Axel Strauß

Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K–T boundary in Madagascar

The geographic and temporal origins of Madagascars biota have long been in the center of debate. We reconstructed a time-tree including nearly all native nonflying and nonmarine vertebrate clades present on the island, from DNA sequences of two single-copy protein-coding nuclear genes (BDNF and RAG1) and a set of congruent time constraints. Reconstructions calculated with autocorrelated or independent substitution rates over clades agreed in placing the origins of the 31 included clades in Cretaceous to Cenozoic times. The two clades with sister groups in South America were the oldest, followed by those of a putative Asian ancestry that were significantly older than the prevalent clades of African ancestry. No colonizations from Asia occurred after the Eocene, suggesting that dispersal and vicariance of Asian/Indian groups were favored over a comparatively short period during, and shortly after, the separation of India and Madagascar. Species richness of clades correlates with their age but those clades that have a large proportion of species diversity in rainforests are significantly more species-rich. This finding suggests an underlying pattern of continuous speciation through time in Madagascars vertebrates, with accelerated episodes of adaptive diversification in those clades that succeeded radiating into the rainforests.

RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome

Transcription activator-like effector (TALE) proteins of the plant pathogenic bacterial genus Xanthomonas bind to and transcriptionally activate host susceptibility genes, promoting disease. Plant immune systems have taken advantage of this mechanism by evolving TALE binding sites upstream of resistance (R) genes. For example, the pepper Bs3 and rice Xa27 genes are hypersensitive reaction plant R genes that are transcriptionally activated by corresponding TALEs. Both R genes have a hallmark expression pattern in which their transcripts are detectable only in the presence and not the absence of the corresponding TALE. By transcriptome profiling using next-generation sequencing (RNA-seq), we tested whether we could avoid laborious positional cloning for the isolation of TALE-induced R genes. In a proof-of-principle experiment, RNA-seq was used to identify a candidate for Bs4C, an R gene from pepper that mediates recognition of the Xanthomonas TALE protein AvrBs4. We identified one major Bs4C candidate transcript by RNA-seq that was expressed exclusively in the presence of AvrBs4. Complementation studies confirmed that the candidate corresponds to the Bs4C gene and that an AvrBs4 binding site in the Bs4C promoter directs its transcriptional activation. Comparison of Bs4C with a nonfunctional allele that is unable to recognize AvrBs4 revealed a 2-bp polymorphism within the TALE binding site of the Bs4C promoter. Bs4C encodes a structurally unique R protein and Bs4C-like genes that are present in many solanaceous genomes seem to be as tightly regulated as pepper Bs4C. These findings demonstrate that TALE-specific R genes can be cloned from large-genome crops with a highly efficient RNA-seq approach.

Acoustic underwater signals with a probable function during competitive feeding in a tadpole

Acoustic communication is widespread among adult stages of terrestrial animals and fish and has also been observed in insect larvae. We report underwater acoustic communication in the larvae of a frog, Gephyromantis azzurrae, from Isalo, a sandstone massif in western Madagascar. According to our field data, these tadpoles live in streams and prefer habitats characterized by comparatively low temperatures, shallow water depth, and a relatively fast current. Feeding experiments indicated that the tadpoles are carnivorous and macrophagous. They consumed insect larvae and, to a lesser extent, small shrimps, and conspecific as well as heterospecific tadpoles. Calls of these tadpoles consisted either of single click notes or of irregular series of various clicks. Some complex calls have a pulsed structure with three to nine indistinct energy pulses. Production of the pulses coincided with rapid closure of the jaw sheaths and often with an upward movement of the body. Calls were emitted while attacking prey and occurred significantly more often when attacking conspecifics. Tadpoles that had not been fed for some time emitted sounds more frequently than those that had been regularly fed. The spectral frequency of the calls differed in tadpole groups of different size and was higher in groups of smaller tadpoles, suggesting that spectral frequency carries some information about tadpole size which might be important during competitive feeding to assess size and strength of competitors. This report differs from those for the larvae of South American horned frogs, Ceratophrys ornata. These are the only other tadpoles for which sound production has reliably been reported but the calls of Ceratophrys tadpoles occur mainly in a defensive context.

Nidicolous tadpoles rather than direct development in Malagasy frogs of the genus Gephyromantis

Frogs in the genus Gephyromantis from Madagascar were assumed to have a direct developmental mode, i.e. the complete embryonic and larval development within the egg, but recently free-swimming, exotrophic tadpoles of a few species have been found. Herein we provide detailed morphological descriptions of the tadpoles of five more species of this genus, indicating a developmental mode other than direct development in species of Gephyromantis. Tadpoles of Gephyromantis granulatus, G. sculpturatus, G. tschenki, and G. ventrimaculatus were found free-swimming in streams, and tadpoles of G. sp. aff. blanci were raised after hatching from clutches found in the leaf litter. All tadpoles were identified by DNA barcoding. The oral discs of all five species are characterized by the lack of many typical morphological traits of exotrophic tadpoles (such as oral papillae and keratodonts). This indicates that these tadpoles are either non-feeding (endotrophic) or only facultatively feeding tadpoles. We classify these tadpoles as nidicolous based on the observation that the larvae of G. sp. aff. blanci stayed after hatching in the jelly nest until metamorphosis. It remains unclarified whether all species have strictly nidicolous tadpoles, and the larvae of the four species found in the streams were just accidentally washed into these streams; alternatively, some of these tadpoles might be nidicolous at first but in some species need to live in free water at later stages.

Species distribution and assembly patterns of frog larvae in rainforest streams of Madagascar

Many tropical rainforests harbour species-rich assemblages of frogs and, consequently, of tadpoles. These larvae are often morphologically highly diverse, especially in their oral structures. Whether this might represent an important axis of ecological partitioning in frog assemblages remains an untested hypothesis. In general, it is poorly known how diverse tadpole assemblages are organised. Using information from Madagascar’s remarkably species-rich stream tadpole assemblages, we analysed the distribution and co-occurrence of 44 species. We also assessed the importance of phylogenetic history and eco-morphological adaptation for habitat selection at two functional and two spatial levels. We show that both rare and common species exist in most morphological clusters and phylogenetic groups of tadpoles. Habitat characteristics of the streams and surrounding forest influence species composition. Whereas there is a general trend in preferring wide and deep streams without a steep slope for most species, some of the morphological clusters separate along specific habitat variables. Stream choice is influenced both by phylogenetic history and morphological adaptation. Within streams, tadpoles partition microhabitat mainly according to their morphological cluster but without phylogenetic signal. Species dissimilarities of habitat selection on both spatial scales are not correlated. We found no evidence for competition in the tadpole assemblages studied.

Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages

Assemblages that are exposed to recurring temporal environmental changes can show changes in their ecological properties. These can be expressed by differences in diversity and assembly rules. Both can be identified using two measures of diversity: functional (FD) and phylogenetic diversity (PD). Frog communities are understudied in this regard, especially during the tadpole life stage. We utilised tadpole assemblages from Madagascan rainforest streams to test predictions of seasonal changes on diversity and assemblage composition and on diversity measures. From the warm-wet to the cool-dry season, species richness (SR) of tadpole assemblages decreased. Also FD and PD decreased, but FD less and PD more than expected by chance. During the dry season, tadpole assemblages were characterised by functional redundancy (among assemblages—with increasing SR), high FD (compared to a null model), and low PD (phylogenetic clustering; compared to a null model). Although mutually contradictory at first glance, these results indicate competition as tadpole community assembly driving force. This is true during the limiting cool-dry season but not during the more suitable warm-wet season. We thereby show that assembly rules can strongly depend on season, that comparing FD and PD can reveal such forces, that FD and PD are not interchangeable, and that conclusions on assembly rules based on FD alone are critical.

The Kingdom of the Frogs: Anuran Radiations in Madagascar

The island of Madagascar harbors one of the world’s most diverse amphibian faunas with an outstanding degree of 100% endemism at species level among the over 270 native species of frogs. The high research activity of recent years, together with the use of integrative taxonomic approaches, combining molecular genetics, comparative morphology, and bioacoustics, has led to the identification of many morphologically cryptic but evolutionarily highly divergent species of Malagasy frogs, leading to estimates of over 200 yet undescribed species. Ongoing phylogenetic and phylogeographic studies aim to understand the processes that might have generated this unique species diversity and microendemism. By now the larval stages of many Malagasy frogs are tremendously underexplored, although their relevance for the evolution, ecology, and conservation of animals with a biphasic lifestyle is apparent. Habitat destruction and fragmentation are the most important factors threatening amphibian diversity in Madagascar.