a major turning point in the history of European populations.

The genetic prehistory of domesticated cattle from their origin to the spread across Europe

BackgroundCattle domestication started in the 9th millennium BC in Southwest Asia. Domesticated cattle were then introduced into Europe during the Neolithic transition. However, the scarcity of palaeogenetic data from the first European domesticated cattle still inhibits the accurate reconstruction of their early demography. In this study, mitochondrial DNA from 193 ancient and 597 modern domesticated cattle (Bos taurus) from sites across Europe, Western Anatolia and Iran were analysed to provide insight into the Neolithic dispersal process and the role of the local European aurochs population during cattle domestication.ResultsUsing descriptive summary statistics and serial coalescent simulations paired with approximate Bayesian computation we find: (i) decreasing genetic diversity in a southeast to northwest direction, (ii) strong correlation of genetic and geographical distances, iii) an estimated effective size of the Near Eastern female founder population of 81, iv) that the expansion of cattle from the Near East and Anatolia into Europe does not appear to constitute a significant bottleneck, and that v) there is evidence for gene-flow between the Near Eastern/Anatolian and European cattle populations in the early phases of the European Neolithic, but that it is restricted after 5,000 BCE.ConclusionsThe most plausible scenario to explain these results is a single and regionally restricted domestication process of cattle in the Near East with subsequent migration into Europe during the Neolithic transition without significant maternal interbreeding with the endogenous wild stock. Evidence for gene-flow between cattle populations from Southwestern Asia and Europe during the earlier phases of the European Neolithic points towards intercontinental trade connections between Neolithic farmers.

Stable isotope insights (δ18O, δ13C) into cattle and sheep husbandry at Bercy (Paris, France, 4th millennium BC): birth seasonality and winter leaf foddering

Abstract Bercy is a prehistoric village sited by the Seine river (Paris, France), whose main period of occupation was dated to the very beginning of the 4th millennium BC. The animal subsistence economy relied heavily on cattle husbandry, complemented by other species including sheep. Cattle and sheep isotopic history (δ13C, δ18O) was investigated at the seasonal scale, through sequential sampling in tooth enamel, providing new insights into seasonality of birth and diet. Sheep were lambing in mid-spring, only slightly later than expected from what is observed nowadays in temperate Europe at similar latitude. Cattle were born over a period spanning approximately six months, which was an unexpected result compared with a two to three months calving period in free-ranging cattle populations. The extension of the calving period might have been related to seasonal food supplementation. Some cattle and some sheep fed on a 13C-depleted resource in winter, potentially leafy fodder. A direct consequence of an extended calving period would be the availability of cow milk, which would have covered the whole year at Bercy. This is important information in a context where the exploitation of cattle milk by the human community was highly suspected from the demographic management of the herd.

Unravelling the complexity of domestication: a case study using morphometrics and ancient DNA analyses of archaeological pigs from Romania

Current evidence suggests that pigs were first domesticated in Eastern Anatolia during the ninth millennium cal BC before dispersing into Europe with Early Neolithic farmers from the beginning of the seventh millennium. Recent ancient DNA (aDNA) research also indicates the incorporation of European wild boar into domestic stock during the Neolithization process. In order to establish the timing of the arrival of domestic pigs into Europe, and to test hypotheses regarding the role European wild boar played in the domestication process, we combined a geometric morphometric analysis (allowing us to combine tooth size and shape) of 449 Romanian ancient teeth with aDNA analysis. Our results firstly substantiate claims that the first domestic pigs in Romania possessed the same mtDNA signatures found in Neolithic pigs in west and central Anatolia. Second, we identified a significant proportion of individuals with large molars whose tooth shape matched that of archaeological (likely) domestic pigs. These large ‘domestic shape’ specimens were present from the outset of the Romanian Neolithic (6100–5500 cal BC) through to later prehistory, suggesting a long history of admixture between introduced domestic pigs and local wild boar. Finally, we confirmed a turnover in mitochondrial lineages found in domestic pigs, possibly coincident with human migration into Anatolia and the Levant that occurred in later prehistory.

From Harvesting the Sea to Stock Rearing Along the Atlantic Façade of North-West Europe

Abstract By 3000 BC, farmers had settled most of the small islands of north-western Europe. This implies the transportation of domestic animals by sea, sometimes over long distances, and the adaptation of herding techniques to new marine environments. While many of the same islands were in use in the Mesolithic period, the nature and extent of this use appears to have been quite different. Zooarchaeological and stable isotopic analysis converge to suggest that the diet of human communities at this time was heavily reliant on marine foods. Neolithic settlements located in the same setting offer a contrasting view. Shell middens were still present at this time, and the remains of fish, marine birds and sea mammals confirm that marine resources were still exploited, but isotopic evidence highlights their minor contribution to the diet. This, combined with the faunal dominance of cattle, sheep and pig, indicates a reliance on domesticated resources. By the end of the Neolithic, even the most peripheral islands of north-western Europe were being exploited primarily for their terrestrial resources. This paper presents evidence from selected sites in western France and Orkney, and then proceeds to offer some possible explanations for the observed patterns of small island use in the Neolithic.