Arunee Wongkaew

Isolation of 55 microsatellite markers for Jatropha curcas and its closely related species

Jatropha curcas L. (physic nut) is native to Central America and now naturalized widely in many tropical and subtropical areas. Microsatellite markers were isolated and characterized. Eleven out of 55 markers showed polymorphisms, and the allelic variation was investigated using 26 accessions of J. curcas collected from several provinces in Thailand. Each marker showed 2 to 5 alleles and the average polymorphic information content (PIC) was 0.49. Thirty four markers (62 %) were also successfully amplified in J. integerrima, J. gossypifolia and J. podagrica.

Genetic diversity of physic nut (Jatropha curcas L.) revealed by SSR markers

Ten microsatellite markers were used to investigate genetic diversity and genetic structure among 32 accessions of Jatropha curcas. Low levels of average genetic diversity were observed (HE = 0.160). A dendrogram produced by the Unweighted Pair Group Method with Arithmetic Mean (UPGMA) based on Nei’s genetic distances revealed 3 groups among 32 accessions. The genetic differentiation (FST) among two groups was significant (P < 0.01). The model-based Bayesian clustering method indicated that a population structure (ΔK) was separated into two groups. The analysis of molecular variance (AMOVA) showed higher variability (63.753%) among groups than within groups (36.247%). These findings could assist in defining the best method of genetic conservation and studies in breeding programs for genetic improvement of J. curcas.

Isolation and characterization of purple acid phosphatase gene during seedling development in mungbean

Purple acid phosphatases (PAPs), which are normally found in plant tissues, can hydrolyze a broad spectrum of phosphate esters. In this study, a mungbean [Vigna radiata (L.) Wilczek cv. KPS1] acid phosphatase gene (VrPAP1) was isolated from seedling cotyledons. The full-length of VrPAP1 cDNA contained an open reading frame of 1 644 bp encoding 547 amino acid residues with a predicted molecular mass of 62.07 kDa. Sequence analysis showed that VrPAP1 is purple acid phosphatase. RNA blot analyses indicated that the VrPAP1 accumulated during the first hour in cotyledons of germinating seeds and reached a maximum expression after 24 h and then decreased. The VrPAP1 mRNA was observed in cotyledons, hypocotyls and leaves but not in radicles or dry seeds. DNA blot analysis indicated that VrPAP1 is a single copy gene in the mungbean genome.