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Dive into the research topics where Arifa Naeem is active.

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Featured researches published by Arifa Naeem.


Nature Biotechnology | 2013

Photoreceptor precursors derived from three-dimensional embryonic stem cell cultures integrate and mature within adult degenerate retina

Anai Gonzalez-Cordero; Emma L. West; Rachael A. Pearson; Yanai Duran; Livia S. Carvalho; Colin Chu; Arifa Naeem; Samuel J.I. Blackford; Anastasios Georgiadis; Jorn Lakowski; Mike Hubank; Alexander J. Smith; James W. Bainbridge; Jane C. Sowden; Robin R. Ali

Irreversible blindness caused by loss of photoreceptors may be amenable to cell therapy. We previously demonstrated retinal repair1 and restoration of vision through transplantation of photoreceptor precursors obtained from post-natal retinas into visually impaired adult mice2,3. Considerable progress has been made in differentiating embryonic stem cells (ESCs) in vitro toward photoreceptor lineages4-6. However, the capability of ESC-derived photoreceptors to integrate after transplantation has not been demonstrated unequivocally. Here, to isolate photoreceptor precursors fit for transplantation, we adapted a recently reported three-dimensional (3D) differentiation protocol that generates neuroretina from mouse ESCs6. We show that Rhop.GFP-selected rod precursors derived by this protocol integrate within degenerate retinae of adult mice and mature into outer segment–bearing photoreceptors. Notably, ESC-derived precursors at a developmental stage similar to postnatal days 4-8 integrate more efficiently than cells at other stages. This study shows conclusively that ESCs can provide a source of photoreceptors for retinal cell transplantation.


Nature Communications | 2016

Donor and host photoreceptors engage in material transfer following transplantation of post-mitotic photoreceptor precursors

Rachael A. Pearson; Anai Gonzalez-Cordero; Emma L. West; Joana Ribeiro; Nozie D. Aghaizu; Debbie Goh; Robert D. Sampson; Anastasios Georgiadis; P. V. Waldron; Yanai Duran; Arifa Naeem; Magdalena Kloc; Enrico Cristante; Kamil Kruczek; Katherine Warre-Cornish; Jane C. Sowden; Alexander J. Smith; Robin R. Ali

Photoreceptor replacement by transplantation is proposed as a treatment for blindness. Transplantation of healthy photoreceptor precursor cells into diseased murine eyes leads to the presence of functional photoreceptors within host retinae that express an array of donor-specific proteins. The resulting improvement in visual function was understood to be due to donor cells integrating within host retinae. Here, however, we show that while integration occurs the majority of donor-reporter-labelled cells in the host arises as a result of material transfer between donor and host photoreceptors. Material transfer does not involve permanent donor–host nuclear or cell–cell fusion, or the uptake of free protein or nucleic acid from the extracellular environment. Instead, RNA and/or protein are exchanged between donor and host cells in vivo. These data require a re-evaluation of the mechanisms underlying rescue by photoreceptor transplantation and raise the possibility of material transfer as a strategy for the treatment of retinal disorders.


Stem Cells | 2015

Transplantation of Photoreceptor Precursors Isolated via a Cell Surface Biomarker Panel from Embryonic Stem Cell‐Derived Self‐Forming Retina

Jorn Lakowski; Anai Gonzalez-Cordero; Emma L. West; Yating Han; Emily Welby; Arifa Naeem; Samuel J.I. Blackford; James W. Bainbridge; Rachael A. Pearson; Robin R. Ali; Jane C. Sowden

Loss of photoreceptors due to retinal degeneration is a major cause of untreatable blindness. Cell replacement therapy, using pluripotent stem cell‐derived photoreceptor cells, may be a feasible future treatment. Achieving safe and effective cell replacement is critically dependent on the stringent selection and purification of optimal cells for transplantation. Previously, we demonstrated effective transplantation of post‐mitotic photoreceptor precursor cells labelled by fluorescent reporter genes. As genetically labelled cells are not desirable for therapy, here we developed a surface biomarker cell selection strategy for application to complex pluripotent stem cell differentiation cultures. We show that a five cell surface biomarker panel CD73(+)CD24(+)CD133(+)CD47(+)CD15(−) facilitates the isolation of photoreceptor precursors from three‐dimensional self‐forming retina differentiated from mouse embryonic stem cells. Importantly, stem cell‐derived cells isolated using the biomarker panel successfully integrate and mature into new rod photoreceptors in the adult mouse retinae after subretinal transplantation. Conversely, unsorted or negatively selected cells do not give rise to newly integrated rods after transplantation. The biomarker panel also removes detrimental proliferating cells prior to transplantation. Notably, we demonstrate how expression of the biomarker panel is conserved in the human retina and propose that a similar selection strategy will facilitate isolation of human transplantation‐competent cells for therapeutic application. Stem Cells 2015;33:2469—2482


Stem cell reports | 2017

Recapitulation of Human Retinal Development from Human Pluripotent Stem Cells Generates Transplantable Populations of Cone Photoreceptors

Anai Gonzalez-Cordero; Kamil Kruczek; Arifa Naeem; Milan Fernando; Magdalena Kloc; Joana Ribeiro; Debbie Goh; Yanai Duran; Samuel J.I. Blackford; Laura Abelleira-Hervas; Robert D. Sampson; Ian O. Shum; Matthew J. Branch; Peter J. Gardner; Jane C. Sowden; James W. Bainbridge; Alexander J. Smith; Emma L. West; Rachael A. Pearson; Robin R. Ali

Summary Transplantation of rod photoreceptors, derived either from neonatal retinae or pluripotent stem cells (PSCs), can restore rod-mediated visual function in murine models of inherited blindness. However, humans depend more upon cone photoreceptors that are required for daylight, color, and high-acuity vision. Indeed, macular retinopathies involving loss of cones are leading causes of blindness. An essential step for developing stem cell-based therapies for maculopathies is the ability to generate transplantable human cones from renewable sources. Here, we report a modified 2D/3D protocol for generating hPSC-derived neural retinal vesicles with well-formed ONL-like structures containing cones and rods bearing inner segments and connecting cilia, nascent outer segments, and presynaptic structures. This differentiation system recapitulates human photoreceptor development, allowing the isolation and transplantation of a pure population of stage-matched cones. Purified human long/medium cones survive and become incorporated within the adult mouse retina, supporting the potential of photoreceptor transplantation for treating retinal degeneration.


Stem cell reports | 2017

Differentiation and Transplantation of Embryonic Stem Cell-Derived Cone Photoreceptors into a Mouse Model of End-Stage Retinal Degeneration

Kamil Kruczek; Anai Gonzalez-Cordero; Debbie Goh; Arifa Naeem; Mindaugas Jonikas; Samuel J.I. Blackford; Magdalena Kloc; Yanai Duran; Anastasios Georgiadis; Robert D. Sampson; Ryea N. Maswood; Alexander J. Smith; Sarah Decembrini; Yvan Arsenijevic; Jane C. Sowden; Rachael A. Pearson; Emma L. West; Robin R. Ali

Summary The loss of cone photoreceptors that mediate daylight vision represents a leading cause of blindness, for which cell replacement by transplantation offers a promising treatment strategy. Here, we characterize cone differentiation in retinas derived from mouse embryonic stem cells (mESCs). Similar to in vivo development, a temporal pattern of progenitor marker expression is followed by the differentiation of early thyroid hormone receptor β2-positive precursors and, subsequently, photoreceptors exhibiting cone-specific phototransduction-related proteins. We establish that stage-specific inhibition of the Notch pathway increases cone cell differentiation, while retinoic acid signaling regulates cone maturation, comparable with their actions in vivo. MESC-derived cones can be isolated in large numbers and transplanted into adult mouse eyes, showing capacity to survive and mature in the subretinal space of Aipl1−/− mice, a model of end-stage retinal degeneration. Together, this work identifies a robust, renewable cell source for cone replacement by purified cell suspension transplantation.


Stem cell reports | 2017

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells

Emily Welby; Jorn Lakowski; Valentina Di Foggia; Dimitri Budinger; Anai Gonzalez-Cordero; Aaron T. L. Lun; Michael Epstein; Aara Patel; Elisa Cuevas; Kamil Kruczek; Arifa Naeem; Federico Minneci; Mike Hubank; David Jones; John C. Marioni; Robin R. Ali; Jane C. Sowden

Summary Loss of cone photoreceptors, crucial for daylight vision, has the greatest impact on sight in retinal degeneration. Transplantation of stem cell-derived L/M-opsin cones, which form 90% of the human cone population, could provide a feasible therapy to restore vision. However, transcriptomic similarities between fetal and stem cell-derived cones remain to be defined, in addition to development of cone cell purification strategies. Here, we report an analysis of the human L/M-opsin cone photoreceptor transcriptome using an AAV2/9.pR2.1:GFP reporter. This led to the identification of a cone-enriched gene signature, which we used to demonstrate similar gene expression between fetal and stem cell-derived cones. We then defined a cluster of differentiation marker combination that, when used for cell sorting, significantly enriches for cone photoreceptors from the fetal retina and stem cell-derived retinal organoids, respectively. These data may facilitate more efficient isolation of human stem cell-derived cones for use in clinical transplantation studies.


Stem Cell Research & Therapy | 2018

Use of bioreactors for culturing human retinal organoids improves photoreceptor yields

Patrick Ovando-Roche; Emma L. West; Matthew J. Branch; Robert D. Sampson; Milan Fernando; Peter M.G. Munro; Anastasios Georgiadis; Matteo Rizzi; Magdalena Kloc; Arifa Naeem; Joana Ribeiro; Alexander J. Smith; Anai Gonzalez-Cordero; Robin R. Ali

BackgroundThe use of human pluripotent stem cell-derived retinal cells for cell therapy strategies and disease modelling relies on the ability to obtain healthy and organised retinal tissue in sufficient quantities. Generating such tissue is a lengthy process, often taking over 6 months of cell culture, and current approaches do not always generate large quantities of the major retinal cell types required.MethodsWe adapted our previously described differentiation protocol to investigate the use of stirred-tank bioreactors. We used immunohistochemistry, flow cytometry and electron microscopy to characterise retinal organoids grown in standard and bioreactor culture conditions.ResultsOur analysis revealed that the use of bioreactors results in improved laminar stratification as well as an increase in the yield of photoreceptor cells bearing cilia and nascent outer-segment-like structures.ConclusionsBioreactors represent a promising platform for scaling up the manufacture of retinal cells for use in disease modelling, drug screening and cell transplantation studies.


Scientific Reports | 2017

Human stem cell-derived retinal epithelial cells activate complement via collectin 11 in response to stress

Giorgia Fanelli; Anai Gonzalez-Cordero; Peter J. Gardner; Qi Peng; Milan Fernando; Magdalena Kloc; Conrad A. Farrar; Arifa Naeem; Peter Garred; Robin R. Ali; Steven H. Sacks

Age-related macular degeneration (AMD) is a major cause of blindness and is associated with complement dysregulation. The disease is a potential target for stem cell therapy but success is likely to be limited by the inflammatory response. We investigated the innate immune properties of human induced-pluripotent stem cell (iPSC)-derived RPE cells, particularly with regard to the complement pathway. We focused on collectin-11 (CL-11), a pattern recognition molecule that can trigger complement activation in renal epithelial tissue. We found evidence of constitutive and hypoxia-induced expression of CL-11 in iPS-RPE cells, and in the extracellular fluid. Complement activation on the cell surface occurred in conjunction with CL-11 binding. CL-11 has been shown to activate inflammatory responses through recognition of L-fucose, which we confirmed by showing that fucosidase-treated cells, largely, failed to activate complement. The presence of CL-11 in healthy murine and human retinal tissues confirmed the biological relevance of CL-11. Our data describe a new trigger mechanism of complement activation that could be important in disease pathogenesis and therapeutic interventions.


Presented at: Conference on Changing the Face of Modern Medicine - Stem Cells and Gene Therapy, Florence, ITALY. (2016) | 2016

Generation and transplantation of human pluripotent stem cell derived cone photoreceptors into models of retinal degeneration

Anai Gonzalez-Cordero; Kamil Kruczek; Arifa Naeem; Milan Fernando; Magdalena Kloc; Debbie Goh; Yanai Duran; Joana Ribeiro; Samuel J.I. Blackford; Robert D. Sampson; Matthew J. Branch; Emma L. West; Alexander J. Smith; Rachael A. Pearson; Robin R. Ali


Immunobiology | 2016

Collectin 11 expression by hypoxia-stressed iPSC-derived RPE cells is linked to complement activation

Giorgia Fanelli; Peter J. Gardner; Anai Gonzalez-Cordero; Peng Qi; Conrad A. Farrar; Arifa Naeem; Fernando Milan; Robin R. Ali; Steven H. Sacks

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Anai Gonzalez-Cordero

UCL Institute of Ophthalmology

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Robin R. Ali

UCL Institute of Ophthalmology

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Emma L. West

UCL Institute of Ophthalmology

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Rachael A. Pearson

UCL Institute of Ophthalmology

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Alexander J. Smith

UCL Institute of Ophthalmology

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Jane C. Sowden

UCL Institute of Child Health

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Kamil Kruczek

UCL Institute of Ophthalmology

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Magdalena Kloc

UCL Institute of Ophthalmology

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Samuel J.I. Blackford

UCL Institute of Ophthalmology

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Yanai Duran

UCL Institute of Ophthalmology

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