Anuva Samanta

Exploring Hydrophobic Subdomain IIA of the Protein Bovine Serum Albumin in the Native, Intermediate, Unfolded, and Refolded States by a Small Fluorescence Molecular Reporter

A simple intramolecular charge transfer (ICT) compound, 5-(4-dimethylamino-phenyl)-penta-2,4-dienoic acid methyl ester (DPDAME), has been documented to be a potential molecular reporter for probing microheterogeneous environments of a model transport protein bovine serum albumin (BSA) using spectroscopic techniques. Meteoric modifications to the emission profile of DPDAME upon addition of BSA come out to be a result of its binding to hydrophobic subdomain IIA. The highly polarity-sensitive ICT emission of DPDAME is found to be a proficient extrinsic molecular reporter for efficient mapping of native, intermediate, unfolded, and refolded states of the protein. Experimental data coupled with a reinforcing support from theoretical simulation using CHARMM22 software confirm the binding site of the probe to be the subdomain IIA of BSA, while FRET study reveals a remarkably close approach of our extrinsic molecular reporter to Trp-212 (in domain IIA): the distance between DPDAME and Trp-212 is 1.437 nm. The caliber of DPDAME as an external fluorescence marker also extends to the depiction of protein-surfactant (BSA-SDS) interaction to commendable fruition. Additionally, the protective action of small amounts of SDS on urea-denatured protein is documented by polarity-sensitive ICT emission of the probe. The present study also reflects the enhancement of the stability of BSA with respect to chemically induced denaturation by urea as a result of binding to the probe DPDAME.

Modulation of Excited-State Intramolecular Proton Transfer Reaction of 1-Hydroxy-2-naphthaldehyde in Different Supramolecular Assemblies

The excited-state intramolecular proton transfer (ESIPT) reaction of 1-hydroxy-2-naphthaldehyde (HN12) has been studied within the interior of the supramolecular assemblies of alpha-, beta-, and gamma-cyclodextrins (CD) and biomimicking environments of ionic (SDS) and non-ionic (TW-20) micelles. Fluorescence measurements are used to investigate the effect of various supramolecular assemblies on the ESIPT reaction by monitoring the large Stokes-shifted tautomer emission of HN12. Enhanced tautomer emission in the microencapsulated state predicts favorable ESIPT reaction in the supramoleuclar assemblies. Benesi-Hildebrand plots have been employed to ascertain that the stoichiometric ratios of the complexes formed between HN12 and CDs are 1:2, 1:1, and 1:1 for alpha-, beta-, and gamma-CD, respectively. The binding constants (K(1)) and free-energy change (DeltaG) for inclusion complexation are also determined from the linearized Benesi-Hildebrand plots. Steady-state fluorescence anisotropy, REES, excitation anisotropy, and fluorescence lifetime measurements are in line with other experimental findings. Differential action of urea on SDS and TW-20-bound probe has also been investigated.

Spectroscopic probe analysis for exploring probe–protein interaction: A mapping of native, unfolding and refolding of protein bovine serum albumin by extrinsic fluorescence probe

Steady state and dynamic fluorescence measurements have been used to investigate interaction between Bovine Serum Albumin (BSA) and fluorescence probe para-N,N-dimethylamino orthohydroxy benzaldehyde (PDOHBA), a structurally important molecule exhibiting excited state coupled proton transfer (PT) and charge transfer (CT) reaction. Fluorescence anisotropy, acrylamide quenching, and time resolved fluorescence measurements corroborate the binding nature of the probe with protein. The binding constant between BSA and PDOHBA has been determined by using Benesi-Hildebrand and Stern-Volmer equations. The negative value of ΔG indicates the spontaneity of this probe-protein complexation process. Observations from synchronous, three dimensional fluorescence spectra and circular dichroism spectra point toward the fact that the hydrophobicity as well as α-helix content of BSA are altered in presence of probe PDOHBA. The PT band of PDOHBA is found to be an excellent reporter for the mapping of destructive and protective behavior of SDS with variation of chaotrope concentration.

Preferential molecular encapsulation of an ICT fluorescence probe in the supramolecular cage of cucurbit[7]uril and β-cyclodextrin: an experimental and theoretical approach.

Supramolecular interaction between an intramolecular charge transfer (ICT) probe, N,N-dimethylaminonaphthyl-(acrylo)-nitrile (DMANAN), and two well-recognized macrocyclic hosts, cucurbit[7]uril (CB7) and β-cyclodextrin (β-CD), has been studied in aqueous medium by absorption, emission, time-resolved measurements, and (1)H NMR spectroscopic methods. The changes in the profiles of the fluorescence spectra illustrate significant modifications in fluorescence intensity, decay time, and quantum yield upon confinement of probe within the hydrophobic cavity of the hosts. Using the Benesi-Hildebrand relationship, the stoichiometric ratio as well as the binding constant of the host-guest complexation has been estimated. The stable inclusion complexes of the probe with different hosts have been supported by DFT and ONIOM based quantum chemical calculations. These methods of measurement establish that the acceptor group of the probe resides inside the hydrophobic cavity of the macrocycle. The competitive binding of metal ions and cationic surfactants to CB7 has been excellently mapped with this guest fluorosensor.

Excited State Lactim to Lactam Type Tautomerization Reaction in 5-(4-Fluorophenyl)-2-Hydroxypyridine: Spectroscopic Study and Quantum Chemical Calculation

The photophysical properties of 5-(4-fluorophenyl)-2-hydroxypyridine (FP2HP) have been studied by steady state and time resolved spectroscopy in combination with quantum chemical calculations. The molecule FP2HP exists as lactim and lactam form in the ground state due to small stability difference but does not undergo lactim to lactam isomerisation due to high barrier energy. Whereas in the excited state the lactim form undergoes tautomerization producing red shifted emission of the lactam tautomer along with the local emission of the lactim form. In polar protic solvents, the barrier for lactim-lactam tautomerization rapidly decreases forming the lactam tautomer only. Temperature has pronounced effect on the excited state tautomerization equilibrium and is clearly reflected in the measured equilibrium constant (Ktau0) and free energy change (ΔG0). Structural calculations at Hartree Fock and Density Functional Theory levels, calculated stability of the isomers in different solvents using Polarized Continuum Model and the theoretical potential energy surfaces for the ground and excited states along the proton transfer coordinate are reported for the tautomeric equilibrium of FP2HP.

Studies of bio-mimetic medium of ionic and non-ionic micelles by a simple charge transfer fluorescence probe N,N-dimethylaminonapthyl-(acrylo)-nitrile.

In this report we have studied micellization process of anionic, cationic and non-ionic surfactants using N,N-dimethylaminonapthyl-(acrylo)-nitrile (DMANAN) as an external fluorescence probe. Micropolarity, microviscosity, critical micellar concentration of these micelles based on steady state absorption and fluorescence and time resolved emission spectroscopy of the probe DMANAN show that the molecule resides in the micelle-water interface for ionic micelles and in the core for the non-ionic micelle. The effect of variation of pH of the micellar solution as well as fluorescence quenching measurements of DMANAN provide further support for the location of the probe in the micelles.

On the Photophysics of 3,5,6-Trichlorosalicylic Acid: Spectroscopic Study Combined with Hartree-Fock and Density Functional Theory Calculations

The present contribution reports a detailed photophysical study of a simple salicylic acid derivative viz., 3,5,6-Trichlorosalicylic acid (TCSA) based on steady state absorption, emission and time-resolved emission spectroscopy. Anomalous “dual” emission coupled with a large Stokes shift and negligible solvent polarity dependence marks the spectroscopic signature for Excited State Intramolecular Proton Transfer (ESIPT) reaction. Variation of medium polarity and pH of the medium have been implemented as fruitful tools to decipher the photophysics of TCSA. Quantum chemical calculation by ab initio Hartree-Fock and Density Functional Theory methods yields consistent results to follow experimental findings with distinct illustration of the inoperativeness of GSIPT reaction as well as occurrence of ESIPT process. A rigorous comparison of our experimental and theoretical measurements of TCSA with the parent compound salicylic acid, 5-chlorosalicylic acid and 3,5-dichlorosalicylic acid reveals the impact of chlorine substitution on the photophysics of the studied molecular systems with simultaneous exploration of the complexities induced in TCSA with respect to salicylic acid.

Modulated photophysics of a cationic DNA-staining dye inside protein bovine serum albumin: Study of binding interaction and structural changes of protein

The binding affinity of cationic DNA-staining dye, propidium iodide, with transport protein, bovine serum albumin, has been explored using UV-vis absorption, fluorescence, and circular dichroism spectroscopy. Steady state and time resolved fluorescence studies authenticate that fluorescence quenching of bovine serum albumin by propidium iodide is due to bovine serum albumin-propidium iodide complex formation. Thermodynamic parameters obtained from temperature dependent spectral studies cast light on binding interaction between the probe and protein. Site marker competitive binding has been encountered using phenylbutazone and flufenamic acid for site I and site II, respectively. Energy transfer efficiency and distance between bovine serum albumin and propidium iodide have been determined using Förster mechanism. Structural stabilization or destabilization of protein by propidium iodide has been investigated by urea denaturation study. The circular dichroism study as well as FT-IR measurement demonstrates some configurational changes of the protein in presence of the dye. Docking studies support the experimental data thereby reinforcing the binding site of the probe to the subdomain IIA of bovine serum albumin.

Novel proton transfer fluorescence probe 2-hydroxy-pyridine and 5-(4-fluorophenyl)-2-hydroxypyridine for studying native, denatured and renatured state of protein Bovine Serum Albumin.

The binding interactions of protein Bovine Serum Albumin (BSA) in its folding, unfolding and refolding states with proton transfer fluorescence probe 2-hydroxy-pyridine (2HP) and 5-(4-fluorophenyl)-2-hydroxypyridine (FP2HP) have been studied using steady state and time-resolved spectroscopy. The higher degree of spectral overlap between donor fluorescence and acceptor absorption is responsible for energy transfer from donor tryptophan to the acceptor probe and has shown remarkable sensitivity of these fluorophore for mapping the protein environment. During denaturation of BSA by guanidine hydrochloride, it shows two peaks of Trp-212 and Tyr-263. Reduction of fluorescence intensity of two peaks upon binding to the probes indicates that these probes not only bind with Trp-212 but also with Tyr-263. The steady state results are also confirmed by time-resolved studies.

Implication toward a Simple Strategy To Generate Efficiency-Tunable Fluorescence Resonance Energy Transfer Emission: Intertwining Medium-Polarity-Sensitive Intramolecular Charge Transfer Emission to Fluorescence Resonance Energy Transfer

The present contribution describes a unique strategy to produce tunable Fluorescence Resonance Energy Transfer (FRET) emission only as a function of medium properties through the implementation of Intramolecular Charge Transfer (ICT) reaction as the donor counterpart. Solvent sensitive emission (and quantum yield, Phi(D)) of N,N-dimethylaminonaphthylacrylonitrile (DMANAN) (donor) leads to modulation of spectral overlap (J(lambda)) between donor emission and acceptor (Acridine orange (AO)) absorption spectra whereby yielding differential FRET efficiency in various solvents, i.e., intertwining of two photoprocesses viz. ICT and FRET results in realization of the claimed process in the title.